Literature DB >> 22590379

(1Z,2E)-N'-{1-[2-(4-Bromo-phen-yl)hydrazin-1-yl-idene]-1-chloro-propan-2-yl-idene}thio-phene-2-carbohydrazide.

Hoong-Kun Fun, Suchada Chantrapromma, Hatem A Abdel-Aziz.   

Abstract

In the title compound, C(14)H(12)BrClN(4)OS, the thienyl ring is disordered over two orientations with a site-occupancy ratio of 0.853 (2):0.147 (2). The mol-ecule is roughly planar, with the dihedral angles between the thienyl and benzene rings being 6.24 (16) and 9.7 (11)° for the major and minor components, respectively. The central fragment is almost planar [r.m.s. deviation = 0.0275 (2) Å for the ten non-H atoms]. The mean plane through this middle unit makes a dihedral angle of 2.71 (7)° with the benzene ring, whereas these values are 4.46 (15) and 7.7 (11)° for the major and minor components of the thienyl ring, respectively. In the crystal, mol-ecules are linked into dimers by pairs of N-H⋯O hydrogen bonds, forming R(2) (2)(8) ring motifs. These dimers are arranged into sheets parallel to the ac plane.

Entities:  

Year:  2012        PMID: 22590379      PMCID: PMC3344617          DOI: 10.1107/S1600536812017114

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to and the biological activity of (1Z,2E)-N-(ar­yl)propane­hydrazonoyl chlorides, see: Abdel-Aziz & Mekawey (2009 ▶); Abdel-Aziz et al. (2010 ▶). For a related structure, see: Abdel-Aziz et al. (2012 ▶). For the stability of the temperature controller, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C14H12BrClN4OS M = 399.79 Monoclinic, a = 13.5502 (14) Å b = 3.8932 (4) Å c = 29.816 (3) Å β = 103.075 (2)° V = 1532.1 (3) Å3 Z = 4 Mo Kα radiation μ = 3.00 mm−1 T = 100 K 0.38 × 0.10 × 0.06 mm

