Literature DB >> 22590355

6-Meth-oxy-1-(4-meth-oxy-phen-yl)-1,2,3,4-tetra-hydro-9H-β-carbolin-2-ium acetate.

Teik Beng Goh, Mohd Nizam Mordi, Sharif Mahsufi Mansor, Mohd Mustaqim Rosli, Hoong-Kun Fun.   

Abstract

In the title compound, C(19)H(21)N(2)O(2) (+)·C(2)H(3)O(2) (-), the 1H-indole ring system is essentially planar [maximum deviation = 0.0257 (14) Å] and forms a dihedral angle of 87.92 (7) Å with the benzene ring attached to the tetra-hydro-pyridinium fragment. The tetra-hydro-pyridinium ring adopts a half-chair conformation. In the crystal, cations and anions are linked by inter-ionic N-H⋯O, C-H⋯O and C-H⋯N hydrogen bonds into chains along the a axis.

Entities:  

Year:  2012        PMID: 22590355      PMCID: PMC3344593          DOI: 10.1107/S1600536812016753

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of metal complexes with 6-meth­oxy-1-methyl-4,9-dihydro-3H-pyrido[3,4-b]indole, see: Al-Allaf et al. (1990 ▶); Herraiz et al. (2003 ▶). For a related tetra­chlorido­zincate structure, see: Goh et al. (2012 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H21N2O2C2H3O2 M = 368.42 Monoclinic, a = 9.1046 (4) Å b = 19.8837 (8) Å c = 12.0856 (5) Å β = 123.281 (3)° V = 1829.06 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.28 × 0.24 × 0.16 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.974, T max = 0.985 21273 measured reflections 6211 independent reflections 4350 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.134 S = 1.03 6211 reflections 247 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812016753/rz2738sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016753/rz2738Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812016753/rz2738Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H21N2O2+·C2H3O2F(000) = 784
Mr = 368.42Dx = 1.338 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5044 reflections
a = 9.1046 (4) Åθ = 2.5–31.4°
b = 19.8837 (8) ŵ = 0.09 mm1
c = 12.0856 (5) ÅT = 100 K
β = 123.281 (3)°Block, colourless
V = 1829.06 (15) Å30.28 × 0.24 × 0.16 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer6211 independent reflections
Radiation source: fine-focus sealed tube4350 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
φ and ω scansθmax = 31.7°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→13
Tmin = 0.974, Tmax = 0.985k = −25→29
21273 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0554P)2 + 0.5954P] where P = (Fo2 + 2Fc2)/3
6211 reflections(Δ/σ)max = 0.001
247 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.19801 (14)0.80635 (6)−0.51962 (10)0.0206 (2)
O20.79721 (14)0.79841 (5)0.61132 (10)0.0178 (2)
