Literature DB >> 22590375

3-Benzyl-2H-chromen-2-one.

Guo-Qiang Li, Yao-Lan Li, Tao Jiang, Ren-Wang Jiang, Guo-Cai Wang.   

Abstract

The title compound, C(16)H(12)O(2), is a coumarin which was isolated from stones of the Chinese traditional medicine Clausena lansium. The pyrone ring is almost planar, with a mean deviation of 0.0135 (4) Å. The benzene ring (A) of the benzopyrone unit forms dihedral angles of 1.82 (5) and 72.86 (2)° with the pyrone ring and the substituent benzene ring, respectively. The crystal structure is stabilized by weak π-π stacking inter-actions, with a minimum centroid-centroid distance between benzene rings of 3.6761 (7) Å.

Entities:  

Year:  2012        PMID: 22590375      PMCID: PMC3344613          DOI: 10.1107/S1600536812014298

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the isolation of the title compound, see: Wisanu et al. (2010 ▶, 2012 ▶). For the biological activity of Clausena lansium, see: Adebajo et al. (2009 ▶).

Experimental

Crystal data

C16H12O2 M = 236.26 Monoclinic, a = 11.7704 (4) Å b = 8.2809 (4) Å c = 12.4652 (6) Å β = 108.151 (2)° V = 1154.52 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.86 × 0.23 × 0.21 mm