Data collection

Bruker APEX Duo CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.399, T max = 0.848 14314 measured reflections 4458 independent reflections 3378 reflections with I > 2σ(I)’ R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.075 S = 1.05 4458 reflections 223 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017114/bq2351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017114/bq2351Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017114/bq2351Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12BrClN4OSF(000) = 800
Mr = 399.79Dx = 1.733 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4458 reflections
a = 13.5502 (14) Åθ = 1.4–30.0°
b = 3.8932 (4) ŵ = 3.00 mm1
c = 29.816 (3) ÅT = 100 K
β = 103.075 (2)°Needle, yellow
V = 1532.1 (3) Å30.38 × 0.10 × 0.06 mm
Z = 4
Bruker APEX Duo CCD area detector diffractometer4458 independent reflections
Radiation source: sealed tube3378 reflections with I > 2σ(I)'
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 30.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −19→19
Tmin = 0.399, Tmax = 0.848k = −2→5
14314 measured reflectionsl = −41→41
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0313P)2 + 0.3052P] where P = (Fo2 + 2Fc2)/3
4458 reflections(Δ/σ)max = 0.001
223 parametersΔρmax = 0.54 e Å3
6 restraintsΔρmin = −0.36 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.46435 (3)0.69142 (13)0.184855 (16)0.01888 (11)
Br11.077635 (15)0.50439 (6)0.376036 (7)0.02669 (7)
O10.38556 (10)0.1793 (4)−0.02052 (4)0.0194 (3)
N10.66736 (13)0.5947 (5)0.24295 (6)0.0197 (4)
N20.65558 (12)0.4813 (4)0.19957 (5)0.0174 (3)
N30.47407 (12)0.3945 (4)0.09546 (5)0.0158 (3)
N40.46842 (12)0.2636 (5)0.05229 (5)0.0162 (3)
C10.84509 (14)0.4225 (5)0.25890 (7)0.0176 (4)
H1A0.83690.33500.22930.021*
C20.93831 (15)0.4030 (5)0.28961 (7)0.0180 (4)
H2A0.99290.30030.28080.022*
C30.95018 (14)0.5373 (5)0.33370 (7)0.0171 (4)
C40.86974 (14)0.6913 (5)0.34736 (7)0.0182 (4)
H4A0.87860.78390.37680.022*
C50.77589 (14)0.7069 (5)0.31702 (7)0.0174 (4)
H5A0.72120.80570.32630.021*
C60.76335 (14)0.5748 (5)0.27276 (7)0.0158 (4)
C70.57143 (14)0.5059 (5)0.17035 (6)0.0165 (4)
C80.56220 (14)0.3761 (5)0.12343 (6)0.0160 (4)
C90.65679 (14)0.2370 (6)0.11173 (7)0.0204 (4)
H9A0.66660.34450.08410.031*
H9B0.6502−0.00670.10710.031*
H9C0.71390.28440.13650.031*
C100.38400 (13)0.2968 (5)0.01792 (6)0.0151 (4)
C110.29185 (14)0.4686 (5)0.02516 (6)0.0149 (4)
S10.26973 (5)0.6374 (2)0.07517 (3)0.01674 (17)0.854 (2)
C120.2069 (3)0.5033 (13)−0.01037 (15)0.0204 (8)0.854 (2)
H12A0.20470.4293−0.04020.024*0.854 (2)
C130.1241 (3)0.6605 (15)0.00274 (13)0.0175 (7)0.854 (2)
H13B0.06160.7008−0.01710.021*0.854 (2)
C140.1476 (2)0.7459 (12)0.04819 (11)0.0174 (7)0.854 (2)
H14B0.10240.85170.06310.021*0.854 (2)
S1X0.2004 (5)0.498 (2)−0.02227 (19)0.0144 (13)*0.146 (2)
C12X0.2653 (17)0.592 (8)0.0633 (8)0.039 (8)*0.146 (2)
H12B0.30820.59160.09240.047*0.146 (2)
C13X0.1671 (17)0.721 (8)0.0541 (8)0.0144 (13)*0.15
H13A0.13520.80970.07600.017*0.146 (2)
C14X0.125 (2)0.698 (13)0.0090 (9)0.039 (8)*0.15
H14A0.06070.7818−0.00420.047*0.146 (2)
