Literature DB >> 22590312

Dimethyl 3-(cyclo-propyl-carbon-yl)pyrrolo-[2,1-a]isoquinoline-1,2-dicarboxyl-ate.

Honglong Xing, Fan Tang, Wei Wang.   

Abstract

In the mol-ecular structure of the title compound, C(20)H(17)NO(5), two intra-molecular C-H⋯O hydrogen bond generate six- and seven-membered ring motifs. The dihedral angles between the almost planar 13-atom triple-fused-ring system (r.m.s. deviation = 0.003 Å) and the planes of the two meth-oxy-carbonyl substituents are 61.7 (2) and 33.01 (10)°.

Entities:  

Year:  2012        PMID: 22590312      PMCID: PMC3344550          DOI: 10.1107/S1600536812015656

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical background, see: Michael (2004 ▶); Sriram et al. (2005 ▶); Alonso et al. (1985 ▶). For the biological activity of indolizine derivatives, see: Shen et al. (2010 ▶).

Experimental

Crystal data

C20H17NO5 M = 351.35 Monoclinic, a = 7.5910 (15) Å b = 18.436 (4) Å c = 12.162 (2) Å β = 94.43 (3)° V = 1697.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (XCAD4; Harms & Wocadlo, 1995 ▶) T min = 0.971, T max = 0.990 3321 measured reflections 3078 independent reflections 2060 reflections with I > 2σ(I) R int = 0.048 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.179 S = 1.01 3078 reflections 235 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015656/ff2061sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015656/ff2061Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015656/ff2061Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H17NO5F(000) = 736
Mr = 351.35Dx = 1.375 Mg m3
Monoclinic, P21/cMelting point: 388 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.5910 (15) ÅCell parameters from 25 reflections
b = 18.436 (4) Åθ = 9–12°
c = 12.162 (2) ŵ = 0.10 mm1
β = 94.43 (3)°T = 293 K
V = 1697.0 (6) Å3Block, yellow
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer2060 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
Graphite monochromatorθmax = 25.3°, θmin = 2.0°
ω/2θ scansh = 0→9
Absorption correction: ψ scan (XCAD4; Harms & Wocadlo, 1995)k = 0→22
Tmin = 0.971, Tmax = 0.990l = −14→14
3321 measured reflections3 standard reflections every 200 reflections
3078 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.179H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.1P)2 + 0.4P] where P = (Fo2 + 2Fc2)/3
3078 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.2043 (3)0.45752 (11)0.56131 (17)0.0407 (5)
O10.0490 (3)0.31335 (12)0.57398 (18)0.0729 (7)
C10.0128 (5)0.2518 (2)0.7977 (3)0.0763 (10)
