| Literature DB >> 22590287 |
Kwang Ha1.
Abstract
The title compound, C(17)H(16)N(4)O(6), is a Schiff base, which is found as a bis-zwitterion in the solid state. The geometry around the iminium N atom indicates sp(2)-hybridization. The diiminiumpropyl-ene chain is in an approximate double-gauche conformation, with average N-C-C-C torsion angles of 69.3°. The zwitterion shows strong intra-molecular N-H⋯O hydrogen bonds between the iminium N and phenolate O atom. In the crystal, bifurcated N-H⋯(O,O) hydrogen bonds assemble pairs of molecules into inversion dimers.Entities:
Year: 2012 PMID: 22590287 PMCID: PMC3344525 DOI: 10.1107/S1600536812015504
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H16N4O6 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 3572 reflections |
| θ = 2.5–25.3° | |
| µ = 0.12 mm−1 | |
| Block, yellow | |
| 0.31 × 0.17 × 0.15 mm |
| Bruker SMART 1000 CCD diffractometer | 4120 independent reflections |
| Radiation source: fine-focus sealed tube | 2286 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.3°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 23432 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4120 reflections | (Δ/σ)max < 0.001 |
| 252 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.18305 (12) | 0.22185 (11) | 0.21082 (6) | 0.0397 (4) | |
| O2 | 0.63010 (14) | 0.28176 (13) | 0.05617 (7) | 0.0495 (4) | |
| O3 | 0.50263 (15) | 0.25797 (13) | −0.01460 (7) | 0.0522 (5) | |
| O4 | 0.62220 (12) | −0.00556 (11) | 0.48734 (6) | 0.0383 (4) | |
| O5 | 0.96696 (14) | −0.02327 (15) | 0.27155 (8) | 0.0636 (5) | |
| O6 | 1.08562 (13) | −0.02659 (13) | 0.34711 (8) | 0.0536 (5) | |
| N1 | 0.52991 (16) | 0.26527 (13) | 0.03929 (9) | 0.0372 (4) | |
| N2 | 0.34001 (16) | 0.22765 (13) | 0.29410 (8) | 0.0325 (4) | |
| H2N | 0.491 (2) | 0.0128 (18) | 0.4342 (13) | 0.061 (8)* | |
| N3 | 0.48198 (14) | 0.01663 (13) | 0.39362 (9) | 0.0300 (4) | |
| H3N | 0.266 (3) | 0.2203 (19) | 0.2781 (13) | 0.079 (9)* | |
| N4 | 0.98619 (16) | −0.02418 (14) | 0.32658 (9) | 0.0388 (5) | |
| C1 | 0.26324 (17) | 0.23326 (14) | 0.17156 (9) | 0.0293 (5) | |
| C2 | 0.23969 (18) | 0.23465 (14) | 0.10807 (9) | 0.0321 (5) | |
| H2 | 0.1619 | 0.2290 | 0.0947 | 0.038* | |
| C3 | 0.32499 (18) | 0.24381 (14) | 0.06613 (9) | 0.0320 (5) | |
| H3 | 0.3065 | 0.2433 | 0.0241 | 0.038* | |
| C4 | 0.44063 (18) | 0.25404 (14) | 0.08474 (9) | 0.0296 (5) | |
| C5 | 0.46937 (17) | 0.25358 (14) | 0.14490 (9) | 0.0294 (5) | |
| H5 | 0.5479 | 0.2608 | 0.1567 | 0.035* | |
| C6 | 0.38325 (17) | 0.24253 (14) | 0.18915 (9) | 0.0270 (4) | |
| C7 | 0.41546 (18) | 0.23887 (14) | 0.25139 (9) | 0.0305 (5) | |
