| Literature DB >> 22590379 |
Hoong-Kun Fun, Suchada Chantrapromma, Hatem A Abdel-Aziz.
Abstract
In the title compound, C(14)H(12)BrClN(4)OS, the thienyl ring is disordered over two orientations with a site-occupancy ratio of 0.853 (2):0.147 (2). The mol-ecule is roughly planar, with the dihedral angles between the thienyl and benzene rings being 6.24 (16) and 9.7 (11)° for the major and minor components, respectively. The central fragment is almost planar [r.m.s. deviation = 0.0275 (2) Å for the ten non-H atoms]. The mean plane through this middle unit makes a dihedral angle of 2.71 (7)° with the benzene ring, whereas these values are 4.46 (15) and 7.7 (11)° for the major and minor components of the thienyl ring, respectively. In the crystal, mol-ecules are linked into dimers by pairs of N-H⋯O hydrogen bonds, forming R(2) (2)(8) ring motifs. These dimers are arranged into sheets parallel to the ac plane.Entities:
Year: 2012 PMID: 22590379 PMCID: PMC3344617 DOI: 10.1107/S1600536812017114
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12BrClN4OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4458 reflections |
| θ = 1.4–30.0° | |
| µ = 3.00 mm−1 | |
| β = 103.075 (2)° | Needle, yellow |
| 0.38 × 0.10 × 0.06 mm | |
| Bruker APEX Duo CCD area detector diffractometer | 4458 independent reflections |
| Radiation source: sealed tube | 3378 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 1.4° |
| Absorption correction: multi-scan ( | |
| 14314 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4458 reflections | (Δ/σ)max = 0.001 |
| 223 parameters | Δρmax = 0.54 e Å−3 |
| 6 restraints | Δρmin = −0.36 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Cl1 | 0.46435 (3) | 0.69142 (13) | 0.184855 (16) | 0.01888 (11) | |
| Br1 | 1.077635 (15) | 0.50439 (6) | 0.376036 (7) | 0.02669 (7) | |
| O1 | 0.38556 (10) | 0.1793 (4) | −0.02052 (4) | 0.0194 (3) | |
| N1 | 0.66736 (13) | 0.5947 (5) | 0.24295 (6) | 0.0197 (4) | |
| N2 | 0.65558 (12) | 0.4813 (4) | 0.19957 (5) | 0.0174 (3) | |
| N3 | 0.47407 (12) | 0.3945 (4) | 0.09546 (5) | 0.0158 (3) | |
| N4 | 0.46842 (12) | 0.2636 (5) | 0.05229 (5) | 0.0162 (3) | |
| C1 | 0.84509 (14) | 0.4225 (5) | 0.25890 (7) | 0.0176 (4) | |
| H1A | 0.8369 | 0.3350 | 0.2293 | 0.021* | |
| C2 | 0.93831 (15) | 0.4030 (5) | 0.28961 (7) | 0.0180 (4) | |
| H2A | 0.9929 | 0.3003 | 0.2808 | 0.022* | |
| C3 | 0.95018 (14) | 0.5373 (5) | 0.33370 (7) | 0.0171 (4) | |
| C4 | 0.86974 (14) | 0.6913 (5) | 0.34736 (7) | 0.0182 (4) | |
| H4A | 0.8786 | 0.7839 | 0.3768 | 0.022* | |
| C5 | 0.77589 (14) | 0.7069 (5) | 0.31702 (7) | 0.0174 (4) | |
| H5A | 0.7212 | 0.8057 | 0.3263 | 0.021* | |
| C6 | 0.76335 (14) | 0.5748 (5) | 0.27276 (7) | 0.0158 (4) | |