H1A0.00350.24740.87650.092*
H1B−0.09870.24850.75330.092*
O20.3127 (2)0.44915 (12)0.92593 (15)0.0583 (6)
C20.1687 (5)0.22111 (19)0.7524 (4)0.0815 (11)
H2A0.15370.19910.67990.098*
H2B0.25600.19790.80320.098*
O30.0196 (3)0.44054 (13)0.88912 (17)0.0657 (6)
C30.1495 (4)0.30195 (16)0.7597 (3)0.0591 (8)
H3A0.22470.32600.81790.071*
O40.4069 (3)0.64344 (13)0.76734 (18)0.0715 (7)
C40.1160 (4)0.34276 (15)0.6567 (2)0.0463 (7)
O50.1973 (3)0.59404 (11)0.86128 (17)0.0613 (6)
C50.2880 (5)0.4387 (3)1.0410 (3)0.0879 (13)
H5A0.40090.43811.08240.132*
H5B0.22870.39341.05070.132*
H5C0.21790.47761.06670.132*
C60.1646 (4)0.45114 (15)0.8593 (2)0.0462 (7)
C70.2330 (5)0.64687 (18)0.9471 (3)0.0694 (10)
H7A0.15100.64071.00260.104*
H7B0.22060.69470.91640.104*
H7C0.35130.64050.97950.104*
C80.3006 (3)0.59626 (15)0.7761 (2)0.0452 (7)
C90.2639 (3)0.53321 (14)0.7048 (2)0.0403 (6)
C100.2004 (3)0.46707 (14)0.7437 (2)0.0403 (6)
C110.1670 (3)0.41976 (14)0.6564 (2)0.0405 (6)
C120.2688 (3)0.52648 (14)0.5891 (2)0.0406 (6)
C130.1793 (3)0.43333 (16)0.4534 (2)0.0472 (7)
H13A0.13530.38700.43870.057*
C140.2183 (4)0.47657 (17)0.3706 (2)0.0555 (8)
H14A0.19570.46070.29830.067*
C150.2945 (4)0.54702 (17)0.3911 (2)0.0512 (7)
C160.3216 (3)0.57249 (15)0.5008 (2)0.0449 (7)
C170.3413 (4)0.5916 (2)0.3040 (3)0.0644 (9)
H17A0.32160.57540.23170.077*
C180.4146 (4)0.6579 (2)0.3238 (3)0.0693 (10)
H18A0.44290.68710.26540.083*
C190.4473 (4)0.68183 (18)0.4315 (3)0.0653 (9)
H19A0.50200.72640.44490.078*
C200.4002 (4)0.64068 (16)0.5189 (3)0.0553 (8)
H20A0.42060.65820.59050.066*
U11U22U33U12U13U23
N0.0414 (12)0.0421 (12)0.0390 (12)0.0036 (10)0.0048 (9)−0.0006 (10)
O10.0976 (17)0.0614 (14)0.0594 (14)−0.0228 (13)0.0031 (12)−0.0076 (11)
C10.076 (2)0.080 (3)0.075 (2)−0.0009 (19)0.0169 (19)0.0190 (19)
O20.0539 (12)0.0747 (15)0.0457 (12)0.0098 (11)0.0005 (9)0.0041 (10)
C20.101 (3)0.053 (2)0.092 (3)0.0147 (19)0.022 (2)0.0156 (19)
O30.0523 (12)0.0861 (16)0.0604 (13)−0.0108 (12)0.0159 (10)−0.0020 (12)
C30.074 (2)0.0412 (16)0.061 (2)−0.0008 (15)−0.0017 (16)0.0013 (14)
O40.0759 (15)0.0702 (15)0.0703 (15)−0.0316 (13)0.0186 (12)−0.0128 (12)
C40.0449 (15)0.0450 (16)0.0495 (16)0.0019 (13)0.0059 (12)−0.0051 (13)
O50.0749 (14)0.0487 (12)0.0634 (14)−0.0122 (10)0.0248 (11)−0.0177 (10)
C50.092 (3)0.130 (4)0.0406 (19)0.021 (3)−0.0004 (17)0.008 (2)
C60.0499 (16)0.0419 (15)0.0471 (16)0.0023 (13)0.0060 (13)−0.0026 (12)
C70.086 (2)0.062 (2)0.062 (2)−0.0102 (18)0.0194 (18)−0.0194 (17)
C80.0352 (13)0.0472 (16)0.0531 (17)−0.0003 (13)0.0036 (12)0.0001 (13)
C90.0349 (13)0.0427 (15)0.0437 (15)0.0056 (11)0.0049 (11)−0.0003 (12)
