Literature DB >> 22590294

2-Amino-3-[(E)-(2-hy-droxy-3-methyl-benzyl-idene)amino]-but-2-ene-dinitrile.

Elham S Aazam, Orhan Büyükgüngör.   

Abstract

The title compound, C(12)H(10)N(4)O, is a Schiff base obtained from the condensation of diamino-maleonitrile and 2-hy-droxy-3-methyl-benzaldehyde. The mol-ecule is roughly planar, with an r.m.s. deviation of 0.0354 Å, and adopts the phenol-imine tautomeric form. An intra-molecular O-H⋯N hydrogen bond involving the O-H group and the azomethine N atom generates an S(6) ring. In the crystal, there are two N-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590294      PMCID: PMC3344532          DOI: 10.1107/S1600536812015243

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of Schiff bases see: Da Silva et al. (2011 ▶) and for their use in coordination chemistry, see: Aazam et al. (2011 ▶); Kargar et al. (2009 ▶); Yeap et al. (2009 ▶). For graph-set notation, see: Bernstein et al., (1995 ▶). For related structures, see: Aazam & Büyükgüngör (2010 ▶); Hökelek et al. (2000 ▶); Odabaşoğlu et al. (2005 ▶); Rivera et al. (2006 ▶).

Experimental

Crystal data

C12H10N4O M = 226.24 Monoclinic, a = 6.9041 (6) Å b = 11.8791 (7) Å c = 14.0282 (11) Å β = 101.600 (7)° V = 1127.02 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.76 × 0.48 × 0.03 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.949, T max = 0.996 16504 measured reflections 2336 independent reflections 1700 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.132 S = 1.14 2336 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.16 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015243/go2051sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015243/go2051Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015243/go2051Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4OF(000) = 472
Mr = 226.24Dx = 1.333 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 16504 reflections
a = 6.9041 (6) Åθ = 2.3–28.0°
b = 11.8791 (7) ŵ = 0.09 mm1
c = 14.0282 (11) ÅT = 296 K
β = 101.600 (7)°Plate, brown
V = 1127.02 (15) Å30.76 × 0.48 × 0.03 mm
Z = 4
Stoe IPDS 2 diffractometer2336 independent reflections
Radiation source: fine-focus sealed tube1700 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.054
rotation method scansθmax = 26.5°, θmin = 2.3°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −8→8
Tmin = 0.949, Tmax = 0.996k = −14→14
16504 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.132w = 1/[σ2(Fo2) + (0.0644P)2 + 0.0085P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max < 0.001
2336 reflectionsΔρmax = 0.15 e Å3
168 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.008 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2927 (3)0.39788 (16)0.57527 (14)0.0412 (5)
C20.2741 (3)0.30861 (18)0.50843 (15)0.0451 (5)
C30.2980 (3)0.19643 (18)0.53978 (17)0.0507 (5)
C40.3421 (3)0.1774 (2)0.63866 (19)0.0579 (6)
H40.35810.10360.66090.069*
C50.3637 (3)0.2639 (2)0.70634 (17)0.0597 (6)
H50.39510.24800.77260.072*
C60.3382 (3)0.3731 (2)0.67447 (16)0.0518 (5)
H60.35140.43130.71960.062*
C70.2734 (4)0.1024 (2)0.4671 (2)0.0730 (7)
H7A0.37350.10810.42870.088*
H7B0.14520.10730.42540.088*
H7C0.28600.03150.50060.088*
C80.2653 (3)0.51404 (16)0.54458 (14)0.0426 (5)
H80.27850.56980.59200.051*
C90.2013 (3)0.65633 (15)0.42752 (14)0.0393 (5)
C100.1644 (3)0.68409 (16)0.33180 (14)0.0405 (5)
C110.2178 (3)0.74210 (17)0.50067 (15)0.0461 (5)
C120.1464 (3)0.80158 (18)0.30383 (15)0.0482 (5)
N10.2236 (2)0.54359 (13)0.45456 (11)0.0405 (4)
