Literature DB >> 22590384

(E)-N'-[3-(4-Chloro-benzo-yloxy)benzyl-idene]pyridine-4-carbohydrazide acetic acid monosolvate monohydrate.

Chun-Hua Diao1, Zhi Fan.   

Abstract

In the Schiff base mol-ecule of the title compound, C(20)H(14)ClN(3)O(3)·CH(3)COOH·H(2)O, the central benzene ring makes dihedral angles of 36.26 (7) and 27.59 (8)°, respectively, with the terminal chloro-phenyl and pyridine rings. In the crystal, the three components are linked by O-H⋯O, N-H⋯O, O-H⋯N and C-H⋯O hydrogen bonds into a double-tape structure along the a axis.

Entities:  

Year:  2012        PMID: 22590384      PMCID: PMC3344622          DOI: 10.1107/S1600536812017369

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the use of Schiff base derivatives in the development of protein and enzyme mimics, see: Santos et al. (2001 ▶). For closely related crystal structures, see: Diao et al. (2007 ▶); Peralta et al. (2007 ▶); de Souza et al. (2007 ▶); Wardell et al. (2005 ▶). For reference bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C20H14ClN3O3·C2H4O2·H2O M = 457.86 Triclinic, a = 6.6666 (15) Å b = 7.5437 (17) Å c = 24.781 (6) Å α = 81.526 (4)° β = 82.969 (4)° γ = 66.632 (4)° V = 1128.7 (5) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 294 K 0.18 × 0.16 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.928, T max = 0.979 5755 measured reflections 3936 independent reflections 2501 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.119 S = 1.03 3936 reflections 298 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global. DOI: 10.1107/S1600536812017369/is5118sup1.cif Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14ClN3O3·C2H4O2·H2OZ = 2
Mr = 457.86F(000) = 476
Triclinic, P1Dx = 1.347 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.6666 (15) ÅCell parameters from 1984 reflections
b = 7.5437 (17) Åθ = 2.5–25.2°
c = 24.781 (6) ŵ = 0.21 mm1
α = 81.526 (4)°T = 294 K
β = 82.969 (4)°Block, colorless
γ = 66.632 (4)°0.18 × 0.16 × 0.10 mm
V = 1128.7 (5) Å3
Bruker SMART APEX CCD area-detector diffractometer3936 independent reflections
Radiation source: fine-focus sealed tube2501 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→7
Tmin = 0.928, Tmax = 0.979k = −8→8
5755 measured reflectionsl = −27→29
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0473P)2 + 0.2041P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3936 reflectionsΔρmax = 0.15 e Å3
298 parametersΔρmin = −0.17 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0070 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.33537 (13)0.76087 (12)0.41389 (3)0.0905 (3)
O10.5002 (3)0.8179 (3)0.59922 (8)0.0951 (7)
O20.7889 (3)0.6503 (3)0.64925 (7)0.0686 (5)
O30.3270 (2)0.7186 (2)0.98573 (7)0.0608 (5)
N10.5560 (3)0.6798 (3)0.88899 (8)0.0524 (5)
N20.6335 (3)0.7116 (3)0.93397 (7)0.0534 (5)
H20.75810.72210.93190.064*
N30.7533 (4)0.8006 (3)1.12485 (8)0.0626 (6)
C10.7913 (5)0.7979 (5)0.50434 (12)0.0820 (9)
H10.64430.83410.49870.098*
C20.9364 (5)0.8039 (4)0.46046 (11)0.0809 (9)
H2A0.88820.84450.42540.097*
C31.1507 (4)0.7501 (4)0.46886 (10)0.0628 (7)
C41.2231 (5)0.6916 (5)0.52037 (11)0.0822 (9)
H41.37020.65590.52580.099*
C51.0767 (4)0.6859 (4)0.56408 (11)0.0742 (8)
H51.12580.64540.59910.089*
C60.8596 (4)0.7392 (3)0.55674 (10)0.0563 (6)
C70.6938 (4)0.7422 (4)0.60230 (11)0.0643 (7)
C80.6574 (4)0.6336 (4)0.69716 (10)0.0573 (6)
C90.4946 (4)0.5648 (4)0.69816 (11)0.0669 (7)
H90.46090.53480.66620.080*
C100.3821 (4)0.5412 (4)0.74740 (11)0.0659 (7)
H100.27050.49580.74860.079*