C100.0379 (13)0.0417 (15)0.0413 (15)0.0045 (11)0.0035 (11)0.0006 (11)
C110.0373 (13)0.0423 (15)0.0421 (15)0.0050 (11)0.0038 (11)0.0011 (12)
C120.0339 (13)0.0402 (14)0.0479 (16)0.0071 (11)0.0039 (11)0.0020 (12)
C130.0448 (15)0.0531 (17)0.0428 (16)0.0060 (13)−0.0014 (12)−0.0032 (13)
C140.0547 (17)0.069 (2)0.0426 (17)0.0116 (15)0.0020 (13)−0.0036 (15)
C150.0462 (15)0.0619 (19)0.0461 (17)0.0136 (14)0.0069 (12)0.0123 (14)
C160.0330 (13)0.0472 (16)0.0551 (17)0.0110 (12)0.0066 (11)0.0095 (13)
C170.0523 (18)0.083 (2)0.059 (2)0.0119 (17)0.0109 (14)0.0175 (18)
C180.057 (2)0.078 (2)0.075 (2)0.0110 (18)0.0161 (17)0.034 (2)
C190.0588 (19)0.0517 (18)0.087 (3)0.0033 (15)0.0161 (17)0.0196 (18)
C200.0491 (16)0.0516 (17)0.066 (2)0.0040 (14)0.0112 (14)0.0080 (15)
N—C131.385 (3)C6—C101.483 (4)
N—C121.395 (3)C7—H7A0.9600
N—C111.398 (3)C7—H7B0.9600
O1—C41.218 (3)C7—H7C0.9600
C1—C21.458 (5)C8—C91.464 (4)
C1—C31.490 (5)C9—C101.406 (4)
C1—H1A0.9700C9—C121.416 (4)
C1—H1B0.9700C10—C111.382 (4)
O2—C61.334 (3)C12—C161.449 (4)
O2—C51.440 (4)C13—C141.335 (4)
C2—C31.501 (4)C13—H13A0.9300
C2—H2A0.9700C14—C151.436 (4)
C2—H2B0.9700C14—H14A0.9300
O3—C61.201 (3)C15—C171.408 (4)
C3—C41.467 (4)C15—C161.414 (4)
C3—H3A0.9800C16—C201.402 (4)
O4—C81.197 (3)C17—C181.356 (5)
C4—C111.472 (4)C17—H17A0.9300
O5—C81.347 (3)C18—C191.387 (5)
O5—C71.438 (3)C18—H18A0.9300
C5—H5A0.9600C19—C201.376 (4)
C5—H5B0.9600C19—H19A0.9300
C5—H5C0.9600C20—H20A0.9300
C13—N—C12122.9 (2)H7B—C7—H7C109.5
C13—N—C11127.0 (2)O4—C8—O5121.8 (3)
C12—N—C11110.1 (2)O4—C8—C9128.5 (3)
C2—C1—C361.2 (2)O5—C8—C9109.6 (2)
C2—C1—H1A117.6C10—C9—C12107.1 (2)
C3—C1—H1A117.6C10—C9—C8122.9 (2)
C2—C1—H1B117.6C12—C9—C8129.8 (2)
C3—C1—H1B117.6C11—C10—C9109.7 (2)
H1A—C1—H1B114.8C11—C10—C6124.6 (2)
C6—O2—C5115.3 (2)C9—C10—C6125.7 (2)
C1—C2—C360.5 (2)C10—C11—N106.5 (2)
C1—C2—H2A117.7C10—C11—C4129.8 (2)
C3—C2—H2A117.7N—C11—C4123.5 (2)
C1—C2—H2B117.7N—C12—C9106.6 (2)
C3—C2—H2B117.7N—C12—C16117.8 (2)
H2A—C2—H2B114.8C9—C12—C16135.7 (3)
C4—C3—C1120.3 (3)C14—C13—N120.0 (3)
C4—C3—C2118.0 (3)C14—C13—H13A120.0
C1—C3—C258.3 (2)N—C13—H13A120.0
C4—C3—H3A116.0C13—C14—C15121.3 (3)
C1—C3—H3A116.0C13—C14—H14A119.4
C2—C3—H3A116.0C15—C14—H14A119.4
O1—C4—C3120.7 (3)C17—C15—C16119.3 (3)
O1—C4—C11121.4 (3)C17—C15—C14121.3 (3)
C3—C4—C11117.9 (2)C16—C15—C14119.4 (3)
C8—O5—C7116.7 (2)C20—C16—C15118.4 (3)
O2—C5—H5A109.5C20—C16—C12123.1 (3)
O2—C5—H5B109.5C15—C16—C12118.5 (3)
H5A—C5—H5B109.5C18—C17—C15121.1 (3)
O2—C5—H5C109.5C18—C17—H17A119.4
H5A—C5—H5C109.5C15—C17—H17A119.4