H1N40.5211 (19)0.138 (7)0.0459 (8)0.035 (7)*
H1N10.6170 (15)0.722 (6)0.2508 (7)0.013 (5)*
U11U22U33U12U13U23
Cl10.0152 (2)0.0249 (3)0.0170 (2)0.00090 (19)0.00470 (17)−0.0032 (2)
Br10.01893 (10)0.03023 (13)0.02601 (12)0.00166 (9)−0.00517 (8)−0.00167 (10)
O10.0184 (6)0.0270 (8)0.0133 (7)0.0001 (6)0.0047 (5)−0.0034 (6)
N10.0163 (8)0.0294 (10)0.0135 (8)0.0020 (7)0.0039 (6)−0.0054 (7)
N20.0177 (8)0.0221 (9)0.0122 (7)−0.0014 (7)0.0033 (6)−0.0019 (7)
N30.0172 (8)0.0185 (8)0.0119 (7)−0.0016 (6)0.0039 (6)−0.0006 (7)
N40.0139 (7)0.0230 (9)0.0116 (7)0.0012 (7)0.0028 (6)−0.0022 (7)
C10.0182 (9)0.0219 (10)0.0137 (9)−0.0002 (7)0.0060 (7)−0.0019 (8)
C20.0159 (9)0.0188 (10)0.0200 (10)−0.0006 (7)0.0056 (8)−0.0007 (8)
C30.0145 (8)0.0174 (10)0.0176 (9)−0.0019 (7)−0.0003 (7)0.0021 (8)
C40.0220 (9)0.0182 (10)0.0138 (9)−0.0004 (8)0.0030 (7)−0.0003 (8)
C50.0185 (9)0.0195 (10)0.0147 (9)0.0016 (8)0.0051 (7)0.0003 (8)
C60.0150 (8)0.0181 (10)0.0142 (9)−0.0011 (7)0.0029 (7)0.0011 (8)
C70.0150 (8)0.0212 (10)0.0146 (9)−0.0018 (8)0.0057 (7)−0.0002 (8)
C80.0162 (9)0.0182 (9)0.0137 (9)−0.0009 (7)0.0039 (7)0.0002 (8)
C90.0153 (8)0.0298 (12)0.0156 (9)0.0026 (8)0.0026 (7)−0.0037 (9)
C100.0146 (8)0.0174 (9)0.0140 (9)−0.0031 (7)0.0043 (7)0.0019 (8)
C110.0150 (8)0.0169 (9)0.0138 (9)−0.0025 (7)0.0051 (7)0.0005 (8)
S10.0170 (3)0.0194 (3)0.0146 (4)0.0011 (2)0.0052 (2)−0.0011 (3)
C120.0187 (14)0.0260 (16)0.0185 (19)−0.0034 (11)0.0082 (15)−0.0041 (19)
C130.0126 (12)0.0226 (19)0.0167 (14)−0.0015 (10)0.0020 (9)0.0031 (14)
C140.0143 (16)0.0217 (15)0.0170 (15)0.0056 (13)0.0048 (12)0.0032 (12)
Cl1—C71.7601 (19)C8—C91.503 (3)
Br1—C31.8990 (19)C9—H9A0.9600
O1—C101.239 (2)C9—H9B0.9600
N1—N21.342 (2)C9—H9C0.9600
N1—C61.402 (2)C10—C111.475 (3)
N1—H1N10.92 (2)C11—C12X1.36 (2)
N2—C71.272 (2)C11—C121.383 (5)
N3—C81.295 (2)C11—S1X1.660 (6)
N3—N41.370 (2)C11—S11.717 (2)
N4—C101.358 (2)S1—C141.721 (2)
N4—H1N40.92 (3)C12—C131.409 (5)
C1—C21.384 (3)C12—H12A0.9300
C1—C61.399 (3)C13—C141.361 (4)
C1—H1A0.9300C13—H13B0.9300
C2—C31.390 (3)C14—H14B0.9300
C2—H2A0.9300S1X—C14X1.717 (19)
C3—C41.384 (3)C12X—C13X1.389 (18)
C4—C51.385 (3)C12X—H12B0.9300
C4—H4A0.9300C13X—C14X1.339 (17)
C5—C61.391 (3)C13X—H13A0.9300
C5—H5A0.9300C14X—H14A0.9300
C7—C81.466 (3)
N2—N1—C6118.94 (16)C8—C9—H9C109.5
N2—N1—H1N1119.5 (13)H9A—C9—H9C109.5
C6—N1—H1N1120.4 (13)H9B—C9—H9C109.5
C7—N2—N1121.87 (17)O1—C10—N4118.37 (17)
C8—N3—N4115.57 (16)O1—C10—C11119.68 (17)
C10—N4—N3122.12 (16)N4—C10—C11121.95 (17)
C10—N4—H1N4117.1 (16)C12X—C11—C12105.9 (9)
N3—N4—H1N4120.7 (16)C12X—C11—C10132.7 (9)
C2—C1—C6119.53 (18)C12—C11—C10121.2 (2)
C2—C1—H1A120.2C12X—C11—S1X113.6 (9)
C6—C1—H1A120.2C10—C11—S1X113.6 (3)
C1—C2—C3119.87 (18)C12—C11—S1110.5 (2)
C1—C2—H2A120.1C10—C11—S1128.37 (14)
C3—C2—H2A120.1S1X—C11—S1118.0 (3)
C4—C3—C2120.75 (18)C11—S1—C1491.51 (15)
C4—C3—Br1119.47 (15)C11—C12—C13114.0 (3)
C2—C3—Br1119.78 (14)C11—C12—H12A123.0
C3—C4—C5119.64 (18)C13—C12—H12A123.0
C3—C4—H4A120.2C14—C13—C12111.2 (3)
C5—C4—H4A120.2C14—C13—H13B124.4
C4—C5—C6120.05 (17)C12—C13—H13B124.4
C4—C5—H5A120.0C13—C14—S1112.9 (3)
