Literature DB >> 22590287

4,4'-Dinitro-2,2'-[propane-1,3-diylbis(iminiumylmethanylyl-idene)]diphenolate.

Kwang Ha1.   

Abstract

The title compound, C(17)H(16)N(4)O(6), is a Schiff base, which is found as a bis-zwitterion in the solid state. The geometry around the iminium N atom indicates sp(2)-hybridization. The diiminiumpropyl-ene chain is in an approximate double-gauche conformation, with average N-C-C-C torsion angles of 69.3°. The zwitterion shows strong intra-molecular N-H⋯O hydrogen bonds between the iminium N and phenolate O atom. In the crystal, bifurcated N-H⋯(O,O) hydrogen bonds assemble pairs of molecules into inversion dimers.

Entities:  

Year:  2012        PMID: 22590287      PMCID: PMC3344525          DOI: 10.1107/S1600536812015504

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the related zwitterion, 4-nitro-2-{[(tricyclo­[3.3.1.13,7]decan-1-yl)iminium­yl]meth­yl}phenolate, see: Ha (2012 ▶).

Experimental

Crystal data

C17H16N4O6 M = 372.34 Orthorhombic, a = 11.5698 (5) Å b = 13.0393 (6) Å c = 22.0393 (10) Å V = 3324.9 (3) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 200 K 0.31 × 0.17 × 0.15 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.890, T max = 1.000 23432 measured reflections 4120 independent reflections 2286 reflections with I > 2σ(I) R int = 0.084