| H7 | 0.4948 | 0.2449 | 0.2619 | 0.037* | |
| C8 | 0.36602 (19) | 0.22306 (16) | 0.35868 (9) | 0.0349 (5) | |
| H8A | 0.3365 | 0.2858 | 0.3787 | 0.042* | |
| H8B | 0.4508 | 0.2208 | 0.3644 | 0.042* | |
| C9 | 0.31172 (18) | 0.12934 (15) | 0.38808 (9) | 0.0330 (5) | |
| H9A | 0.2285 | 0.1280 | 0.3777 | 0.040* | |
| H9B | 0.3179 | 0.1364 | 0.4327 | 0.040* | |
| C10 | 0.36533 (17) | 0.02741 (15) | 0.36953 (9) | 0.0320 (5) | |
| H10A | 0.3166 | −0.0295 | 0.3847 | 0.038* | |
| H10B | 0.3678 | 0.0229 | 0.3247 | 0.038* | |
| C11 | 0.57442 (17) | 0.00744 (14) | 0.36110 (9) | 0.0274 (4) | |
| H11 | 0.5665 | 0.0098 | 0.3182 | 0.033* | |
| C12 | 0.68702 (17) | −0.00597 (14) | 0.38544 (8) | 0.0261 (4) | |
| C13 | 0.70501 (18) | −0.01066 (14) | 0.45046 (9) | 0.0281 (4) | |
| C14 | 0.82265 (18) | −0.02299 (16) | 0.47050 (9) | 0.0353 (5) | |
| H14 | 0.8382 | −0.0277 | 0.5127 | 0.042* | |
| C15 | 0.91170 (18) | −0.02810 (16) | 0.43079 (9) | 0.0347 (5) | |
| H15 | 0.9885 | −0.0358 | 0.4453 | 0.042* | |
| C16 | 0.89073 (17) | −0.02195 (15) | 0.36768 (9) | 0.0293 (4) | |
| C17 | 0.78028 (17) | −0.01169 (14) | 0.34546 (9) | 0.0293 (5) | |
| H17 | 0.7675 | −0.0085 | 0.3029 | 0.035* |
| O1 | 0.0255 (8) | 0.0574 (10) | 0.0362 (9) | −0.0014 (7) | 0.0025 (7) | 0.0090 (7) |
| O2 | 0.0335 (9) | 0.0701 (12) | 0.0450 (10) | 0.0044 (8) | 0.0064 (8) | 0.0105 (8) |
| O3 | 0.0570 (11) | 0.0726 (12) | 0.0269 (9) | 0.0072 (8) | 0.0058 (8) | −0.0012 (7) |
| O4 | 0.0334 (8) | 0.0565 (10) | 0.0250 (8) | 0.0030 (7) | 0.0042 (7) | 0.0031 (6) |
| O5 | 0.0469 (11) | 0.1112 (16) | 0.0326 (10) | 0.0119 (10) | 0.0109 (8) | 0.0110 (9) |
| O6 | 0.0278 (9) | 0.0770 (13) | 0.0560 (11) | 0.0016 (8) | 0.0043 (8) | 0.0064 (9) |
| N1 | 0.0380 (11) | 0.0407 (11) | 0.0330 (11) | 0.0072 (8) | 0.0040 (9) | 0.0031 (8) |
| N2 | 0.0311 (10) | 0.0420 (11) | 0.0243 (10) | 0.0018 (8) | −0.0008 (8) | 0.0051 (7) |
| N3 | 0.0304 (10) | 0.0370 (10) | 0.0225 (10) | 0.0030 (7) | −0.0016 (8) | −0.0009 (7) |
| N4 | 0.0323 (11) | 0.0474 (12) | 0.0367 (11) | 0.0026 (8) | 0.0050 (9) | 0.0073 (8) |
| C1 | 0.0265 (11) | 0.0295 (11) | 0.0318 (11) | −0.0006 (8) | −0.0022 (9) | 0.0047 (8) |
| C2 | 0.0304 (11) | 0.0321 (12) | 0.0336 (12) | −0.0020 (9) | −0.0048 (9) | 0.0041 (9) |
| C3 | 0.0391 (13) | 0.0284 (11) | 0.0285 (11) | −0.0002 (9) | −0.0043 (9) | 0.0018 (8) |
| C4 | 0.0306 (12) | 0.0312 (11) | 0.0271 (11) | 0.0023 (9) | 0.0029 (9) | 0.0029 (8) |
| C5 | 0.0241 (10) | 0.0316 (12) | 0.0324 (12) | 0.0015 (8) | −0.0017 (9) | 0.0024 (8) |
| C6 | 0.0260 (10) | 0.0279 (11) | 0.0272 (11) | 0.0023 (8) | −0.0019 (9) | 0.0040 (8) |
| C7 | 0.0285 (11) | 0.0314 (11) | 0.0315 (11) | 0.0009 (9) | 0.0011 (9) | 0.0022 (8) |