C6—C5—H5A120.0C13—C14—H14B123.6
C5—C6—C1120.15 (18)S1—C14—H14B123.6
C5—C6—N1118.55 (17)C11—S1X—C14X89.5 (9)
C1—C6—N1121.30 (17)C11—C12X—C13X112.7 (16)
N2—C7—C8119.82 (17)C11—C12X—H12B123.6
N2—C7—Cl1121.57 (15)C13X—C12X—H12B123.6
C8—C7—Cl1118.61 (14)C14X—C13X—C12X110 (2)
N3—C8—C7117.55 (17)C14X—C13X—H13A124.9
N3—C8—C9125.54 (17)C12X—C13X—H13A124.9
C7—C8—C9116.89 (16)C13X—C14X—S1X113.8 (19)
C8—C9—H9A109.5C13X—C14X—H14A123.1
C8—C9—H9B109.5S1X—C14X—H14A123.1
H9A—C9—H9B109.5
C6—N1—N2—C7−176.96 (19)N4—C10—C11—C12179.3 (3)
C8—N3—N4—C10−173.07 (18)O1—C10—C11—S1X−2.8 (4)
C6—C1—C2—C3−0.6 (3)N4—C10—C11—S1X176.9 (3)
C1—C2—C3—C4−0.1 (3)O1—C10—C11—S1177.55 (15)
C1—C2—C3—Br1179.12 (15)N4—C10—C11—S1−2.7 (3)
C2—C3—C4—C51.1 (3)C12X—C11—S1—C14−32 (13)
Br1—C3—C4—C5−178.13 (15)C12—C11—S1—C140.7 (3)
C3—C4—C5—C6−1.4 (3)C10—C11—S1—C14−177.4 (2)
C4—C5—C6—C10.7 (3)S1X—C11—S1—C143.0 (4)
C4—C5—C6—N1179.99 (19)C12X—C11—C12—C132.2 (14)
C2—C1—C6—C50.3 (3)C10—C11—C12—C13177.5 (4)
C2—C1—C6—N1−178.97 (19)S1X—C11—C12—C13−166 (4)
N2—N1—C6—C5177.19 (18)S1—C11—C12—C13−0.8 (5)
N2—N1—C6—C1−3.5 (3)C11—C12—C13—C140.4 (7)
N1—N2—C7—C8−179.62 (18)C12—C13—C14—S10.1 (6)
N1—N2—C7—Cl10.1 (3)C11—S1—C14—C13−0.5 (4)
N4—N3—C8—C7−178.66 (17)C12X—C11—S1X—C14X2 (2)
N4—N3—C8—C92.3 (3)C12—C11—S1X—C14X15 (4)
N2—C7—C8—N3177.33 (19)C10—C11—S1X—C14X179.2 (19)
Cl1—C7—C8—N3−2.4 (3)S1—C11—S1X—C14X−1.1 (19)
N2—C7—C8—C9−3.5 (3)C12—C11—C12X—C13X−2 (3)
Cl1—C7—C8—C9176.79 (15)C10—C11—C12X—C13X−176.9 (17)
N3—N4—C10—O1178.17 (17)S1X—C11—C12X—C13X−1 (3)
N3—N4—C10—C11−1.6 (3)S1—C11—C12X—C13X146 (15)
O1—C10—C11—C12X173.4 (18)C11—C12X—C13X—C14X−2 (4)
N4—C10—C11—C12X−6.8 (18)C12X—C13X—C14X—S1X4 (5)
O1—C10—C11—C12−0.4 (4)C11—S1X—C14X—C13X−3 (4)
D—H···AD—HH···AD···AD—H···A
N4—H1N4···O1i0.92 (3)2.03 (3)2.938 (2)168 (2)
N1—H1N1···Cl10.92 (2)2.51 (2)2.9246 (19)107.7 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H1N4⋯O1i0.92 (3)2.03 (3)2.938 (2)168 (2)
N1—H1N1⋯Cl10.92 (2)2.51 (2)2.9246 (19)107.7 (15)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Stereoselective synthesis and antiviral activity of (1E,2Z,3E)-1-(piperidin-1-yl)-1-(arylhydrazono)-2-[(benzoyl/benzothiazol-2-oyl)hydrazono]-4-(aryl(1))but-3-enes.

Authors:  Hatem A Abdel-Aziza; Bakr F Abdel-Wahab; Farid A Badria
Journal:  Arch Pharm (Weinheim)       Date:  2010-03       Impact factor: 3.751

3.  Convenient synthesis and antimicrobial evaluation of some novel 2-substituted-3-methylbenzofuran derivatives.

Authors:  Hatem A Abdel-Aziz; Amal A I Mekawey; Kamal M Dawood
Journal:  Eur J Med Chem       Date:  2009-02-27       Impact factor: 6.514

4.  (1Z,2E)-N'-{2-Chloro-1-methyl-2-[2-(4-methyl-phen-yl)hydrazin-1-yl-idene]ethyl-idene}-4-meth-oxy-benzohydrazide.

Authors:  Hatem A Abdel-Aziz; Hazem A Ghabbour; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  2-Anilino-4-(1,3-benzothia-zol-2-yl)-5-(4-chloro-benzo-yl)thio-phene-3-carbonitrile.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; Hatem A Abdel-Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
  1 in total

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