Literature DB >> 22590438

[(3aS,5aR,8aR,8bS)-2,2,7,7-Tetra-methyl-tetra-hydro-3aH-bis-[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl (R)-N-(1-phenyl-eth-yl)sulfamate.

Meng Xie1, Si-Si Shen, Bao-Feng Chen, Yu Sha.   

Abstract

In the title compound, C(20)H(29)NO(8)S, the two five-membered rings adopt envelope conformations (with an O atom at the flap in each case), while the six-membered pyran ring displays a twist-boat conformation. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds into a supra-molecular chain running along the a axis.

Entities:  

Year:  2012        PMID: 22590438      PMCID: PMC3344676          DOI: 10.1107/S1600536812016704

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the drug topiramate [systematic name: 2,3:4,5-bis-O-(1-methyl­ethyl­idene)-beta-d-fructopyran­ose sulfamate] and its potential bioactivity, see: Maryanoff (2009 ▶); Maryanoff et al. (2008 ▶). For related structures, see: Maryanoff et al. (1998 ▶); Winum et al. (2006 ▶).

Experimental

Crystal data

C20H29NO8S M = 443.50 Orthorhombic, a = 9.5733 (9) Å b = 15.0134 (14) Å c = 15.9462 (15) Å V = 2291.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 293 K 0.28 × 0.20 × 0.15 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.950, T max = 0.973 13609 measured reflections 4041 independent reflections 3348 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.100 S = 1.04 4041 reflections 276 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 1736 Friedel pairs Flack parameter: −0.02 (8) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812016704/xu5509sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016704/xu5509Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H29NO8SDx = 1.285 Mg m3
Mr = 443.50Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 3967 reflections
a = 9.5733 (9) Åθ = 2.5–20.8°
b = 15.0134 (14) ŵ = 0.19 mm1
c = 15.9462 (15) ÅT = 293 K
V = 2291.9 (4) Å3Block, colourless
Z = 40.28 × 0.20 × 0.15 mm
F(000) = 944
Bruker APEX CCD area-detector diffractometer4041 independent reflections
Radiation source: fine-focus sealed tube3348 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.950, Tmax = 0.973k = −17→16
13609 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0565P)2 + 0.0232P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4041 reflectionsΔρmax = 0.14 e Å3
276 parametersΔρmin = −0.19 e Å3
0 restraintsAbsolute structure: Flack (1983), 1736 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.19640 (7)0.77181 (4)0.55630 (4)0.05958 (19)
O10.15464 (15)0.71781 (12)0.63697 (9)0.0589 (4)
O20.1225 (3)0.85374 (12)0.55749 (13)0.0841 (6)
O30.34363 (19)0.76955 (16)0.55879 (13)0.0908 (7)
O4−0.12573 (18)0.71591 (11)0.78266 (10)0.0623 (5)
O50.1236 (2)0.59605 (12)0.84887 (12)0.0785 (6)
O60.11065 (19)0.73889 (11)0.80456 (10)0.0623 (5)
O7−0.15017 (18)0.53273 (13)0.70728 (12)0.0706 (5)
O8−0.3187 (2)0.55560 (17)0.80406 (14)0.0970 (7)
N10.1465 (2)0.71749 (13)0.47609 (12)0.0551 (5)
H1A0.05380.73370.46850.066*
C10.1733 (3)0.55498 (16)0.50384 (15)0.0590 (6)
C20.0399 (3)0.5210 (2)0.5013 (2)0.0891 (10)
H2−0.02580.54530.46500.107*
C30.0038 (5)0.4506 (3)0.5529 (3)0.1323 (19)
H3−0.08640.42780.55100.159*
C40.0982 (9)0.4147 (3)0.6059 (3)0.155 (3)
H40.07300.36750.64050.186*
C50.2294 (8)0.4476 (3)0.6085 (3)0.140 (2)