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.138 S = 1.03 4120 reflections 252 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015504/zl2472sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015504/zl2472Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N4O6F(000) = 1552
Mr = 372.34Dx = 1.488 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3572 reflections
a = 11.5698 (5) Åθ = 2.5–25.3°
b = 13.0393 (6) ŵ = 0.12 mm1
c = 22.0393 (10) ÅT = 200 K
V = 3324.9 (3) Å3Block, yellow
Z = 80.31 × 0.17 × 0.15 mm
Bruker SMART 1000 CCD diffractometer4120 independent reflections
Radiation source: fine-focus sealed tube2286 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.084
φ and ω scansθmax = 28.3°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −15→15
Tmin = 0.890, Tmax = 1.000k = −14→17
23432 measured reflectionsl = −28→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0572P)2 + 0.0212P] where P = (Fo2 + 2Fc2)/3
4120 reflections(Δ/σ)max < 0.001
252 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.18305 (12)0.22185 (11)0.21082 (6)0.0397 (4)
O20.63010 (14)0.28176 (13)0.05617 (7)0.0495 (4)
O30.50263 (15)0.25797 (13)−0.01460 (7)0.0522 (5)
O40.62220 (12)−0.00556 (11)0.48734 (6)0.0383 (4)
O50.96696 (14)−0.02327 (15)0.27155 (8)0.0636 (5)
O61.08562 (13)−0.02659 (13)0.34711 (8)0.0536 (5)
N10.52991 (16)0.26527 (13)0.03929 (9)0.0372 (4)
N20.34001 (16)0.22765 (13)0.29410 (8)0.0325 (4)
H2N0.491 (2)0.0128 (18)0.4342 (13)0.061 (8)*
N30.48198 (14)0.01663 (13)0.39362 (9)0.0300 (4)
H3N0.266 (3)0.2203 (19)0.2781 (13)0.079 (9)*
N40.98619 (16)−0.02418 (14)0.32658 (9)0.0388 (5)
C10.26324 (17)0.23326 (14)0.17156 (9)0.0293 (5)
C20.23969 (18)0.23465 (14)0.10807 (9)0.0321 (5)
H20.16190.22900.09470.038*
C30.32499 (18)0.24381 (14)0.06613 (9)0.0320 (5)
H30.30650.24330.02410.038*
C40.44063 (18)0.25404 (14)0.08474 (9)0.0296 (5)
C50.46937 (17)0.25358 (14)0.14490 (9)0.0294 (5)
H50.54790.26080.15670.035*
C60.38325 (17)0.24253 (14)0.18915 (9)0.0270 (4)
C70.41546 (18)0.23887 (14)0.25139 (9)0.0305 (5)
H70.49480.24490.26190.037*
C80.36602 (19)0.22306 (16)0.35868 (9)0.0349 (5)
H8A0.33650.28580.37870.042*
H8B0.45080.22080.36440.042*
C90.31172 (18)0.12934 (15)0.38808 (9)0.0330 (5)
H9A0.22850.12800.37770.040*
H9B0.31790.13640.43270.040*
C100.36533 (17)0.02741 (15)0.36953 (9)0.0320 (5)
H10A0.3166−0.02950.38470.038*
H10B0.36780.02290.32470.038*
C110.57442 (17)0.00744 (14)0.36110 (9)0.0274 (4)
H110.56650.00980.31820.033*
C120.68702 (17)−0.00597 (14)0.38544 (8)0.0261 (4)
C130.70501 (18)−0.01066 (14)0.45046 (9)0.0281 (4)
C140.82265 (18)−0.02299 (16)0.47050 (9)0.0353 (5)
H140.8382−0.02770.51270.042*
C150.91170 (18)−0.02810 (16)0.43079 (9)0.0347 (5)
H150.9885−0.03580.44530.042*
C160.89073 (17)−0.02195 (15)0.36768 (9)0.0293 (4)