| C7 | 0.57143 (14) | 0.5059 (5) | 0.17035 (6) | 0.0165 (4) | |
| C8 | 0.56220 (14) | 0.3761 (5) | 0.12343 (6) | 0.0160 (4) | |
| C9 | 0.65679 (14) | 0.2370 (6) | 0.11173 (7) | 0.0204 (4) | |
| H9A | 0.6666 | 0.3445 | 0.0841 | 0.031* | |
| H9B | 0.6502 | −0.0067 | 0.1071 | 0.031* | |
| H9C | 0.7139 | 0.2844 | 0.1365 | 0.031* | |
| C10 | 0.38400 (13) | 0.2968 (5) | 0.01792 (6) | 0.0151 (4) | |
| C11 | 0.29185 (14) | 0.4686 (5) | 0.02516 (6) | 0.0149 (4) | |
| S1 | 0.26973 (5) | 0.6374 (2) | 0.07517 (3) | 0.01674 (17) | 0.854 (2) |
| C12 | 0.2069 (3) | 0.5033 (13) | −0.01037 (15) | 0.0204 (8) | 0.854 (2) |
| H12A | 0.2047 | 0.4293 | −0.0402 | 0.024* | 0.854 (2) |
| C13 | 0.1241 (3) | 0.6605 (15) | 0.00274 (13) | 0.0175 (7) | 0.854 (2) |
| H13B | 0.0616 | 0.7008 | −0.0171 | 0.021* | 0.854 (2) |
| C14 | 0.1476 (2) | 0.7459 (12) | 0.04819 (11) | 0.0174 (7) | 0.854 (2) |
| H14B | 0.1024 | 0.8517 | 0.0631 | 0.021* | 0.854 (2) |
| S1X | 0.2004 (5) | 0.498 (2) | −0.02227 (19) | 0.0144 (13)* | 0.146 (2) |
| C12X | 0.2653 (17) | 0.592 (8) | 0.0633 (8) | 0.039 (8)* | 0.146 (2) |
| H12B | 0.3082 | 0.5916 | 0.0924 | 0.047* | 0.146 (2) |
| C13X | 0.1671 (17) | 0.721 (8) | 0.0541 (8) | 0.0144 (13)* | 0.15 |
| H13A | 0.1352 | 0.8097 | 0.0760 | 0.017* | 0.146 (2) |
| C14X | 0.125 (2) | 0.698 (13) | 0.0090 (9) | 0.039 (8)* | 0.15 |
| H14A | 0.0607 | 0.7818 | −0.0042 | 0.047* | 0.146 (2) |
| H1N4 | 0.5211 (19) | 0.138 (7) | 0.0459 (8) | 0.035 (7)* | |
| H1N1 | 0.6170 (15) | 0.722 (6) | 0.2508 (7) | 0.013 (5)* |
| Cl1 | 0.0152 (2) | 0.0249 (3) | 0.0170 (2) | 0.00090 (19) | 0.00470 (17) | −0.0032 (2) |
| Br1 | 0.01893 (10) | 0.03023 (13) | 0.02601 (12) | 0.00166 (9) | −0.00517 (8) | −0.00167 (10) |
| O1 | 0.0184 (6) | 0.0270 (8) | 0.0133 (7) | 0.0001 (6) | 0.0047 (5) | −0.0034 (6) |
| N1 | 0.0163 (8) | 0.0294 (10) | 0.0135 (8) | 0.0020 (7) | 0.0039 (6) | −0.0054 (7) |
| N2 | 0.0177 (8) | 0.0221 (9) | 0.0122 (7) | −0.0014 (7) | 0.0033 (6) | −0.0019 (7) |
| N3 | 0.0172 (8) | 0.0185 (8) | 0.0119 (7) | −0.0016 (6) | 0.0039 (6) | −0.0006 (7) |
| N4 | 0.0139 (7) | 0.0230 (9) | 0.0116 (7) | 0.0012 (7) | 0.0028 (6) | −0.0022 (7) |
| C1 | 0.0182 (9) | 0.0219 (10) | 0.0137 (9) | −0.0002 (7) | 0.0060 (7) | −0.0019 (8) |
| C2 | 0.0159 (9) | 0.0188 (10) | 0.0200 (10) | −0.0006 (7) | 0.0056 (8) | −0.0007 (8) |
| C3 | 0.0145 (8) | 0.0174 (10) | 0.0176 (9) | −0.0019 (7) | −0.0003 (7) | 0.0021 (8) |
| C4 | 0.0220 (9) | 0.0182 (10) | 0.0138 (9) | −0.0004 (8) | 0.0030 (7) | −0.0003 (8) |
| C5 | 0.0185 (9) | 0.0195 (10) | 0.0147 (9) | 0.0016 (8) | 0.0051 (7) | 0.0003 (8) |
| C6 | 0.0150 (8) | 0.0181 (10) | 0.0142 (9) | −0.0011 (7) | 0.0029 (7) | 0.0011 (8) |