| C8 | 0.0368 (12) | 0.0418 (13) | 0.0260 (12) | 0.0022 (10) | −0.0015 (9) | 0.0002 (9) |
| C9 | 0.0315 (12) | 0.0400 (13) | 0.0274 (11) | 0.0029 (9) | 0.0019 (9) | 0.0022 (9) |
| C10 | 0.0278 (11) | 0.0425 (13) | 0.0256 (11) | 0.0015 (9) | −0.0017 (9) | 0.0013 (9) |
| C11 | 0.0324 (11) | 0.0280 (11) | 0.0218 (10) | 0.0010 (8) | −0.0012 (9) | −0.0004 (8) |
| C12 | 0.0288 (11) | 0.0263 (11) | 0.0233 (10) | 0.0014 (8) | −0.0002 (8) | 0.0009 (7) |
| C13 | 0.0317 (11) | 0.0276 (11) | 0.0251 (11) | −0.0018 (8) | 0.0004 (9) | 0.0010 (8) |
| C14 | 0.0331 (12) | 0.0469 (13) | 0.0260 (11) | −0.0042 (10) | −0.0033 (9) | 0.0041 (9) |
| C15 | 0.0284 (11) | 0.0414 (13) | 0.0344 (13) | −0.0037 (10) | −0.0029 (9) | 0.0040 (9) |
| C16 | 0.0300 (11) | 0.0306 (11) | 0.0274 (11) | −0.0010 (8) | 0.0036 (9) | 0.0036 (8) |
| C17 | 0.0346 (12) | 0.0297 (11) | 0.0236 (10) | −0.0003 (9) | 0.0011 (9) | 0.0015 (8) |
| O1—C1 | 1.277 (2) | C5—H5 | 0.9500 |
| O2—N1 | 1.236 (2) | C6—C7 | 1.422 (3) |
| O3—N1 | 1.233 (2) | C7—H7 | 0.9500 |
| O4—C13 | 1.258 (2) | C8—C9 | 1.519 (3) |
| O5—N4 | 1.233 (2) | C8—H8A | 0.9900 |
| O6—N4 | 1.237 (2) | C8—H8B | 0.9900 |
| N1—C4 | 1.446 (3) | C9—C10 | 1.523 (3) |
| N2—C7 | 1.292 (2) | C9—H9A | 0.9900 |
| N2—C8 | 1.456 (3) | C9—H9B | 0.9900 |
| N2—H3N | 0.93 (3) | C10—H10A | 0.9900 |
| N3—C11 | 1.293 (3) | C10—H10B | 0.9900 |
| N3—C10 | 1.457 (3) | C11—C12 | 1.420 (3) |
| N3—H2N | 0.90 (3) | C11—H11 | 0.9500 |
| N4—C16 | 1.429 (3) | C12—C17 | 1.395 (3) |
| C1—C2 | 1.426 (3) | C12—C13 | 1.449 (3) |
| C1—C6 | 1.447 (3) | C13—C14 | 1.440 (3) |
| C2—C3 | 1.357 (3) | C14—C15 | 1.353 (3) |
| C2—H2 | 0.9500 | C14—H14 | 0.9500 |
| C3—C4 | 1.406 (3) | C15—C16 | 1.414 (3) |
| C3—H3 | 0.9500 | C15—H15 | 0.9500 |
| C4—C5 | 1.367 (3) | C16—C17 | 1.375 (3) |
| C5—C6 | 1.402 (3) | C17—H17 | 0.9500 |
| O3—N1—O2 | 122.92 (18) | N2—C8—H8B | 109.4 |
| O3—N1—C4 | 118.46 (18) | C9—C8—H8B | 109.4 |
| O2—N1—C4 | 118.62 (18) | H8A—C8—H8B | 108.0 |
| C7—N2—C8 | 125.25 (19) | C8—C9—C10 | 114.79 (17) |
| C7—N2—H3N | 110.9 (18) | C8—C9—H9A | 108.6 |
| C8—N2—H3N | 123.8 (18) | C10—C9—H9A | 108.6 |
| C11—N3—C10 | 124.97 (18) | C8—C9—H9B | 108.6 |
| C11—N3—H2N | 116.4 (16) | C10—C9—H9B | 108.6 |
| C10—N3—H2N | 118.5 (16) | H9A—C9—H9B | 107.5 |
| O5—N4—O6 | 121.87 (18) | N3—C10—C9 | 111.32 (17) |
| O5—N4—C16 | 118.95 (18) | N3—C10—H10A | 109.4 |
| O6—N4—C16 | 119.19 (19) | C9—C10—H10A | 109.4 |
| O1—C1—C2 | 121.84 (18) | N3—C10—H10B | 109.4 |
| O1—C1—C6 | 121.70 (18) | C9—C10—H10B | 109.4 |
| C2—C1—C6 | 116.44 (18) | H10A—C10—H10B | 108.0 |
| C3—C2—C1 | 122.04 (19) | N3—C11—C12 | 124.13 (18) |