C170.78028 (17)−0.01169 (14)0.34546 (9)0.0293 (5)
H170.7675−0.00850.30290.035*
U11U22U33U12U13U23
O10.0255 (8)0.0574 (10)0.0362 (9)−0.0014 (7)0.0025 (7)0.0090 (7)
O20.0335 (9)0.0701 (12)0.0450 (10)0.0044 (8)0.0064 (8)0.0105 (8)
O30.0570 (11)0.0726 (12)0.0269 (9)0.0072 (8)0.0058 (8)−0.0012 (7)
O40.0334 (8)0.0565 (10)0.0250 (8)0.0030 (7)0.0042 (7)0.0031 (6)
O50.0469 (11)0.1112 (16)0.0326 (10)0.0119 (10)0.0109 (8)0.0110 (9)
O60.0278 (9)0.0770 (13)0.0560 (11)0.0016 (8)0.0043 (8)0.0064 (9)
N10.0380 (11)0.0407 (11)0.0330 (11)0.0072 (8)0.0040 (9)0.0031 (8)
N20.0311 (10)0.0420 (11)0.0243 (10)0.0018 (8)−0.0008 (8)0.0051 (7)
N30.0304 (10)0.0370 (10)0.0225 (10)0.0030 (7)−0.0016 (8)−0.0009 (7)
N40.0323 (11)0.0474 (12)0.0367 (11)0.0026 (8)0.0050 (9)0.0073 (8)
C10.0265 (11)0.0295 (11)0.0318 (11)−0.0006 (8)−0.0022 (9)0.0047 (8)
C20.0304 (11)0.0321 (12)0.0336 (12)−0.0020 (9)−0.0048 (9)0.0041 (9)
C30.0391 (13)0.0284 (11)0.0285 (11)−0.0002 (9)−0.0043 (9)0.0018 (8)
C40.0306 (12)0.0312 (11)0.0271 (11)0.0023 (9)0.0029 (9)0.0029 (8)
C50.0241 (10)0.0316 (12)0.0324 (12)0.0015 (8)−0.0017 (9)0.0024 (8)
C60.0260 (10)0.0279 (11)0.0272 (11)0.0023 (8)−0.0019 (9)0.0040 (8)
C70.0285 (11)0.0314 (11)0.0315 (11)0.0009 (9)0.0011 (9)0.0022 (8)
C80.0368 (12)0.0418 (13)0.0260 (12)0.0022 (10)−0.0015 (9)0.0002 (9)
C90.0315 (12)0.0400 (13)0.0274 (11)0.0029 (9)0.0019 (9)0.0022 (9)
C100.0278 (11)0.0425 (13)0.0256 (11)0.0015 (9)−0.0017 (9)0.0013 (9)
C110.0324 (11)0.0280 (11)0.0218 (10)0.0010 (8)−0.0012 (9)−0.0004 (8)
C120.0288 (11)0.0263 (11)0.0233 (10)0.0014 (8)−0.0002 (8)0.0009 (7)
C130.0317 (11)0.0276 (11)0.0251 (11)−0.0018 (8)0.0004 (9)0.0010 (8)
C140.0331 (12)0.0469 (13)0.0260 (11)−0.0042 (10)−0.0033 (9)0.0041 (9)
C150.0284 (11)0.0414 (13)0.0344 (13)−0.0037 (10)−0.0029 (9)0.0040 (9)
C160.0300 (11)0.0306 (11)0.0274 (11)−0.0010 (8)0.0036 (9)0.0036 (8)
C170.0346 (12)0.0297 (11)0.0236 (10)−0.0003 (9)0.0011 (9)0.0015 (8)
O1—C11.277 (2)C5—H50.9500
O2—N11.236 (2)C6—C71.422 (3)
O3—N11.233 (2)C7—H70.9500
O4—C131.258 (2)C8—C91.519 (3)
O5—N41.233 (2)C8—H8A0.9900
O6—N41.237 (2)C8—H8B0.9900
N1—C41.446 (3)C9—C101.523 (3)
N2—C71.292 (2)C9—H9A0.9900
N2—C81.456 (3)C9—H9B0.9900
N2—H3N0.93 (3)C10—H10A0.9900
N3—C111.293 (3)C10—H10B0.9900
N3—C101.457 (3)C11—C121.420 (3)
N3—H2N0.90 (3)C11—H110.9500
N4—C161.429 (3)C12—C171.395 (3)
C1—C21.426 (3)C12—C131.449 (3)
C1—C61.447 (3)C13—C141.440 (3)
C2—C31.357 (3)C14—C151.353 (3)
C2—H20.9500C14—H140.9500
C3—C41.406 (3)C15—C161.414 (3)
C3—H30.9500C15—H150.9500
C4—C51.367 (3)C16—C171.375 (3)
C5—C61.402 (3)C17—H170.9500
O3—N1—O2122.92 (18)N2—C8—H8B109.4
O3—N1—C4118.46 (18)C9—C8—H8B109.4
O2—N1—C4118.62 (18)H8A—C8—H8B108.0
C7—N2—C8125.25 (19)C8—C9—C10114.79 (17)
C7—N2—H3N110.9 (18)C8—C9—H9A108.6