| C7 | 0.0150 (8) | 0.0212 (10) | 0.0146 (9) | −0.0018 (8) | 0.0057 (7) | −0.0002 (8) |
| C8 | 0.0162 (9) | 0.0182 (9) | 0.0137 (9) | −0.0009 (7) | 0.0039 (7) | 0.0002 (8) |
| C9 | 0.0153 (8) | 0.0298 (12) | 0.0156 (9) | 0.0026 (8) | 0.0026 (7) | −0.0037 (9) |
| C10 | 0.0146 (8) | 0.0174 (9) | 0.0140 (9) | −0.0031 (7) | 0.0043 (7) | 0.0019 (8) |
| C11 | 0.0150 (8) | 0.0169 (9) | 0.0138 (9) | −0.0025 (7) | 0.0051 (7) | 0.0005 (8) |
| S1 | 0.0170 (3) | 0.0194 (3) | 0.0146 (4) | 0.0011 (2) | 0.0052 (2) | −0.0011 (3) |
| C12 | 0.0187 (14) | 0.0260 (16) | 0.0185 (19) | −0.0034 (11) | 0.0082 (15) | −0.0041 (19) |
| C13 | 0.0126 (12) | 0.0226 (19) | 0.0167 (14) | −0.0015 (10) | 0.0020 (9) | 0.0031 (14) |
| C14 | 0.0143 (16) | 0.0217 (15) | 0.0170 (15) | 0.0056 (13) | 0.0048 (12) | 0.0032 (12) |
| Cl1—C7 | 1.7601 (19) | C8—C9 | 1.503 (3) |
| Br1—C3 | 1.8990 (19) | C9—H9A | 0.9600 |
| O1—C10 | 1.239 (2) | C9—H9B | 0.9600 |
| N1—N2 | 1.342 (2) | C9—H9C | 0.9600 |
| N1—C6 | 1.402 (2) | C10—C11 | 1.475 (3) |
| N1—H1N1 | 0.92 (2) | C11—C12X | 1.36 (2) |
| N2—C7 | 1.272 (2) | C11—C12 | 1.383 (5) |
| N3—C8 | 1.295 (2) | C11—S1X | 1.660 (6) |
| N3—N4 | 1.370 (2) | C11—S1 | 1.717 (2) |
| N4—C10 | 1.358 (2) | S1—C14 | 1.721 (2) |
| N4—H1N4 | 0.92 (3) | C12—C13 | 1.409 (5) |
| C1—C2 | 1.384 (3) | C12—H12A | 0.9300 |
| C1—C6 | 1.399 (3) | C13—C14 | 1.361 (4) |
| C1—H1A | 0.9300 | C13—H13B | 0.9300 |
| C2—C3 | 1.390 (3) | C14—H14B | 0.9300 |
| C2—H2A | 0.9300 | S1X—C14X | 1.717 (19) |
| C3—C4 | 1.384 (3) | C12X—C13X | 1.389 (18) |
| C4—C5 | 1.385 (3) | C12X—H12B | 0.9300 |
| C4—H4A | 0.9300 | C13X—C14X | 1.339 (17) |
| C5—C6 | 1.391 (3) | C13X—H13A | 0.9300 |
| C5—H5A | 0.9300 | C14X—H14A | 0.9300 |
| C7—C8 | 1.466 (3) | ||
| N2—N1—C6 | 118.94 (16) | C8—C9—H9C | 109.5 |
| N2—N1—H1N1 | 119.5 (13) | H9A—C9—H9C | 109.5 |
| C6—N1—H1N1 | 120.4 (13) | H9B—C9—H9C | 109.5 |
| C7—N2—N1 | 121.87 (17) | O1—C10—N4 | 118.37 (17) |
| C8—N3—N4 | 115.57 (16) | O1—C10—C11 | 119.68 (17) |
| C10—N4—N3 | 122.12 (16) | N4—C10—C11 | 121.95 (17) |
| C10—N4—H1N4 | 117.1 (16) | C12X—C11—C12 | 105.9 (9) |
| N3—N4—H1N4 | 120.7 (16) | C12X—C11—C10 | 132.7 (9) |
| C2—C1—C6 | 119.53 (18) | C12—C11—C10 | 121.2 (2) |
| C2—C1—H1A | 120.2 | C12X—C11—S1X | 113.6 (9) |
| C6—C1—H1A | 120.2 | C10—C11—S1X | 113.6 (3) |
| C1—C2—C3 | 119.87 (18) | C12—C11—S1 | 110.5 (2) |
| C1—C2—H2A | 120.1 | C10—C11—S1 | 128.37 (14) |
| C3—C2—H2A | 120.1 | S1X—C11—S1 | 118.0 (3) |
| C4—C3—C2 | 120.75 (18) | C11—S1—C14 | 91.51 (15) |
| C4—C3—Br1 | 119.47 (15) | C11—C12—C13 | 114.0 (3) |
| C2—C3—Br1 | 119.78 (14) | C11—C12—H12A | 123.0 |
| C3—C4—C5 | 119.64 (18) | C13—C12—H12A | 123.0 |