N10.53529 (15)0.91336 (6)−0.01734 (11)0.0134 (2)
H20.64450.92910.04000.016*
N20.21849 (15)0.94170 (6)0.07834 (11)0.0140 (2)
H10.17120.97490.01360.017*
H30.21140.95610.15180.017*
C10.47738 (18)0.88736 (7)−0.14119 (13)0.0130 (3)
C20.56016 (19)0.88480 (7)−0.20957 (14)0.0148 (3)
H2A0.67670.9010−0.17040.018*
C30.46785 (19)0.85799 (7)−0.33659 (14)0.0153 (3)
H3A0.52180.8559−0.38510.018*
C40.29553 (19)0.83388 (7)−0.39423 (14)0.0147 (3)
C50.21217 (19)0.83642 (7)−0.32661 (14)0.0146 (3)
H5A0.09560.8201−0.36630.017*
C60.30332 (18)0.86348 (7)−0.19869 (13)0.0121 (3)
C70.25808 (18)0.87570 (7)−0.10371 (13)0.0134 (3)
C80.08984 (18)0.86327 (8)−0.11207 (14)0.0151 (3)
H8A0.05320.8159−0.13710.018*
H8B−0.00390.8926−0.18080.018*
C90.11639 (19)0.87798 (7)0.02130 (14)0.0151 (3)
H9A0.00070.88230.01030.018*
H9B0.18040.84020.08280.018*
C100.40804 (18)0.93513 (7)0.12006 (13)0.0127 (3)
H10A0.45820.98150.13520.015*
C110.40092 (18)0.90627 (7)0.00269 (13)0.0126 (3)
C120.2764 (2)0.80697 (9)−0.59457 (15)0.0215 (3)
H12A0.19410.7879−0.68250.032*
H12B0.38430.7801−0.54890.032*
H12C0.30460.8534−0.60380.032*
C130.51581 (18)0.89668 (7)0.24838 (13)0.0129 (3)
C140.58947 (19)0.93146 (8)0.36854 (14)0.0148 (3)
H14A0.57340.97870.36800.018*
C150.68530 (19)0.89756 (8)0.48799 (14)0.0153 (3)
H15A0.73540.92150.56900.018*
C160.70801 (18)0.82823 (7)0.48899 (13)0.0145 (3)
C170.63921 (19)0.79301 (8)0.37083 (14)0.0157 (3)
H17A0.65720.74590.37160.019*
C180.54363 (18)0.82783 (7)0.25149 (14)0.0146 (3)
H18A0.49650.80400.17070.018*
C190.8048 (2)0.72675 (8)0.61618 (16)0.0229 (3)
H19A0.86050.71180.70800.034*
H19B0.87370.71080.58140.034*
H19C0.68550.70840.56250.034*
O30.88167 (13)0.95821 (5)0.11028 (10)0.0169 (2)
O41.16310 (14)0.97876 (6)0.26577 (10)0.0201 (2)
C201.00753 (19)0.96657 (7)0.23013 (14)0.0147 (3)
C210.9666 (2)0.96257 (9)0.33549 (16)0.0247 (4)
H21A1.07660.96120.42310.037*
H21B0.89840.92180.32230.037*
H21C0.89841.00220.32940.037*
U11U22U33U12U13U23
O10.0193 (5)0.0309 (6)0.0152 (5)−0.0070 (5)0.0118 (5)−0.0087 (4)
O20.0180 (5)0.0186 (6)0.0123 (5)0.0002 (4)0.0055 (4)0.0019 (4)
N10.0116 (5)0.0171 (6)0.0119 (5)−0.0026 (5)0.0068 (5)−0.0014 (4)
N20.0131 (5)0.0170 (6)0.0120 (5)0.0009 (5)0.0071 (5)−0.0009 (4)
C10.0138 (6)0.0131 (7)0.0121 (6)0.0008 (5)0.0072 (5)−0.0006 (5)
C20.0129 (6)0.0167 (7)0.0166 (7)−0.0008 (5)0.0091 (6)0.0000 (5)
C30.0168 (7)0.0168 (7)0.0172 (7)−0.0009 (6)0.0124 (6)−0.0006 (5)
C40.0160 (6)0.0158 (7)0.0135 (6)−0.0011 (6)0.0090 (6)−0.0017 (5)
C50.0135 (6)0.0167 (7)0.0148 (6)−0.0014 (5)0.0085 (6)−0.0015 (5)
C60.0122 (6)0.0129 (7)0.0124 (6)0.0008 (5)0.0075 (5)0.0010 (5)
C70.0134 (6)0.0157 (7)0.0134 (6)0.0000 (5)0.0088 (5)−0.0002 (5)
C80.0132 (6)0.0189 (7)0.0149 (6)−0.0029 (5)0.0088 (5)−0.0029 (5)