C8—N2—H3N123.8 (18)C10—C9—H9A108.6
C11—N3—C10124.97 (18)C8—C9—H9B108.6
C11—N3—H2N116.4 (16)C10—C9—H9B108.6
C10—N3—H2N118.5 (16)H9A—C9—H9B107.5
O5—N4—O6121.87 (18)N3—C10—C9111.32 (17)
O5—N4—C16118.95 (18)N3—C10—H10A109.4
O6—N4—C16119.19 (19)C9—C10—H10A109.4
O1—C1—C2121.84 (18)N3—C10—H10B109.4
O1—C1—C6121.70 (18)C9—C10—H10B109.4
C2—C1—C6116.44 (18)H10A—C10—H10B108.0
C3—C2—C1122.04 (19)N3—C11—C12124.13 (18)
C3—C2—H2119.0N3—C11—H11117.9
C1—C2—H2119.0C12—C11—H11117.9
C2—C3—C4120.12 (19)C17—C12—C11118.54 (17)
C2—C3—H3119.9C17—C12—C13120.74 (18)
C4—C3—H3119.9C11—C12—C13120.70 (17)
C5—C4—C3120.94 (19)O4—C13—C14121.84 (18)
C5—C4—N1119.89 (19)O4—C13—C12121.81 (18)
C3—C4—N1119.17 (18)C14—C13—C12116.34 (18)
C4—C5—C6120.15 (18)C15—C14—C13121.78 (19)
C4—C5—H5119.9C15—C14—H14119.1
C6—C5—H5119.9C13—C14—H14119.1
C5—C6—C7119.23 (18)C14—C15—C16120.17 (19)
C5—C6—C1120.30 (18)C14—C15—H15119.9
C7—C6—C1120.47 (18)C16—C15—H15119.9
N2—C7—C6121.97 (19)C17—C16—C15121.02 (18)
N2—C7—H7119.0C17—C16—N4119.63 (18)
C6—C7—H7119.0C15—C16—N4119.33 (18)
N2—C8—C9111.38 (17)C16—C17—C12119.93 (18)
N2—C8—H8A109.4C16—C17—H17120.0
C9—C8—H8A109.4C12—C17—H17120.0
O1—C1—C2—C3−178.08 (18)C11—N3—C10—C9−118.0 (2)
C6—C1—C2—C30.2 (3)C8—C9—C10—N369.0 (2)
C1—C2—C3—C4−1.1 (3)C10—N3—C11—C12−178.09 (18)
C2—C3—C4—C50.9 (3)N3—C11—C12—C17−178.00 (18)
C2—C3—C4—N1−179.06 (17)N3—C11—C12—C130.3 (3)
O3—N1—C4—C5174.81 (18)C17—C12—C13—O4179.94 (17)
O2—N1—C4—C5−5.2 (3)C11—C12—C13—O41.7 (3)
O3—N1—C4—C3−5.2 (3)C17—C12—C13—C14−0.9 (3)
O2—N1—C4—C3174.75 (18)C11—C12—C13—C14−179.17 (17)
C3—C4—C5—C60.2 (3)O4—C13—C14—C15−179.76 (19)
N1—C4—C5—C6−179.88 (17)C12—C13—C14—C151.1 (3)
C4—C5—C6—C7177.95 (18)C13—C14—C15—C16−0.4 (3)
C4—C5—C6—C1−1.0 (3)C14—C15—C16—C17−0.6 (3)
O1—C1—C6—C5179.14 (18)C14—C15—C16—N4178.00 (18)
C2—C1—C6—C50.8 (3)O5—N4—C16—C17−4.5 (3)
O1—C1—C6—C70.2 (3)O6—N4—C16—C17175.25 (19)
C2—C1—C6—C7−178.14 (17)O5—N4—C16—C15176.89 (18)
C8—N2—C7—C6179.92 (17)O6—N4—C16—C15−3.4 (3)
C5—C6—C7—N2−179.22 (18)C15—C16—C17—C120.8 (3)
C1—C6—C7—N2−0.2 (3)N4—C16—C17—C12−177.83 (17)
C7—N2—C8—C9−128.3 (2)C11—C12—C17—C16178.29 (17)
N2—C8—C9—C1069.6 (2)C13—C12—C17—C160.0 (3)
D—H···AD—HH···AD···AD—H···A
N2—H3N···O10.93 (3)1.77 (3)2.583 (2)145 (3)
N3—H2N···O40.90 (3)1.93 (3)2.642 (2)135 (2)
N3—H2N···O4i0.90 (3)2.17 (3)2.891 (2)136 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H3N⋯O10.93 (3)1.77 (3)2.583 (2)145 (3)
N3—H2N⋯O40.90 (3)1.93 (3)2.642 (2)135 (2)
N3—H2N⋯O4i0.90 (3)2.17 (3)2.891 (2)136 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Nitro-2-{[(tricyclo-[3.3.1.1(3,7)]decan-1-yl)iminium-yl]meth-yl}phenolate.

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-28

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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