C110.4328 (4)0.5838 (3)0.79477 (10)0.0580 (6)
H110.35400.56910.82760.070*
C120.6014 (4)0.6488 (3)0.79379 (9)0.0511 (6)
C130.7122 (4)0.6747 (4)0.74412 (10)0.0573 (6)
H130.82390.72010.74260.069*
C140.6656 (4)0.6871 (4)0.84357 (10)0.0581 (6)
H140.78870.71730.84210.070*
C150.5077 (4)0.7258 (3)0.98161 (9)0.0474 (6)
C160.6030 (3)0.7529 (3)1.03005 (9)0.0450 (5)
C170.8176 (4)0.7278 (4)1.03257 (10)0.0626 (7)
H170.91650.69511.00220.075*
C180.8846 (4)0.7516 (4)1.08031 (11)0.0713 (8)
H181.03090.73211.08140.086*
C190.5476 (4)0.8251 (4)1.12229 (10)0.0636 (7)
H190.45210.85901.15320.076*
C200.4667 (4)0.8032 (4)1.07641 (10)0.0594 (7)
H200.31990.82251.07670.071*
O41.0439 (3)0.9861 (3)0.19590 (9)0.0936 (7)
O50.8367 (4)0.8213 (3)0.22488 (7)0.0878 (6)
H5A0.82970.82340.19200.132*
C210.9595 (5)0.9109 (4)0.23256 (11)0.0660 (7)
C220.9809 (6)0.9134 (5)0.29172 (12)0.1010 (11)
H22A1.11280.93140.29580.151*
H22B0.98670.79240.31160.151*
H22C0.85701.01810.30580.151*
O60.0290 (3)0.7824 (3)0.90528 (8)0.0777 (6)
H6A0.134 (4)0.765 (4)0.9249 (10)0.117*
H6B0.018 (5)0.864 (4)0.8768 (8)0.117*
U11U22U33U12U13U23
Cl10.0937 (6)0.1030 (6)0.0582 (5)−0.0225 (5)0.0095 (4)−0.0146 (4)
O10.0563 (12)0.1292 (18)0.0847 (15)−0.0278 (12)−0.0173 (10)0.0215 (12)
O20.0556 (10)0.0987 (13)0.0469 (10)−0.0248 (10)−0.0071 (8)−0.0053 (9)
O30.0446 (9)0.0839 (12)0.0618 (11)−0.0325 (9)−0.0085 (8)−0.0052 (9)
N10.0542 (12)0.0602 (12)0.0502 (12)−0.0289 (10)−0.0117 (10)−0.0023 (9)
N20.0512 (11)0.0751 (13)0.0467 (12)−0.0376 (10)−0.0089 (9)−0.0021 (9)
N30.0690 (14)0.0746 (14)0.0544 (13)−0.0382 (12)−0.0109 (11)−0.0031 (10)
C10.0660 (18)0.117 (3)0.0624 (19)−0.0361 (17)−0.0226 (15)0.0082 (16)
C20.083 (2)0.104 (2)0.0537 (18)−0.0337 (18)−0.0217 (16)0.0064 (15)
C30.0722 (17)0.0602 (15)0.0519 (15)−0.0195 (14)−0.0023 (13)−0.0129 (12)
C40.0588 (17)0.123 (3)0.0561 (18)−0.0247 (17)−0.0066 (14)−0.0115 (16)
C50.0655 (17)0.107 (2)0.0449 (15)−0.0256 (16)−0.0122 (13)−0.0066 (14)
C60.0581 (15)0.0588 (15)0.0527 (15)−0.0211 (12)−0.0122 (12)−0.0056 (11)
C70.0613 (17)0.0715 (17)0.0618 (17)−0.0257 (14)−0.0178 (14)−0.0013 (13)
C80.0514 (14)0.0650 (16)0.0524 (15)−0.0184 (13)−0.0058 (12)−0.0071 (12)
C90.0721 (17)0.0750 (18)0.0613 (17)−0.0312 (15)−0.0091 (14)−0.0189 (13)
C100.0687 (17)0.0780 (18)0.0680 (18)−0.0430 (15)−0.0068 (14)−0.0153 (14)
C110.0581 (15)0.0636 (16)0.0588 (16)−0.0295 (13)−0.0036 (12)−0.0091 (12)
C120.0498 (13)0.0557 (14)0.0495 (14)−0.0215 (11)−0.0086 (11)−0.0039 (11)
C130.0500 (14)0.0720 (17)0.0562 (16)−0.0297 (13)−0.0100 (12)−0.0034 (12)
C140.0566 (15)0.0740 (17)0.0550 (16)−0.0373 (13)−0.0093 (12)−0.0025 (12)
C150.0464 (13)0.0474 (13)0.0507 (14)−0.0217 (11)−0.0097 (11)0.0034 (10)
C160.0433 (12)0.0474 (13)0.0475 (13)−0.0231 (10)−0.0060 (10)0.0033 (10)
C170.0501 (14)0.0955 (19)0.0517 (15)−0.0379 (14)−0.0007 (11)−0.0106 (13)
C180.0582 (16)0.108 (2)0.0625 (18)−0.0458 (16)−0.0087 (14)−0.0108 (16)
C190.0685 (17)0.0755 (18)0.0487 (15)−0.0307 (15)0.0001 (12)−0.0076 (12)
C200.0481 (14)0.0770 (17)0.0574 (16)−0.0305 (13)−0.0008 (12)−0.0045 (13)
O40.0878 (14)0.1262 (18)0.0788 (14)−0.0620 (14)−0.0170 (11)0.0218 (12)
O50.1197 (17)0.1169 (16)0.0548 (12)−0.0778 (15)−0.0107 (12)0.0026 (12)
C210.0703 (18)0.0653 (17)0.0599 (17)−0.0235 (15)−0.0166 (14)0.0033 (13)
C220.146 (3)0.096 (2)0.068 (2)−0.049 (2)−0.040 (2)0.0006 (17)
O60.0587 (11)0.1268 (17)0.0607 (12)−0.0549 (12)−0.0152 (9)0.0147 (11)
Cl1—C31.736 (3)C10—C111.375 (3)
O1—C71.194 (3)C10—H100.9300
O2—C71.353 (3)C11—C121.389 (3)
O2—C81.408 (3)C11—H110.9300
O3—C151.218 (2)C12—C131.385 (3)