Data collection

Bruker SMART CCD 1000 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.928, T max = 0.982 8002 measured reflections 2475 independent reflections 2050 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.093 S = 1.08 2475 reflections 163 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SAINT (Bruker, 1998 ▶); cell refinement: SMART (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812014298/zs2199sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812014298/zs2199Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812014298/zs2199Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12O2F(000) = 496
Mr = 236.26Dx = 1.359 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.710747 Å
a = 11.7704 (4) ÅCell parameters from 8002 reflections
b = 8.2809 (4) Åθ = 3–27.5°
c = 12.4652 (6) ŵ = 0.09 mm1
β = 108.151 (2)°T = 150 K
V = 1154.52 (9) Å3Prism, colourless
Z = 40.86 × 0.23 × 0.21 mm
Bruker SMART CCD 1000 diffractometer2475 independent reflections
Radiation source: fine-focus sealed tube2050 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω scansθmax = 27.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→13
Tmin = 0.928, Tmax = 0.982k = −10→10
8002 measured reflectionsl = −12→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0426P)2 + 0.2137P] where P = (Fo2 + 2Fc2)/3
2475 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.38027 (9)0.35804 (12)0.36947 (9)0.0229 (2)
C20.35856 (9)0.38688 (11)0.47770 (9)0.0206 (2)
C30.43498 (9)0.32578 (12)0.57355 (9)0.0213 (2)
H30.42190.34770.64360.026*
C40.53617 (9)0.22788 (12)0.57215 (9)0.0206 (2)
C50.61806 (10)0.16006 (13)0.66886 (10)0.0260 (3)
H50.60990.18030.74110.031*
C60.71066 (10)0.06388 (13)0.65934 (10)0.0287 (3)
H60.76600.01910.72520.034*
C70.72314 (10)0.03238 (12)0.55376 (11)0.0271 (3)
H70.7868−0.03420.54820.033*
C80.64344 (9)0.09730 (12)0.45677 (10)0.0251 (2)
H80.65110.07520.38460.030*
C90.55206 (9)0.19552 (12)0.46798 (9)0.0206 (2)
C100.24760 (9)0.48264 (12)0.47378 (10)0.0244 (2)
H10A0.23660.57060.41770.029*
H10B0.25860.53250.54850.029*
C110.13605 (9)0.37716 (12)0.44253 (9)0.0216 (2)
C120.09172 (10)0.31780 (13)0.52614 (10)0.0285 (3)
H120.13050.34530.60290.034*
C13−0.00877 (11)0.21854 (14)0.49858 (11)0.0323 (3)
H13−0.03830.17940.55650.039*
C14−0.06579 (10)0.17677 (13)0.38743 (11)0.0296 (3)
H14−0.13440.10920.36870.036*
C15−0.02205 (10)0.23422 (14)0.30374 (11)0.0307 (3)
H15−0.06040.20510.22730.037*
C160.07789 (9)0.33453 (13)0.33096 (10)0.0272 (3)
H160.10660.37420.27270.033*
O10.47592 (6)0.26132 (9)0.36983 (6)0.02389 (19)
O20.32169 (7)0.41253 (10)0.27881 (7)0.0331 (2)
U11U22U33U12U13U23
C10.0211 (5)0.0238 (5)0.0243 (6)−0.0041 (4)0.0078 (4)0.0014 (4)
C20.0205 (5)0.0186 (5)0.0242 (6)−0.0052 (4)0.0092 (4)−0.0015 (4)
C30.0233 (5)0.0221 (5)0.0209 (6)−0.0049 (4)0.0102 (4)−0.0034 (4)
C40.0204 (5)0.0199 (5)0.0221 (6)−0.0050 (4)0.0076 (4)−0.0012 (4)
C50.0273 (6)0.0286 (5)0.0217 (6)−0.0024 (4)0.0072 (4)−0.0003 (4)
C60.0246 (6)0.0268 (5)0.0318 (7)−0.0005 (4)0.0045 (5)0.0045 (5)
C70.0231 (5)0.0199 (5)0.0401 (7)−0.0018 (4)0.0126 (5)−0.0016 (4)
C80.0262 (6)0.0237 (5)0.0294 (6)−0.0053 (4)0.0143 (5)−0.0050 (4)
C90.0201 (5)0.0199 (5)0.0221 (6)−0.0053 (4)0.0071 (4)−0.0006 (4)
C100.0238 (6)0.0203 (5)0.0292 (6)−0.0012 (4)0.0086 (4)−0.0014 (4)