| C3—C4—H4A | 120.2 | C14—C13—C12 | 111.2 (3) |
| C5—C4—H4A | 120.2 | C14—C13—H13B | 124.4 |
| C4—C5—C6 | 120.05 (17) | C12—C13—H13B | 124.4 |
| C4—C5—H5A | 120.0 | C13—C14—S1 | 112.9 (3) |
| C6—C5—H5A | 120.0 | C13—C14—H14B | 123.6 |
| C5—C6—C1 | 120.15 (18) | S1—C14—H14B | 123.6 |
| C5—C6—N1 | 118.55 (17) | C11—S1X—C14X | 89.5 (9) |
| C1—C6—N1 | 121.30 (17) | C11—C12X—C13X | 112.7 (16) |
| N2—C7—C8 | 119.82 (17) | C11—C12X—H12B | 123.6 |
| N2—C7—Cl1 | 121.57 (15) | C13X—C12X—H12B | 123.6 |
| C8—C7—Cl1 | 118.61 (14) | C14X—C13X—C12X | 110 (2) |
| N3—C8—C7 | 117.55 (17) | C14X—C13X—H13A | 124.9 |
| N3—C8—C9 | 125.54 (17) | C12X—C13X—H13A | 124.9 |
| C7—C8—C9 | 116.89 (16) | C13X—C14X—S1X | 113.8 (19) |
| C8—C9—H9A | 109.5 | C13X—C14X—H14A | 123.1 |
| C8—C9—H9B | 109.5 | S1X—C14X—H14A | 123.1 |
| H9A—C9—H9B | 109.5 | ||
| C6—N1—N2—C7 | −176.96 (19) | N4—C10—C11—C12 | 179.3 (3) |
| C8—N3—N4—C10 | −173.07 (18) | O1—C10—C11—S1X | −2.8 (4) |
| C6—C1—C2—C3 | −0.6 (3) | N4—C10—C11—S1X | 176.9 (3) |
| C1—C2—C3—C4 | −0.1 (3) | O1—C10—C11—S1 | 177.55 (15) |
| C1—C2—C3—Br1 | 179.12 (15) | N4—C10—C11—S1 | −2.7 (3) |
| C2—C3—C4—C5 | 1.1 (3) | C12X—C11—S1—C14 | −32 (13) |
| Br1—C3—C4—C5 | −178.13 (15) | C12—C11—S1—C14 | 0.7 (3) |
| C3—C4—C5—C6 | −1.4 (3) | C10—C11—S1—C14 | −177.4 (2) |
| C4—C5—C6—C1 | 0.7 (3) | S1X—C11—S1—C14 | 3.0 (4) |
| C4—C5—C6—N1 | 179.99 (19) | C12X—C11—C12—C13 | 2.2 (14) |
| C2—C1—C6—C5 | 0.3 (3) | C10—C11—C12—C13 | 177.5 (4) |
| C2—C1—C6—N1 | −178.97 (19) | S1X—C11—C12—C13 | −166 (4) |
| N2—N1—C6—C5 | 177.19 (18) | S1—C11—C12—C13 | −0.8 (5) |
| N2—N1—C6—C1 | −3.5 (3) | C11—C12—C13—C14 | 0.4 (7) |
| N1—N2—C7—C8 | −179.62 (18) | C12—C13—C14—S1 | 0.1 (6) |
| N1—N2—C7—Cl1 | 0.1 (3) | C11—S1—C14—C13 | −0.5 (4) |
| N4—N3—C8—C7 | −178.66 (17) | C12X—C11—S1X—C14X | 2 (2) |
| N4—N3—C8—C9 | 2.3 (3) | C12—C11—S1X—C14X | 15 (4) |
| N2—C7—C8—N3 | 177.33 (19) | C10—C11—S1X—C14X | 179.2 (19) |
| Cl1—C7—C8—N3 | −2.4 (3) | S1—C11—S1X—C14X | −1.1 (19) |
| N2—C7—C8—C9 | −3.5 (3) | C12—C11—C12X—C13X | −2 (3) |
| Cl1—C7—C8—C9 | 176.79 (15) | C10—C11—C12X—C13X | −176.9 (17) |
| N3—N4—C10—O1 | 178.17 (17) | S1X—C11—C12X—C13X | −1 (3) |
| N3—N4—C10—C11 | −1.6 (3) | S1—C11—C12X—C13X | 146 (15) |
| O1—C10—C11—C12X | 173.4 (18) | C11—C12X—C13X—C14X | −2 (4) |
| N4—C10—C11—C12X | −6.8 (18) | C12X—C13X—C14X—S1X | 4 (5) |
| O1—C10—C11—C12 | −0.4 (4) | C11—S1X—C14X—C13X | −3 (4) |
| H··· | ||||
| N4—H1 | 0.92 (3) | 2.03 (3) | 2.938 (2) | 168 (2) |
| N1—H1 | 0.92 (2) | 2.51 (2) | 2.9246 (19) | 107.7 (15) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H1 | 0.92 (3) | 2.03 (3) | 2.938 (2) | 168 (2) |
| N1—H1 | 0.92 (2) | 2.51 (2) | 2.9246 (19) | 107.7 (15) |
Symmetry code: (i) .