H50.29440.42310.64520.168*
C60.2678 (4)0.5177 (2)0.5567 (2)0.0941 (11)
H60.35890.53920.55820.113*
C70.2137 (2)0.63303 (15)0.44935 (14)0.0525 (5)
H70.31500.64090.45410.063*
C80.1798 (3)0.6189 (2)0.35758 (16)0.0782 (8)
H8A0.08050.61360.35080.117*
H8B0.22420.56540.33820.117*
H8C0.21310.66870.32560.117*
C90.0129 (2)0.72335 (19)0.66670 (14)0.0575 (6)
H9A−0.04730.68590.63280.069*
H9B−0.02040.78420.66290.069*
C100.0103 (3)0.69241 (16)0.75731 (14)0.0512 (6)
C110.0462 (3)0.59463 (16)0.77320 (16)0.0594 (6)
H110.10450.57170.72750.071*
C12−0.0800 (3)0.53558 (18)0.78492 (18)0.0679 (7)
H12−0.05200.47570.80260.082*
C13−0.1909 (3)0.57379 (19)0.84437 (17)0.0749 (8)
H13−0.18730.54240.89820.090*
C14−0.1693 (3)0.67232 (19)0.85826 (17)0.0769 (9)
H14A−0.25580.69880.87780.092*
H14B−0.09900.68110.90130.092*
C150.2006 (4)0.67763 (19)0.84864 (18)0.0754 (8)
C160.3370 (3)0.6682 (2)0.8038 (3)0.1010 (12)
H16A0.39600.62760.83390.151*
H16B0.38180.72530.80030.151*
H16C0.32080.64570.74830.151*
C170.2157 (5)0.7101 (3)0.9384 (2)0.1217 (15)
H17A0.12480.71760.96280.183*
H17B0.26420.76610.93880.183*
H17C0.26770.66720.97030.183*
C18−0.2960 (3)0.5233 (2)0.72210 (19)0.0735 (8)
C19−0.3362 (4)0.4256 (3)0.7196 (3)0.1220 (14)
H19A−0.28240.39340.76030.183*
H19B−0.31780.40220.66470.183*
H19C−0.43380.41960.73210.183*
C20−0.3716 (4)0.5806 (3)0.6615 (2)0.1097 (12)
H20A−0.47030.57600.67120.164*
H20B−0.35080.56160.60540.164*
H20C−0.34260.64140.66860.164*
U11U22U33U12U13U23
S10.0639 (4)0.0605 (4)0.0542 (3)−0.0178 (3)0.0103 (3)−0.0063 (3)
O10.0513 (9)0.0788 (11)0.0467 (9)0.0067 (8)0.0047 (7)0.0040 (8)
O20.1259 (17)0.0482 (10)0.0781 (13)−0.0087 (10)0.0276 (13)−0.0058 (10)
O30.0632 (12)0.1228 (17)0.0865 (13)−0.0377 (11)0.0139 (10)−0.0305 (14)
O40.0721 (10)0.0594 (10)0.0555 (10)0.0228 (8)0.0178 (8)0.0063 (9)
O50.0932 (14)0.0661 (12)0.0762 (13)0.0151 (10)−0.0197 (11)0.0193 (10)
O60.0838 (11)0.0538 (10)0.0495 (9)0.0132 (9)−0.0116 (8)−0.0001 (8)
O70.0681 (12)0.0765 (12)0.0671 (12)−0.0053 (9)0.0197 (10)−0.0090 (10)
O80.0785 (14)0.1293 (19)0.0832 (14)0.0074 (13)0.0282 (12)−0.0074 (14)
N10.0599 (12)0.0553 (12)0.0501 (11)0.0039 (10)−0.0009 (9)0.0037 (9)
C10.0752 (18)0.0509 (13)0.0508 (14)0.0014 (13)0.0123 (12)−0.0048 (11)
C20.091 (2)0.0660 (19)0.111 (3)−0.0071 (16)0.040 (2)0.0001 (19)
C30.172 (4)0.067 (2)0.158 (4)−0.026 (3)0.110 (4)−0.011 (3)
C40.327 (9)0.051 (2)0.086 (3)0.015 (4)0.099 (5)0.006 (2)
C50.284 (8)0.072 (3)0.063 (2)0.047 (4)0.000 (4)0.005 (2)
C60.146 (3)0.0672 (19)0.0687 (19)0.0207 (19)−0.022 (2)−0.0035 (17)
C70.0501 (13)0.0562 (13)0.0511 (13)−0.0018 (10)0.0042 (12)−0.0031 (12)
C80.103 (2)0.0783 (18)0.0530 (15)−0.0034 (17)0.0046 (16)−0.0068 (14)
C90.0544 (14)0.0732 (17)0.0449 (12)0.0045 (13)0.0020 (10)0.0071 (13)
C100.0605 (14)0.0505 (13)0.0426 (12)0.0122 (11)0.0030 (11)−0.0020 (10)
C110.0684 (16)0.0535 (14)0.0562 (15)0.0158 (12)0.0046 (13)0.0027 (12)
C120.0800 (19)0.0528 (15)0.0709 (18)0.0119 (14)0.0089 (15)0.0088 (14)
C130.091 (2)0.0798 (19)0.0543 (15)0.0030 (17)0.0198 (16)0.0136 (14)
C140.095 (2)0.087 (2)0.0487 (15)0.0202 (17)0.0263 (15)0.0026 (14)
C150.095 (2)0.0631 (17)0.0684 (18)0.0118 (16)−0.0278 (17)0.0084 (14)
C160.075 (2)0.087 (2)0.141 (3)0.0195 (17)−0.036 (2)0.010 (2)
C170.176 (4)0.121 (3)0.068 (2)−0.001 (3)−0.055 (2)0.009 (2)