| C3—C2—H2 | 119.0 | N3—C11—H11 | 117.9 |
| C1—C2—H2 | 119.0 | C12—C11—H11 | 117.9 |
| C2—C3—C4 | 120.12 (19) | C17—C12—C11 | 118.54 (17) |
| C2—C3—H3 | 119.9 | C17—C12—C13 | 120.74 (18) |
| C4—C3—H3 | 119.9 | C11—C12—C13 | 120.70 (17) |
| C5—C4—C3 | 120.94 (19) | O4—C13—C14 | 121.84 (18) |
| C5—C4—N1 | 119.89 (19) | O4—C13—C12 | 121.81 (18) |
| C3—C4—N1 | 119.17 (18) | C14—C13—C12 | 116.34 (18) |
| C4—C5—C6 | 120.15 (18) | C15—C14—C13 | 121.78 (19) |
| C4—C5—H5 | 119.9 | C15—C14—H14 | 119.1 |
| C6—C5—H5 | 119.9 | C13—C14—H14 | 119.1 |
| C5—C6—C7 | 119.23 (18) | C14—C15—C16 | 120.17 (19) |
| C5—C6—C1 | 120.30 (18) | C14—C15—H15 | 119.9 |
| C7—C6—C1 | 120.47 (18) | C16—C15—H15 | 119.9 |
| N2—C7—C6 | 121.97 (19) | C17—C16—C15 | 121.02 (18) |
| N2—C7—H7 | 119.0 | C17—C16—N4 | 119.63 (18) |
| C6—C7—H7 | 119.0 | C15—C16—N4 | 119.33 (18) |
| N2—C8—C9 | 111.38 (17) | C16—C17—C12 | 119.93 (18) |
| N2—C8—H8A | 109.4 | C16—C17—H17 | 120.0 |
| C9—C8—H8A | 109.4 | C12—C17—H17 | 120.0 |
| O1—C1—C2—C3 | −178.08 (18) | C11—N3—C10—C9 | −118.0 (2) |
| C6—C1—C2—C3 | 0.2 (3) | C8—C9—C10—N3 | 69.0 (2) |
| C1—C2—C3—C4 | −1.1 (3) | C10—N3—C11—C12 | −178.09 (18) |
| C2—C3—C4—C5 | 0.9 (3) | N3—C11—C12—C17 | −178.00 (18) |
| C2—C3—C4—N1 | −179.06 (17) | N3—C11—C12—C13 | 0.3 (3) |
| O3—N1—C4—C5 | 174.81 (18) | C17—C12—C13—O4 | 179.94 (17) |
| O2—N1—C4—C5 | −5.2 (3) | C11—C12—C13—O4 | 1.7 (3) |
| O3—N1—C4—C3 | −5.2 (3) | C17—C12—C13—C14 | −0.9 (3) |
| O2—N1—C4—C3 | 174.75 (18) | C11—C12—C13—C14 | −179.17 (17) |
| C3—C4—C5—C6 | 0.2 (3) | O4—C13—C14—C15 | −179.76 (19) |
| N1—C4—C5—C6 | −179.88 (17) | C12—C13—C14—C15 | 1.1 (3) |
| C4—C5—C6—C7 | 177.95 (18) | C13—C14—C15—C16 | −0.4 (3) |
| C4—C5—C6—C1 | −1.0 (3) | C14—C15—C16—C17 | −0.6 (3) |
| O1—C1—C6—C5 | 179.14 (18) | C14—C15—C16—N4 | 178.00 (18) |
| C2—C1—C6—C5 | 0.8 (3) | O5—N4—C16—C17 | −4.5 (3) |
| O1—C1—C6—C7 | 0.2 (3) | O6—N4—C16—C17 | 175.25 (19) |
| C2—C1—C6—C7 | −178.14 (17) | O5—N4—C16—C15 | 176.89 (18) |
| C8—N2—C7—C6 | 179.92 (17) | O6—N4—C16—C15 | −3.4 (3) |
| C5—C6—C7—N2 | −179.22 (18) | C15—C16—C17—C12 | 0.8 (3) |
| C1—C6—C7—N2 | −0.2 (3) | N4—C16—C17—C12 | −177.83 (17) |
| C7—N2—C8—C9 | −128.3 (2) | C11—C12—C17—C16 | 178.29 (17) |
| N2—C8—C9—C10 | 69.6 (2) | C13—C12—C17—C16 | 0.0 (3) |
| H··· | ||||
| N2—H3 | 0.93 (3) | 1.77 (3) | 2.583 (2) | 145 (3) |
| N3—H2 | 0.90 (3) | 1.93 (3) | 2.642 (2) | 135 (2) |
| N3—H2 | 0.90 (3) | 2.17 (3) | 2.891 (2) | 136 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H3 | 0.93 (3) | 1.77 (3) | 2.583 (2) | 145 (3) |
| N3—H2 | 0.90 (3) | 1.93 (3) | 2.642 (2) | 135 (2) |
| N3—H2 | 0.90 (3) | 2.17 (3) | 2.891 (2) | 136 (2) |
Symmetry code: (i) .