C90.0130 (6)0.0186 (7)0.0159 (6)−0.0019 (5)0.0092 (6)−0.0020 (5)
C100.0118 (6)0.0144 (7)0.0128 (6)−0.0005 (5)0.0073 (5)−0.0009 (5)
C110.0130 (6)0.0137 (7)0.0126 (6)−0.0002 (5)0.0081 (5)0.0004 (5)
C120.0241 (8)0.0294 (9)0.0168 (7)−0.0058 (7)0.0149 (7)−0.0066 (6)
C130.0112 (6)0.0163 (7)0.0127 (6)−0.0008 (5)0.0077 (5)0.0005 (5)
C140.0151 (6)0.0146 (7)0.0159 (6)−0.0012 (5)0.0093 (6)−0.0016 (5)
C150.0149 (6)0.0185 (7)0.0121 (6)−0.0037 (5)0.0072 (5)−0.0042 (5)
C160.0107 (6)0.0202 (7)0.0125 (6)−0.0007 (5)0.0063 (5)0.0009 (5)
C170.0173 (7)0.0146 (7)0.0154 (6)0.0006 (5)0.0091 (6)−0.0004 (5)
C180.0160 (6)0.0155 (7)0.0124 (6)−0.0019 (5)0.0078 (6)−0.0033 (5)
C190.0244 (8)0.0191 (8)0.0199 (7)0.0013 (6)0.0088 (7)0.0042 (6)
O30.0134 (5)0.0211 (6)0.0150 (5)−0.0002 (4)0.0071 (4)−0.0001 (4)
O40.0139 (5)0.0313 (6)0.0166 (5)−0.0045 (4)0.0092 (4)−0.0069 (4)
C200.0152 (6)0.0157 (7)0.0152 (6)0.0003 (5)0.0097 (6)−0.0008 (5)
C210.0240 (8)0.0365 (10)0.0200 (8)−0.0023 (7)0.0163 (7)−0.0010 (7)
O1—C41.3811 (17)C9—H9B0.9900
O1—C121.4283 (17)C10—C111.4982 (18)
O2—C161.3708 (17)C10—C131.5108 (19)
O2—C191.4263 (19)C10—H10A1.0000
N1—C111.3784 (17)C12—H12A0.9800
N1—C11.3855 (17)C12—H12B0.9800
N1—H20.9001C12—H12C0.9800
N2—C91.4972 (19)C13—C181.389 (2)
N2—C101.5148 (17)C13—C141.4028 (19)
N2—H10.9296C14—C151.385 (2)
N2—H30.9674C14—H14A0.9500
C1—C21.3918 (18)C15—C161.393 (2)
C1—C61.4182 (19)C15—H15A0.9500
C2—C31.390 (2)C16—C171.3929 (19)
C2—H2A0.9500C17—C181.393 (2)
C3—C41.406 (2)C17—H17A0.9500
C3—H3A0.9500C18—H18A0.9500
C4—C51.3882 (18)C19—H19A0.9800
C5—C61.4001 (19)C19—H19B0.9800
C5—H5A0.9500C19—H19C0.9800
C6—C71.4371 (18)O3—C201.2717 (17)
C7—C111.3707 (19)O4—C201.2573 (17)
C7—C81.4993 (19)C20—C211.512 (2)
C8—C91.5213 (19)C21—H21A0.9800
C8—H8A0.9900C21—H21B0.9800
C8—H8B0.9900C21—H21C0.9800
C9—H9A0.9900
C4—O1—C12116.63 (11)C13—C10—N2111.40 (11)
C16—O2—C19117.59 (11)C11—C10—H10A107.7
C11—N1—C1107.65 (11)C13—C10—H10A107.7
C11—N1—H2127.8N2—C10—H10A107.7
C1—N1—H2124.4C7—C11—N1110.93 (12)
C9—N2—C10112.73 (11)C7—C11—C10125.72 (12)
C9—N2—H1109.2N1—C11—C10123.06 (12)
C10—N2—H1105.0O1—C12—H12A109.5
C9—N2—H3109.6O1—C12—H12B109.5
C10—N2—H3110.9H12A—C12—H12B109.5
H1—N2—H3109.2O1—C12—H12C109.5
N1—C1—C2130.25 (13)H12A—C12—H12C109.5
N1—C1—C6108.34 (11)H12B—C12—H12C109.5
C2—C1—C6121.36 (12)C18—C13—C14118.77 (13)
C3—C2—C1118.27 (13)C18—C13—C10122.18 (12)
C3—C2—H2A120.9C14—C13—C10119.04 (13)
C1—C2—H2A120.9C15—C14—C13120.61 (14)
C2—C3—C4120.81 (12)C15—C14—H14A119.7
C2—C3—H3A119.6C13—C14—H14A119.7
C4—C3—H3A119.6C14—C15—C16119.76 (13)
O1—C4—C5115.49 (12)C14—C15—H15A120.1
O1—C4—C3123.33 (12)C16—C15—H15A120.1
C5—C4—C3121.18 (13)O2—C16—C17123.73 (13)
