Literature DB >> 22590327

5H-Imidazo[4,5-f][1,10]phenanthroline.

Shao-Wei Tong, Wen-Dong Song, Dong-Liang Miao, Jing-Bo An.   

Abstract

The title mol-ecule, C(13)H(8)N(4), is is essentially planar [r.m.s. deviation for all non-H atoms = 0.025 (3) Å]. In the crystal, mol-ecules are connected through one weak bifurcated N-H⋯(N,N) hydrogen bond and three π-π stacking inter-actions between pyridine and imidazole rings [centroid-centroid distance = 3.631 (8) Å] and between pyridine and benzene rings [centroid-centroid distances = 3.675 (5) and 3.666 (2) Å].

Entities:  

Year:  2012        PMID: 22590327      PMCID: PMC3344565          DOI: 10.1107/S1600536812016595

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our previous work based on 1,10-phenanthroline as anauxiliary ligand, see: Song et al. (2009 ▶); Hao et al. (2008 ▶). For background to 1,10-phenanthroline complexes, see: Chesnut et al. (1999 ▶).

Experimental

Crystal data

C13H8N4 M = 220.23 Orthorhombic, a = 14.569 (2) Å b = 7.8623 (12) Å c = 17.042 (3) Å V = 1952.1 (5) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.26 × 0.18 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.980, T max = 0.985 5772 measured reflections 1756 independent reflections 1025 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.123 S = 1.00 1756 reflections 186 parameters All H-atom parameters refined Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812016595/bx2404sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016595/bx2404Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812016595/bx2404Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8N4F(000) = 912
Mr = 220.23Dx = 1.499 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 799 reflections
a = 14.569 (2) Åθ = 2.2–27.5°
b = 7.8623 (12) ŵ = 0.10 mm1
c = 17.042 (3) ÅT = 296 K
V = 1952.1 (5) Å3Block, yellow
Z = 80.26 × 0.18 × 0.16 mm
Bruker APEXII CCD diffractometer1756 independent reflections
Radiation source: fine-focus sealed tube1025 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.053
φ and ω scansθmax = 25.2°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −17→10
Tmin = 0.980, Tmax = 0.985k = −9→9
5772 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123All H-atom parameters refined
S = 1.00w = 1/[σ2(Fo2) + (0.0606P)2] where P = (Fo2 + 2Fc2)/3
1756 reflections(Δ/σ)max < 0.001
186 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.08583 (13)0.0741 (3)0.18218 (11)0.0428 (6)
C130.17857 (16)0.0868 (3)0.18200 (12)0.0349 (6)
C40.22247 (15)0.1620 (3)0.25102 (12)0.0347 (6)
N10.16716 (13)0.2161 (3)0.30974 (10)0.0423 (6)
C50.31923 (15)0.1740 (3)0.25518 (12)0.0355 (6)
N30.46339 (14)0.1051 (3)0.17574 (13)0.0471 (6)
N40.39502 (14)−0.0018 (3)0.06803 (11)0.0449 (6)
C110.09449 (19)−0.0623 (4)0.05615 (15)0.0487 (7)
C120.04717 (19)−0.0004 (3)0.12071 (16)0.0494 (7)
C30.20665 (19)0.2840 (3)0.37251 (14)0.0460 (7)
C20.30087 (18)0.3045 (3)0.38092 (14)0.0439 (7)
C10.35746 (19)0.2504 (3)0.32252 (13)0.0416 (6)
C60.37040 (15)0.1101 (3)0.18996 (12)0.0365 (6)
C70.4727 (2)0.0392 (3)0.10225 (15)0.0514 (7)
C80.32970 (16)0.0437 (3)0.12418 (12)0.0373 (6)
C90.23250 (15)0.0280 (3)0.11878 (12)0.0356 (6)
C100.18762 (19)−0.0478 (3)0.05489 (14)0.0445 (7)
H70.5396 (16)0.027 (3)0.0759 (12)0.042 (6)*
H60.2264 (16)−0.088 (3)0.0121 (15)0.056 (8)*
H4−0.0192 (17)−0.012 (3)0.1232 (13)0.045 (7)*
H10.4230 (16)0.270 (3)0.3229 (13)0.051 (8)*
H50.0590 (16)−0.125 (3)0.0140 (15)0.063 (8)*