N1—C141.271 (3)C12—C141.456 (3)
N1—N21.373 (2)C13—H130.9300
N2—C151.353 (3)C14—H140.9300
N2—H20.8600C15—C161.499 (3)
N3—C191.317 (3)C16—C201.374 (3)
N3—C181.322 (3)C16—C171.375 (3)
C1—C21.372 (4)C17—C181.374 (3)
C1—C61.380 (3)C17—H170.9300
C1—H10.9300C18—H180.9300
C2—C31.356 (4)C19—C201.373 (3)
C2—H2A0.9300C19—H190.9300
C3—C41.368 (3)C20—H200.9300
C4—C51.374 (4)O4—C211.200 (3)
C4—H40.9300O5—C211.295 (3)
C5—C61.368 (3)O5—H5A0.8200
C5—H50.9300C21—C221.494 (4)
C6—C71.476 (4)C22—H22A0.9600
C8—C91.372 (3)C22—H22B0.9600
C8—C131.373 (3)C22—H22C0.9600
C9—C101.379 (3)O6—H6A0.854 (10)
C9—H90.9300O6—H6B0.852 (10)
C7—O2—C8119.8 (2)C13—C12—C11118.7 (2)
C14—N1—N2116.74 (19)C13—C12—C14119.7 (2)
C15—N2—N1117.92 (19)C11—C12—C14121.6 (2)
C15—N2—H2121.0C8—C13—C12120.2 (2)
N1—N2—H2121.0C8—C13—H13119.9
C19—N3—C18116.7 (2)C12—C13—H13119.9
C2—C1—C6121.2 (3)N1—C14—C12121.0 (2)
C2—C1—H1119.4N1—C14—H14119.5
C6—C1—H1119.4C12—C14—H14119.5
C3—C2—C1119.2 (3)O3—C15—N2123.0 (2)
C3—C2—H2A120.4O3—C15—C16121.0 (2)
C1—C2—H2A120.4N2—C15—C16116.0 (2)
C2—C3—C4120.9 (3)C20—C16—C17116.8 (2)
C2—C3—Cl1119.7 (2)C20—C16—C15117.7 (2)
C4—C3—Cl1119.4 (2)C17—C16—C15125.5 (2)
C3—C4—C5119.5 (3)C18—C17—C16119.4 (2)
C3—C4—H4120.2C18—C17—H17120.3
C5—C4—H4120.2C16—C17—H17120.3
C6—C5—C4120.8 (2)N3—C18—C17123.8 (2)
C6—C5—H5119.6N3—C18—H18118.1
C4—C5—H5119.6C17—C18—H18118.1
C5—C6—C1118.4 (3)N3—C19—C20123.4 (2)
C5—C6—C7123.2 (2)N3—C19—H19118.3
C1—C6—C7118.4 (2)C20—C19—H19118.3
O1—C7—O2123.4 (3)C19—C20—C16119.9 (2)
O1—C7—C6125.3 (2)C19—C20—H20120.0
O2—C7—C6111.3 (2)C16—C20—H20120.0
C9—C8—C13121.3 (2)C21—O5—H5A109.5
C9—C8—O2122.2 (2)O4—C21—O5123.3 (3)
C13—C8—O2116.3 (2)O4—C21—C22123.9 (3)
C8—C9—C10118.7 (2)O5—C21—C22112.8 (3)
C8—C9—H9120.6C21—C22—H22A109.5
C10—C9—H9120.6C21—C22—H22B109.5
C11—C10—C9120.8 (2)H22A—C22—H22B109.5
C11—C10—H10119.6C21—C22—H22C109.5
C9—C10—H10119.6H22A—C22—H22C109.5
C10—C11—C12120.3 (2)H22B—C22—H22C109.5
C10—C11—H11119.9H6A—O6—H6B115.3 (17)
C12—C11—H11119.9
C14—N1—N2—C15172.9 (2)C10—C11—C12—C131.8 (3)
C6—C1—C2—C30.4 (5)C10—C11—C12—C14−177.3 (2)
C1—C2—C3—C4−0.5 (5)C9—C8—C13—C12−0.6 (4)
C1—C2—C3—Cl1−178.9 (2)O2—C8—C13—C12−175.4 (2)
C2—C3—C4—C50.5 (5)C11—C12—C13—C8−1.0 (3)
Cl1—C3—C4—C5178.9 (2)C14—C12—C13—C8178.0 (2)
C3—C4—C5—C6−0.4 (5)N2—N1—C14—C12177.86 (19)
C4—C5—C6—C10.3 (4)C13—C12—C14—N1174.2 (2)
C4—C5—C6—C7−177.9 (3)C11—C12—C14—N1−6.7 (4)
C2—C1—C6—C5−0.3 (5)N1—N2—C15—O3−2.7 (3)
C2—C1—C6—C7178.1 (3)N1—N2—C15—C16177.73 (18)
C8—O2—C7—O12.7 (4)O3—C15—C16—C20−11.2 (3)
C8—O2—C7—C6−178.4 (2)N2—C15—C16—C20168.4 (2)
C5—C6—C7—O1166.5 (3)O3—C15—C16—C17167.4 (2)
C1—C6—C7—O1−11.8 (4)N2—C15—C16—C17−13.0 (3)
C5—C6—C7—O2−12.4 (4)C20—C16—C17—C180.7 (4)
C1—C6—C7—O2169.4 (2)C15—C16—C17—C18−178.0 (2)
C7—O2—C8—C950.5 (3)C19—N3—C18—C170.7 (4)
C7—O2—C8—C13−134.6 (2)C16—C17—C18—N3−1.0 (4)
C13—C8—C9—C101.4 (4)C18—N3—C19—C20−0.3 (4)
O2—C8—C9—C10176.0 (2)N3—C19—C20—C160.1 (4)
C8—C9—C10—C11−0.6 (4)C17—C16—C20—C19−0.3 (3)
C9—C10—C11—C12−1.0 (4)C15—C16—C20—C19178.5 (2)
D—H···AD—HH···AD···AD—H···A
O6—H6A···O30.86 (3)2.00 (3)2.843 (2)166 (2)
O6—H6B···O4i0.86 (2)1.98 (2)2.812 (3)165 (3)
O5—H5A···N3ii0.821.852.646 (3)164
N2—H2···O6iii0.862.042.879 (2)164
C14—H14···O6iii0.932.593.367 (4)141
C17—H17···O6iii0.932.503.331 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6A⋯O30.86 (3)2.00 (3)2.843 (2)166 (2)
O6—H6B⋯O4i0.86 (2)1.98 (2)2.812 (3)165 (3)
O5—H5A⋯N3ii0.821.852.646 (3)164
N2—H2⋯O6iii0.862.042.879 (2)164
C14—H14⋯O6iii0.932.593.367 (4)141
C17—H17⋯O6iii0.932.503.331 (3)149