C4—C5—C6118.67 (13)O2—C16—C15115.76 (12)
C4—C5—H5A120.7C17—C16—C15120.50 (13)
C6—C5—H5A120.7C18—C17—C16119.06 (14)
C5—C6—C1119.71 (12)C18—C17—H17A120.5
C5—C6—C7133.71 (13)C16—C17—H17A120.5
C1—C6—C7106.56 (12)C13—C18—C17121.27 (13)
C11—C7—C6106.50 (12)C13—C18—H18A119.4
C11—C7—C8123.00 (12)C17—C18—H18A119.4
C6—C7—C8130.41 (13)O2—C19—H19A109.5
C7—C8—C9109.54 (11)O2—C19—H19B109.5
C7—C8—H8A109.8H19A—C19—H19B109.5
C9—C8—H8A109.8O2—C19—H19C109.5
C7—C8—H8B109.8H19A—C19—H19C109.5
C9—C8—H8B109.8H19B—C19—H19C109.5
H8A—C8—H8B108.2O4—C20—O3123.85 (13)
N2—C9—C8110.37 (11)O4—C20—C21118.25 (13)
N2—C9—H9A109.6O3—C20—C21117.90 (13)
C8—C9—H9A109.6C20—C21—H21A109.5
N2—C9—H9B109.6C20—C21—H21B109.5
C8—C9—H9B109.6H21A—C21—H21B109.5
H9A—C9—H9B108.1C20—C21—H21C109.5
C11—C10—C13116.38 (12)H21A—C21—H21C109.5
C11—C10—N2105.57 (11)H21B—C21—H21C109.5
C11—N1—C1—C2177.32 (15)C6—C7—C11—N1−0.96 (16)
C11—N1—C1—C6−0.18 (15)C8—C7—C11—N1−177.99 (13)
N1—C1—C2—C3−177.32 (14)C6—C7—C11—C10173.05 (13)
C6—C1—C2—C3−0.1 (2)C8—C7—C11—C10−4.0 (2)
C1—C2—C3—C4−0.2 (2)C1—N1—C11—C70.73 (16)
C12—O1—C4—C5176.19 (13)C1—N1—C11—C10−173.47 (13)
C12—O1—C4—C3−3.9 (2)C13—C10—C11—C7108.15 (16)
C2—C3—C4—O1−179.57 (14)N2—C10—C11—C7−15.97 (19)
C2—C3—C4—C50.4 (2)C13—C10—C11—N1−78.52 (17)
O1—C4—C5—C6179.77 (13)N2—C10—C11—N1157.36 (13)
C3—C4—C5—C6−0.2 (2)C11—C10—C13—C18−26.91 (19)
C4—C5—C6—C1−0.1 (2)N2—C10—C13—C1894.16 (15)
C4—C5—C6—C7177.79 (15)C11—C10—C13—C14153.50 (12)
N1—C1—C6—C5178.05 (13)N2—C10—C13—C14−85.42 (15)
C2—C1—C6—C50.3 (2)C18—C13—C14—C15−1.2 (2)
N1—C1—C6—C7−0.39 (15)C10—C13—C14—C15178.38 (12)
C2—C1—C6—C7−178.16 (13)C13—C14—C15—C16−0.4 (2)
C5—C6—C7—C11−177.31 (16)C19—O2—C16—C17−6.2 (2)
C1—C6—C7—C110.82 (16)C19—O2—C16—C15172.50 (13)
C5—C6—C7—C8−0.6 (3)C14—C15—C16—O2−176.91 (12)
C1—C6—C7—C8177.54 (14)C14—C15—C16—C171.8 (2)
C11—C7—C8—C9−9.9 (2)O2—C16—C17—C18177.02 (13)
C6—C7—C8—C9173.87 (14)C15—C16—C17—C18−1.6 (2)
C10—N2—C9—C8−69.07 (14)C14—C13—C18—C171.4 (2)
C7—C8—C9—N243.56 (16)C10—C13—C18—C17−178.14 (13)
C9—N2—C10—C1151.16 (14)C16—C17—C18—C13−0.1 (2)
C9—N2—C10—C13−76.04 (14)
D—H···AD—HH···AD···AD—H···A
N2—H1···O3i0.931.862.7762 (15)169
N1—H2···O30.901.932.7895 (19)160
N2—H3···O4ii0.971.722.6800 (18)171
C9—H9A···O3ii0.992.523.285 (2)134
C10—H10A···N1i1.002.553.4038 (19)143
C15—H15A···O4iii0.952.603.5073 (19)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯O3i0.931.862.7762 (15)169
N1—H2⋯O30.901.932.7895 (19)160
N2—H3⋯O4ii0.971.722.6800 (18)171
C9—H9A⋯O3ii0.992.523.285 (2)134
C10—H10A⋯N1i1.002.553.4038 (19)143
C15—H15A⋯O4iii0.952.603.5073 (19)160

Symmetry codes: (i) ; (ii) ; (iii) .

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