N20.1385 (3)0.61018 (17)0.25795 (15)0.0563 (5)
H2A0.112 (4)0.538 (3)0.2695 (19)0.077 (8)*
H2B0.130 (4)0.637 (2)0.199 (2)0.076 (8)*
N30.2305 (3)0.80465 (17)0.56309 (15)0.0664 (6)
N40.1280 (3)0.89245 (17)0.27921 (17)0.0709 (6)
O10.2304 (3)0.32719 (15)0.41171 (12)0.0668 (5)
H10.217 (4)0.400 (3)0.405 (2)0.081 (9)*
U11U22U33U12U13U23
C10.0386 (10)0.0447 (11)0.0419 (11)0.0035 (8)0.0116 (8)0.0071 (9)
C20.0471 (11)0.0469 (12)0.0413 (12)0.0045 (9)0.0090 (9)0.0061 (9)
C30.0485 (12)0.0429 (12)0.0594 (14)0.0028 (9)0.0076 (10)0.0095 (10)
C40.0520 (13)0.0504 (13)0.0705 (17)0.0023 (10)0.0108 (11)0.0236 (12)
C50.0649 (14)0.0679 (16)0.0466 (13)0.0040 (11)0.0120 (11)0.0215 (12)
C60.0563 (13)0.0597 (14)0.0417 (12)0.0015 (10)0.0149 (10)0.0064 (10)
C70.0825 (17)0.0444 (13)0.0863 (19)0.0090 (12)0.0027 (14)−0.0023 (13)
C80.0473 (11)0.0408 (11)0.0415 (12)0.0017 (8)0.0135 (8)0.0006 (9)
C90.0416 (10)0.0355 (10)0.0421 (11)−0.0004 (8)0.0113 (8)0.0004 (8)
C100.0430 (10)0.0345 (10)0.0436 (12)−0.0030 (8)0.0077 (8)0.0026 (8)
C110.0566 (13)0.0382 (11)0.0446 (12)0.0035 (9)0.0127 (10)0.0029 (10)
C120.0548 (12)0.0404 (12)0.0482 (12)−0.0029 (9)0.0072 (9)0.0055 (10)
N10.0450 (9)0.0367 (8)0.0411 (10)0.0015 (7)0.0114 (7)0.0039 (7)
N20.0836 (14)0.0420 (11)0.0416 (11)−0.0110 (10)0.0084 (9)0.0022 (9)
N30.0917 (15)0.0538 (12)0.0540 (12)0.0047 (10)0.0151 (11)−0.0096 (10)
N40.0901 (15)0.0433 (11)0.0779 (15)0.0048 (10)0.0134 (12)0.0155 (10)
O10.1120 (14)0.0444 (9)0.0415 (10)0.0164 (9)0.0098 (9)0.0023 (7)
C1—C61.395 (3)C7—H7C0.9600
C1—C21.404 (3)C8—N11.286 (2)
C1—C81.447 (3)C8—H80.9300
C2—O11.348 (3)C9—C101.356 (3)
C2—C31.403 (3)C9—N11.392 (2)
C3—C41.378 (3)C9—C111.434 (3)
C3—C71.499 (3)C10—N21.342 (3)
C4—C51.386 (4)C10—C121.448 (3)
C4—H40.9300C11—N31.138 (3)
C5—C61.372 (3)C12—N41.133 (3)
C5—H50.9300N2—H2A0.89 (3)
C6—H60.9300N2—H2B0.88 (3)
C7—H7A0.9600O1—H10.88 (3)
C7—H7B0.9600
C6—C1—C2118.59 (18)H7A—C7—H7B109.5
C6—C1—C8119.22 (19)C3—C7—H7C109.5
C2—C1—C8122.19 (18)H7A—C7—H7C109.5
O1—C2—C3117.37 (19)H7B—C7—H7C109.5
O1—C2—C1121.37 (18)N1—C8—C1122.86 (18)
C3—C2—C1121.26 (19)N1—C8—H8118.6
C4—C3—C2117.4 (2)C1—C8—H8118.6
C4—C3—C7122.3 (2)C10—C9—N1119.49 (17)
C2—C3—C7120.3 (2)C10—C9—C11120.52 (17)
C3—C4—C5122.7 (2)N1—C9—C11119.99 (17)
C3—C4—H4118.7N2—C10—C9125.07 (19)
C5—C4—H4118.7N2—C10—C12115.50 (19)
C6—C5—C4119.2 (2)C9—C10—C12119.43 (18)
C6—C5—H5120.4N3—C11—C9175.5 (2)
C4—C5—H5120.4N4—C12—C10177.7 (2)
C5—C6—C1120.9 (2)C8—N1—C9121.38 (16)
C5—C6—H6119.6C10—N2—H2A118.9 (17)
C1—C6—H6119.6C10—N2—H2B117.7 (18)
C3—C7—H7A109.5H2A—N2—H2B123 (2)
C3—C7—H7B109.5C2—O1—H1105.2 (19)
C6—C1—C2—O1179.99 (18)C2—C1—C6—C5−0.2 (3)
C8—C1—C2—O10.3 (3)C8—C1—C6—C5179.5 (2)
C6—C1—C2—C30.8 (3)C6—C1—C8—N1179.86 (18)
C8—C1—C2—C3−178.93 (19)C2—C1—C8—N1−0.4 (3)
O1—C2—C3—C4−179.80 (19)N1—C9—C10—N22.9 (3)
C1—C2—C3—C4−0.6 (3)C11—C9—C10—N2−177.18 (19)
O1—C2—C3—C7−0.5 (3)N1—C9—C10—C12−178.38 (17)
C1—C2—C3—C7178.8 (2)C11—C9—C10—C121.5 (3)
C2—C3—C4—C5−0.2 (3)C1—C8—N1—C9−178.97 (18)
C7—C3—C4—C5−179.5 (2)C10—C9—N1—C8177.62 (18)
C3—C4—C5—C60.8 (3)C11—C9—N1—C8−2.3 (3)
C4—C5—C6—C1−0.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.88 (3)1.83 (3)2.643 (2)153 (3)
N2—H2A···N4i0.89 (3)2.40 (3)3.156 (3)142 (2)
N2—H2B···N3ii0.88 (3)2.26 (3)3.098 (3)159 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.88 (3)1.83 (3)2.643 (2)153 (3)
N2—H2A⋯N4i0.89 (3)2.40 (3)3.156 (3)142 (2)
N2—H2B⋯N3ii0.88 (3)2.26 (3)3.098 (3)159 (2)

Symmetry codes: (i) ; (ii) .

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