C180.0679 (18)0.0804 (18)0.0722 (18)−0.0053 (15)0.0199 (16)0.0013 (16)
C190.117 (3)0.091 (2)0.158 (4)−0.032 (2)0.040 (3)−0.005 (3)
C200.085 (2)0.138 (3)0.106 (3)−0.005 (2)−0.008 (2)0.027 (3)
S1—O31.411 (2)C8—H8A0.9600
S1—O21.419 (2)C8—H8B0.9600
S1—O11.5722 (17)C8—H8C0.9600
S1—N11.590 (2)C9—C101.518 (3)
O1—C91.440 (3)C9—H9A0.9700
O4—C101.409 (3)C9—H9B0.9700
O4—C141.434 (3)C10—C111.529 (3)
O5—C111.416 (3)C11—C121.510 (4)
O5—C151.430 (3)C11—H110.9800
O6—C101.406 (3)C12—C131.535 (4)
O6—C151.443 (3)C12—H120.9800
O7—C121.409 (3)C13—C141.510 (4)
O7—C181.423 (3)C13—H130.9800
O8—C131.408 (4)C14—H14A0.9700
O8—C181.411 (3)C14—H14B0.9700
N1—C71.485 (3)C15—C161.496 (5)
N1—H1A0.9275C15—C171.519 (4)
C1—C61.358 (4)C16—H16A0.9600
C1—C21.375 (4)C16—H16B0.9600
C1—C71.509 (3)C16—H16C0.9600
C2—C31.383 (5)C17—H17A0.9600
C2—H20.9300C17—H17B0.9600
C3—C41.349 (8)C17—H17C0.9600
C3—H30.9300C18—C201.483 (4)
C4—C51.350 (8)C18—C191.516 (5)
C4—H40.9300C19—H19A0.9600
C5—C61.387 (6)C19—H19B0.9600
C5—H50.9300C19—H19C0.9600
C6—H60.9300C20—H20A0.9600
C7—C81.514 (4)C20—H20B0.9600
C7—H70.9800C20—H20C0.9600
O3—S1—O2121.23 (14)C12—C11—C10113.8 (2)
O3—S1—O1102.63 (12)O5—C11—H11110.0
O2—S1—O1108.03 (11)C12—C11—H11110.0
O3—S1—N1108.09 (11)C10—C11—H11110.0
O2—S1—N1107.80 (13)O7—C12—C11106.9 (2)
O1—S1—N1108.49 (10)O7—C12—C13103.0 (2)
C9—O1—S1118.64 (14)C11—C12—C13114.3 (2)
C10—O4—C14113.32 (19)O7—C12—H12110.8
C11—O5—C15106.29 (19)C11—C12—H12110.8
C10—O6—C15110.64 (19)C13—C12—H12110.8
C12—O7—C18108.9 (2)O8—C13—C14112.1 (3)
C13—O8—C18110.8 (2)O8—C13—C12104.3 (2)
C7—N1—S1122.60 (16)C14—C13—C12111.2 (2)
C7—N1—H1A126.9O8—C13—H13109.7
S1—N1—H1A104.9C14—C13—H13109.7
C6—C1—C2118.9 (3)C12—C13—H13109.7
C6—C1—C7120.4 (3)O4—C14—C13111.3 (2)
C2—C1—C7120.6 (3)O4—C14—H14A109.4
C1—C2—C3119.9 (4)C13—C14—H14A109.4
C1—C2—H2120.1O4—C14—H14B109.4
C3—C2—H2120.1C13—C14—H14B109.4
C4—C3—C2120.7 (5)H14A—C14—H14B108.0
C4—C3—H3119.7O5—C15—O6103.9 (2)
C2—C3—H3119.7O5—C15—C16111.8 (3)
C5—C4—C3119.8 (5)O6—C15—C16110.4 (2)
C5—C4—H4120.1O5—C15—C17108.8 (3)
C3—C4—H4120.1O6—C15—C17108.1 (3)
C4—C5—C6120.3 (5)C16—C15—C17113.4 (3)
C4—C5—H5119.8C15—C16—H16A109.5
C6—C5—H5119.8C15—C16—H16B109.5
C1—C6—C5120.4 (4)H16A—C16—H16B109.5
C1—C6—H6119.8C15—C16—H16C109.5
C5—C6—H6119.8H16A—C16—H16C109.5
N1—C7—C1112.74 (18)H16B—C16—H16C109.5
N1—C7—C8107.7 (2)C15—C17—H17A109.5
C1—C7—C8113.1 (2)C15—C17—H17B109.5
N1—C7—H7107.7H17A—C17—H17B109.5
C1—C7—H7107.7C15—C17—H17C109.5
C8—C7—H7107.7H17A—C17—H17C109.5
C7—C8—H8A109.5H17B—C17—H17C109.5
C7—C8—H8B109.5O8—C18—O7105.7 (2)
H8A—C8—H8B109.5O8—C18—C20109.2 (3)
C7—C8—H8C109.5O7—C18—C20108.2 (2)
H8A—C8—H8C109.5O8—C18—C19108.6 (3)
H8B—C8—H8C109.5O7—C18—C19109.9 (3)
O1—C9—C10108.12 (18)C20—C18—C19114.8 (3)
O1—C9—H9A110.1C18—C19—H19A109.5
C10—C9—H9A110.1C18—C19—H19B109.5
O1—C9—H9B110.1H19A—C19—H19B109.5
C10—C9—H9B110.1C18—C19—H19C109.5
H9A—C9—H9B108.4H19A—C19—H19C109.5
O6—C10—O4110.70 (18)H19B—C19—H19C109.5
O6—C10—C9110.3 (2)C18—C20—H20A109.5
O4—C10—C9102.21 (18)C18—C20—H20B109.5
O6—C10—C11103.55 (19)H20A—C20—H20B109.5
O4—C10—C11113.6 (2)C18—C20—H20C109.5
C9—C10—C11116.6 (2)H20A—C20—H20C109.5
O5—C11—C12108.8 (2)H20B—C20—H20C109.5
O5—C11—C10104.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3i0.932.062.959 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O3i0.932.062.959 (3)163