C110.0198 (5)0.0179 (5)0.0276 (6)0.0031 (4)0.0079 (4)0.0001 (4)
C120.0312 (6)0.0310 (6)0.0254 (6)−0.0042 (5)0.0121 (5)−0.0067 (5)
C130.0358 (6)0.0343 (6)0.0338 (7)−0.0070 (5)0.0207 (5)−0.0034 (5)
C140.0224 (6)0.0297 (6)0.0372 (7)−0.0056 (4)0.0101 (5)−0.0021 (5)
C150.0264 (6)0.0368 (6)0.0247 (6)−0.0043 (5)0.0020 (5)0.0011 (5)
C160.0253 (6)0.0307 (6)0.0250 (6)−0.0020 (4)0.0067 (4)0.0066 (4)
O10.0247 (4)0.0297 (4)0.0191 (4)−0.0007 (3)0.0094 (3)0.0003 (3)
O20.0314 (4)0.0432 (5)0.0240 (5)0.0019 (4)0.0077 (3)0.0089 (4)
C1—C21.4687 (15)C8—C91.3898 (15)
C1—O11.3805 (13)C9—O11.3834 (13)
C1—O21.2128 (13)C10—H10A0.9900
C2—C31.3502 (15)C10—H10B0.9900
C2—C101.5157 (14)C10—C111.5231 (14)
C3—H30.9500C11—C121.3925 (15)
C3—C41.4453 (14)C11—C161.3908 (16)
C4—C51.4050 (15)C12—H120.9500
C4—C91.3944 (16)C12—C131.3927 (16)
C5—H50.9500C13—H130.9500
C5—C61.3845 (16)C13—C141.3821 (18)
C6—H60.9500C14—H140.9500
C6—C71.3937 (17)C14—C151.3836 (17)
C7—H70.9500C15—H150.9500
C7—C81.3871 (16)C15—C161.3930 (15)
C8—H80.9500C16—H160.9500
O1—C1—C2117.80 (9)O1—C9—C8116.75 (10)
O2—C1—C2125.76 (10)C2—C10—H10A109.2
O2—C1—O1116.43 (10)C2—C10—H10B109.2
C1—C2—C10116.75 (9)C2—C10—C11111.95 (8)
C3—C2—C1119.56 (9)H10A—C10—H10B107.9
C3—C2—C10123.67 (10)C11—C10—H10A109.2
C2—C3—H3119.2C11—C10—H10B109.2
C2—C3—C4121.59 (10)C12—C11—C10120.34 (10)
C4—C3—H3119.2C16—C11—C10121.18 (10)
C5—C4—C3124.16 (10)C16—C11—C12118.46 (10)
C9—C4—C3117.98 (10)C11—C12—H12119.6
C9—C4—C5117.84 (10)C11—C12—C13120.74 (11)
C4—C5—H5119.9C13—C12—H12119.6
C6—C5—C4120.29 (11)C12—C13—H13119.8
C6—C5—H5119.9C14—C13—C12120.33 (11)
C5—C6—H6119.8C14—C13—H13119.8
C5—C6—C7120.40 (11)C13—C14—H14120.3
C7—C6—H6119.8C13—C14—C15119.42 (11)
C6—C7—H7119.7C15—C14—H14120.3
C8—C7—C6120.58 (10)C14—C15—H15119.8
C8—C7—H7119.7C14—C15—C16120.38 (11)
C7—C8—H8120.9C16—C15—H15119.8
C7—C8—C9118.28 (11)C11—C16—C15120.67 (11)
C9—C8—H8120.9C11—C16—H16119.7
C8—C9—C4122.59 (10)C15—C16—H16119.7
O1—C9—C4120.66 (9)C1—O1—C9122.30 (9)
C1—C2—C3—C4−1.97 (14)C7—C8—C9—O1178.51 (9)
C1—C2—C10—C1182.11 (11)C8—C9—O1—C1178.61 (9)
C2—C1—O1—C9−1.63 (13)C9—C4—C5—C6−0.30 (15)
C2—C3—C4—C5−179.48 (9)C10—C2—C3—C4176.63 (9)
C2—C3—C4—C9−1.02 (14)C10—C11—C12—C13−178.67 (10)
C2—C10—C11—C1298.80 (12)C10—C11—C16—C15178.15 (10)
C2—C10—C11—C16−79.60 (12)C11—C12—C13—C140.32 (18)
C3—C2—C10—C11−96.53 (12)C12—C11—C16—C15−0.27 (16)
C3—C4—C5—C6178.17 (9)C12—C13—C14—C150.10 (18)
C3—C4—C9—C8−177.27 (9)C13—C14—C15—C16−0.60 (18)
C3—C4—C9—O12.74 (14)C14—C15—C16—C110.70 (17)
C4—C5—C6—C7−0.46 (16)C16—C11—C12—C13−0.23 (16)
C4—C9—O1—C1−1.39 (14)O1—C1—C2—C33.29 (14)
C5—C4—C9—C81.30 (15)O1—C1—C2—C10−175.41 (8)
C5—C4—C9—O1−178.70 (8)O2—C1—C2—C3−176.32 (10)
C5—C6—C7—C80.27 (16)O2—C1—C2—C104.98 (15)
C6—C7—C8—C90.68 (15)O2—C1—O1—C9178.02 (9)
C7—C8—C9—C4−1.49 (15)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Pharmacological properties of the extract and some isolated compounds of Clausena lansium stem bark: anti-trichomonal, antidiabetic, anti-inflammatory, hepatoprotective and antioxidant effects.

Authors:  A C Adebajo; E O Iwalewa; E M Obuotor; G F Ibikunle; N O Omisore; C O Adewunmi; O O Obaparusi; M Klaes; G E Adetogun; T J Schmidt; E J Verspohl
Journal:  J Ethnopharmacol       Date:  2008-11-27       Impact factor: 4.360

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.