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

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Authors:  Marcus V N de Souza; Solange M S V Wardell; James L Wardell; John N Low; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2007-02-10       Impact factor: 1.172

2.  2,3-Dimethoxybenzaldehyde isonicotinoylhydrazone chloroform monosolvate, and the mono- and dihydrates of 3,4,5-trimethoxybenzaldehyde isonicotinoylhydrazone: hydrogen-bonded supramolecular structures in one, two and three dimensions.

Authors:  Monica A Peralta; Marcus N V de Souza; Solange M S V Wardell; James L Wardell; John N Low; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2006-12-23       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Four nitrobenzaldehyde isonicotinoylhydrazones at 120 K: four different supramolecular structures in two and three dimensions.

Authors:  Solange M S V Wardell; Marcus V N de Souza; James L Wardell; John N Low; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2005-11-11       Impact factor: 1.172

5.  (E)-N'-[5-chloro-3-methoxy-2-(4-methylphenylsulfonyloxy)benzylidene]isonicotinohydrazide acetic acid solvate: hydrogen-bonded network of alternating R4(4)(42), R5(5)(33) and R6(6)(40) rings.

Authors:  Chun-Hua Diao; Zhi Fan; Xin Chen
Journal:  Acta Crystallogr C       Date:  2007-11-14       Impact factor: 1.172

  5 in total

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