H30.1640 (15)0.322 (3)0.4153 (13)0.046 (7)*
H20.3235 (16)0.353 (3)0.4266 (14)0.053 (7)*
H80.5057 (19)0.136 (4)0.2135 (18)0.074 (9)*
U11U22U33U12U13U23
N20.0304 (12)0.0574 (14)0.0407 (12)−0.0012 (10)−0.0020 (9)0.0005 (10)
C130.0326 (13)0.0403 (15)0.0318 (12)−0.0009 (11)−0.0029 (11)0.0052 (10)
C40.0343 (13)0.0379 (14)0.0319 (11)0.0024 (12)0.0035 (11)0.0054 (10)
N10.0396 (12)0.0519 (14)0.0355 (11)0.0021 (10)0.0037 (10)0.0001 (9)
C50.0350 (14)0.0389 (14)0.0326 (12)−0.0016 (11)−0.0027 (11)0.0075 (10)
N30.0308 (12)0.0644 (15)0.0462 (13)0.0046 (11)−0.0024 (11)0.0001 (11)
N40.0334 (12)0.0646 (15)0.0368 (11)0.0021 (11)0.0034 (10)0.0000 (10)
C110.0435 (17)0.0584 (18)0.0441 (15)−0.0023 (14)−0.0125 (13)−0.0028 (13)
C120.0326 (15)0.0651 (19)0.0505 (15)−0.0029 (14)−0.0084 (13)−0.0022 (13)
C30.0488 (17)0.0546 (18)0.0346 (14)0.0041 (13)0.0018 (12)−0.0029 (11)
C20.0511 (17)0.0462 (16)0.0344 (13)−0.0027 (13)−0.0045 (12)−0.0036 (11)
C10.0403 (15)0.0443 (15)0.0403 (14)−0.0014 (13)−0.0053 (13)0.0029 (11)
C60.0305 (13)0.0445 (15)0.0344 (12)0.0013 (11)0.0015 (10)0.0047 (11)
C70.0401 (17)0.0647 (19)0.0495 (15)0.0122 (15)0.0068 (14)0.0010 (13)
C80.0335 (14)0.0447 (16)0.0338 (12)0.0021 (12)0.0013 (11)0.0039 (10)
C90.0375 (14)0.0372 (14)0.0321 (12)0.0020 (11)−0.0006 (10)0.0048 (10)
C100.0471 (17)0.0518 (17)0.0346 (13)0.0026 (14)−0.0025 (12)0.0009 (11)
N2—C121.326 (3)C11—C101.362 (4)
N2—C131.355 (3)C11—C121.387 (4)
C13—C91.411 (3)C11—H51.01 (3)
C13—C41.464 (3)C12—H40.97 (2)
C4—N11.353 (3)C3—C21.390 (4)
C4—C51.415 (3)C3—H31.00 (2)
N1—C31.327 (3)C2—C11.360 (3)
C5—C11.410 (3)C2—H20.93 (2)
C5—C61.429 (3)C1—H10.97 (2)
N3—C71.362 (3)C6—C81.372 (3)
N3—C61.377 (3)C7—H71.08 (2)
N3—H80.92 (3)C8—C91.424 (3)
N4—C71.314 (3)C9—C101.403 (3)
N4—C81.396 (3)C10—H60.98 (3)
C12—N2—C13117.0 (2)C2—C3—H3120.2 (13)
N2—C13—C9122.2 (2)C1—C2—C3119.2 (2)
N2—C13—C4117.63 (19)C1—C2—H2121.8 (15)
C9—C13—C4120.2 (2)C3—C2—H2119.0 (15)
N1—C4—C5122.4 (2)C2—C1—C5119.3 (2)
N1—C4—C13117.4 (2)C2—C1—H1123.0 (14)
C5—C4—C13120.16 (19)C5—C1—H1117.5 (14)
C3—N1—C4117.7 (2)C8—C6—N3105.7 (2)
C1—C5—C4117.6 (2)C8—C6—C5122.9 (2)
C1—C5—C6125.2 (2)N3—C6—C5131.3 (2)
C4—C5—C6117.2 (2)N4—C7—N3114.5 (2)
C7—N3—C6105.7 (2)N4—C7—H7124.9 (11)
C7—N3—H8132.4 (17)N3—C7—H7120.5 (11)
C6—N3—H8121.7 (17)C6—C8—N4111.3 (2)
C7—N4—C8102.7 (2)C6—C8—C9121.0 (2)
C10—C11—C12118.6 (2)N4—C8—C9127.7 (2)
C10—C11—H5122.6 (13)C10—C9—C13118.2 (2)
C12—C11—H5118.7 (13)C10—C9—C8123.4 (2)
N2—C12—C11124.8 (2)C13—C9—C8118.4 (2)
N2—C12—H4115.4 (14)C11—C10—C9119.2 (2)
C11—C12—H4119.7 (14)C11—C10—H6124.2 (14)
N1—C3—C2123.9 (2)C9—C10—H6116.6 (14)
N1—C3—H3115.9 (13)
D—H···AD—HH···AD···AD—H···A
N3—H8···N1i0.92 (3)2.47 (3)3.104 (3)126 (2)
N3—H8···N2i0.92 (3)2.18 (3)3.017 (3)150 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H8⋯N1i0.92 (3)2.47 (3)3.104 (3)126 (2)
N3—H8⋯N2i0.92 (3)2.18 (3)3.017 (3)150 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tetra-aqua-(1,10-phenanthroline-κN,N')magnesium(II) bis-[(2,4-dichloro-phen-yl)acetate].

Authors:  Xiao-Min Hao; Chang-Sheng Gu; Weng-Dong Song; Ji-Wei Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-23

3.  catena-Poly[[diaqua-(1,10-phenanthroline-κN,N')nickel(II)]-μ-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O].

Authors:  Wen-Dong Song; Hao Wang; Shi-Wei Hu; Pei-Wen Qin; Shi-Jie Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29
  3 in total

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