Literature DB >> 22596076

Photoreaction channels of the guanine-cytosine base pair explored by long-range corrected TDDFT calculations.

Shohei Yamazaki1, Tetsuya Taketsugu.   

Abstract

Photoinduced processes in the Watson-Crick guanine-cytosine base pair are comprehensively studied by means of long-range corrected (LC) TDDFT calculations of potential energy profiles using the LC-BLYP and CAM-B3LYP functionals. The ab initio CC2 method and the conventional TDDFT method with the B3LYP functional are also employed to assess the reliability of the LC-TDDFT method. The present approach allows us to compare the potential energy profiles at the same computational level for excited-state reactions of the base pair, including single and double proton transfer between the bases and nonradiative decay via ring puckering in each base. In particular, long-range correction to the TDDFT method is critical for a qualitatively correct description of the proton transfer reactions. The calculated energy profiles exhibit low barriers for out-of-plane deformation of the guanine moiety in the locally-excited state, which is expected to lead to a conical intersection with the ground state, as well as for single proton transfer from guanine to cytosine with the well-known electron-driven proton transfer mechanism. Thus the present results suggest that both processes can compete in hydrogen-bonded base pairs and play a significant role in the mechanism of photostability.

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Year:  2012        PMID: 22596076     DOI: 10.1039/c2cp23867e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  A theoretical investigation of one-dimensional lithium-bonded chain: enhanced first hyperpolarizability and little red-shift.

Authors:  Fang Ma; Dongsheng Bai; Hongliang Xu
Journal:  J Mol Model       Date:  2014-11-30       Impact factor: 1.810

2.  Excited States of One-Electron Oxidized Guanine-Cytosine Base Pair Radicals: A Time Dependent Density Functional Theory Study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem A       Date:  2019-04-02       Impact factor: 2.781

3.  Excited state proton-coupled electron transfer in 8-oxoG-C and 8-oxoG-A base pairs: a time dependent density functional theory (TD-DFT) study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  Photochem Photobiol Sci       Date:  2013-08       Impact factor: 3.982

4.  Role of Electron-Driven Proton-Transfer Processes in the Ultrafast Deactivation of Photoexcited Anionic 8-oxoGuanine-Adenine and 8-oxoGuanine-Cytosine Base Pairs.

Authors:  Xiuxiu Wu; Tolga N V Karsili; Wolfgang Domcke
Journal:  Molecules       Date:  2017-01-14       Impact factor: 4.411

5.  Electronic transitions and ESIPT kinetics of the thienyl-3-hydroxychromone nucleobase surrogate in DNA duplexes: a DFT/MD-TDDFT study.

Authors:  Alain Sougnabé; Daniel Lissouck; Fabien Fontaine-Vive; Mama Nsangou; Yves Mély; Alain Burger; Cyril A Kenfack
Journal:  RSC Adv       Date:  2020-02-20       Impact factor: 4.036

6.  The Ultrafast Quantum Dynamics of Photoexcited Adenine-Thymine Basepair Investigated with a Fragment-based Diabatization and a Linear Vibronic Coupling Model.

Authors:  Martha Yaghoubi Jouybari; James A Green; Roberto Improta; Fabrizio Santoro
Journal:  J Phys Chem A       Date:  2021-10-05       Impact factor: 2.944

7.  Dynamics of the excited-state hydrogen transfer in a (dG)·(dC) homopolymer: intrinsic photostability of DNA.

Authors:  Antonio Francés-Monerris; Hugo Gattuso; Daniel Roca-Sanjuán; Iñaki Tuñón; Marco Marazzi; Elise Dumont; Antonio Monari
Journal:  Chem Sci       Date:  2018-09-18       Impact factor: 9.825

  7 in total

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