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2009 Edward E Smissman Award. Pharmaceutical "gold" from neurostabilizing agents: topiramate and successor molecules.

Authors:  Bruce E Maryanoff
Journal:  J Med Chem       Date:  2009-06-11       Impact factor: 7.446

3.  Structure-activity studies on anticonvulsant sugar sulfamates related to topiramate. Enhanced potency with cyclic sulfate derivatives.

Authors:  B E Maryanoff; M J Costanzo; S O Nortey; M N Greco; R P Shank; J J Schupsky; M P Ortegon; J L Vaught
Journal:  J Med Chem       Date:  1998-04-09       Impact factor: 7.446

4.  Carbonic anhydrase inhibitors: clash with Ala65 as a means for designing inhibitors with low affinity for the ubiquitous isozyme II, exemplified by the crystal structure of the topiramate sulfamide analogue.

Authors:  Jean-Yves Winum; Claudia Temperini; Khaled El Cheikh; Alessio Innocenti; Daniela Vullo; Samuele Ciattini; Jean-Louis Montero; Andrea Scozzafava; Claudiu T Supuran
Journal:  J Med Chem       Date:  2006-11-30       Impact factor: 7.446

5.  Carbonic anhydrase-II inhibition. what are the true enzyme-inhibitory properties of the sulfamide cognate of topiramate?

Authors:  Bruce E Maryanoff; David F McComsey; Jung Lee; Virginia L Smith-Swintosky; Yuanping Wang; Lisa K Minor; Matthew J Todd
Journal:  J Med Chem       Date:  2008-03-26       Impact factor: 7.446

  5 in total
  1 in total

1.  Synthesis and crystal structure of topiramate azido-sulfate at 90 K and 298 K.

Authors:  Prabhakar Priyanka; Bidarur K Jayanna; Haruvegowda Kiran Kumar; Thayamma R Divakara; Hemmige S Yathirajan; Christopher Glidewell; Sean Parkin
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-09-08
  1 in total

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