H5B—C5—H5C109.5C17—C18—C19119.7 (3)
O3—C6—O2124.1 (3)C17—C18—H18A120.1
O3—C6—C10123.9 (3)C19—C18—H18A120.1
O2—C6—C10111.9 (2)C20—C19—C18121.1 (3)
O5—C7—H7A109.5C20—C19—H19A119.5
O5—C7—H7B109.5C18—C19—H19A119.5
H7A—C7—H7B109.5C19—C20—C16120.4 (3)
O5—C7—H7C109.5C19—C20—H20A119.8
H7A—C7—H7C109.5C16—C20—H20A119.8
C2—C1—C3—C4106.2 (3)C3—C4—C11—C10−19.1 (4)
C1—C2—C3—C4−110.1 (3)O1—C4—C11—N−23.9 (4)
C1—C3—C4—O1−44.0 (4)C3—C4—C11—N155.6 (2)
C2—C3—C4—O123.8 (5)C13—N—C12—C9175.8 (2)
C1—C3—C4—C11136.5 (3)C11—N—C12—C9−2.7 (3)
C2—C3—C4—C11−155.7 (3)C13—N—C12—C16−3.9 (3)
C5—O2—C6—O3−4.7 (4)C11—N—C12—C16177.5 (2)
C5—O2—C6—C10176.1 (3)C10—C9—C12—N1.4 (3)
C7—O5—C8—O4−6.1 (4)C8—C9—C12—N−173.7 (2)
C7—O5—C8—C9172.0 (3)C10—C9—C12—C16−178.9 (3)
O4—C8—C9—C10150.7 (3)C8—C9—C12—C166.0 (5)
O5—C8—C9—C10−27.3 (3)C12—N—C13—C140.4 (4)
O4—C8—C9—C12−34.9 (5)C11—N—C13—C14178.7 (2)
O5—C8—C9—C12147.1 (3)N—C13—C14—C153.1 (4)
C12—C9—C10—C110.3 (3)C13—C14—C15—C17177.8 (3)
C8—C9—C10—C11175.9 (2)C13—C14—C15—C16−2.9 (4)
C12—C9—C10—C6−176.5 (2)C17—C15—C16—C20−2.2 (4)
C8—C9—C10—C6−1.0 (4)C14—C15—C16—C20178.5 (2)
O3—C6—C10—C11−63.4 (4)C17—C15—C16—C12178.6 (2)
O2—C6—C10—C11115.8 (3)C14—C15—C16—C12−0.8 (4)
O3—C6—C10—C9113.0 (3)N—C12—C16—C20−175.2 (2)
O2—C6—C10—C9−67.8 (3)C9—C12—C16—C205.1 (4)
C9—C10—C11—N−2.0 (3)N—C12—C16—C154.0 (3)
C6—C10—C11—N174.9 (2)C9—C12—C16—C15−175.7 (3)
C9—C10—C11—C4173.5 (2)C16—C15—C17—C181.2 (4)
C6—C10—C11—C4−9.6 (4)C14—C15—C17—C18−179.4 (3)
C13—N—C11—C10−175.5 (2)C15—C17—C18—C191.2 (5)
C12—N—C11—C102.9 (3)C17—C18—C19—C20−2.6 (5)
C13—N—C11—C48.6 (4)C18—C19—C20—C161.6 (5)
C12—N—C11—C4−172.9 (2)C15—C16—C20—C190.8 (4)
O1—C4—C11—C10161.3 (3)C12—C16—C20—C19−180.0 (3)
D—H···AD—HH···AD···AD—H···A
C13—H13A···O10.932.272.872 (4)122
C20—H20A···O40.932.183.019 (4)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13A⋯O10.932.272.872 (4)122
C20—H20A⋯O40.932.183.019 (4)150
  5 in total

1.  A short history of SHELX.

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3.  Synthesis and antiproliferative activity of indolizine derivatives incorporating a cyclopropylcarbonyl group against Hep-G2 cancer cell line.

Authors:  Yong-Miao Shen; Peng-Cheng Lv; Wu Chen; Peng-Gang Liu; Ming-Zhu Zhang; Hai-Liang Zhu
Journal:  Eur J Med Chem       Date:  2010-03-01       Impact factor: 6.514

Review 4.  Indolizidine and quinolizidine alkaloids.

Authors:  Joseph P Michael
Journal:  Nat Prod Rep       Date:  2004-09-14       Impact factor: 13.423

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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