Literature DB >> 22590269

Methyl 2-({6-[(1-meth-oxy-2-methyl-1-oxopropan-2-yl)carbamo-yl]pyridin-2-yl}formamido)-2-methyl-propano-ate.

Mohamed A Al-Omar, Abdel-Galil E Amr, Hazem A Ghabbour, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title compound, C(17)H(23)N(3)O(6), the two meth-oxy-carbonyl C-O-C=O planes are inclined at dihedral angles of 5.3 (4) and 83.9 (4)° with respect to the central pyridine ring. An intra-molecular N-H⋯O hydrogen bond generates an S(5) ring motif. In the crystal, mol-ecules are linked into a chain along the c axis via C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590269      PMCID: PMC3344507          DOI: 10.1107/S1600536812014651

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the pharmacological activity of the title compound, see: Abou-Ghalia & Amr (2004 ▶); Abou-Ghalia et al. (2003 ▶); Al-Omar & Amr (2010 ▶); Amr (2000 ▶); Attia et al. (1997 ▶, 2000 ▶); Amr et al. (2009 ▶); Fakhr et al. (2008 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H23N3O6 M = 365.38 Orthorhombic, a = 10.2307 (10) Å b = 9.3038 (11) Å c = 20.652 (2) Å V = 1965.8 (4) Å3 Z = 4 Cu Kα radiation μ = 0.79 mm−1 T = 296 K 0.63 × 0.52 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.560, T max = 0.932 7477 measured reflections 1898 independent reflections 1249 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.133 S = 0.91 1898 reflections 250 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812014651/is5109sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812014651/is5109Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812014651/is5109Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H23N3O6F(000) = 776
Mr = 365.38Dx = 1.235 Mg m3
Orthorhombic, Pca21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2c -2acCell parameters from 874 reflections
a = 10.2307 (10) Åθ = 4.8–49.5°
b = 9.3038 (11) ŵ = 0.79 mm1
c = 20.652 (2) ÅT = 296 K
V = 1965.8 (4) Å3Plate, colourless
Z = 40.63 × 0.52 × 0.09 mm
Bruker SMART APEXII CCD area-detector diffractometer1898 independent reflections
Radiation source: fine-focus sealed tube1249 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
φ and ω scansθmax = 70.3°, θmin = 6.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→10
Tmin = 0.560, Tmax = 0.932k = −10→11
7477 measured reflectionsl = −24→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.133w = 1/[σ2(Fo2) + (0.0914P)2] where P = (Fo2 + 2Fc2)/3
S = 0.91(Δ/σ)max = 0.001
1898 reflectionsΔρmax = 0.19 e Å3
250 parametersΔρmin = −0.17 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0102 (11)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6692 (3)0.7355 (4)0.72873 (15)0.1024 (10)
O20.8492 (3)0.6849 (5)0.51295 (18)0.1213 (13)
O31.0304 (3)0.5979 (4)0.55776 (19)0.1156 (12)
O40.2658 (2)0.9156 (4)0.46691 (14)0.1017 (11)
O50.3806 (4)0.6611 (7)0.3829 (2)0.1392 (17)
O60.3250 (4)0.8241 (7)0.3084 (2)0.170 (2)
N10.5055 (3)0.8326 (3)0.58446 (14)0.0676 (8)
N20.7327 (3)0.7306 (4)0.62369 (18)0.0745 (8)
H1N20.715 (4)0.744 (4)0.584 (2)0.068 (12)*
N30.4811 (3)0.8725 (5)0.45674 (16)0.0830 (10)
H1N30.554 (5)0.851 (5)0.484 (3)0.102 (14)*
C10.5188 (3)0.8156 (4)0.64814 (17)0.0665 (9)
C20.4185 (4)0.8403 (4)0.69200 (19)0.0740 (10)
H2A0.43150.82630.73610.089*
C30.2992 (4)0.8860 (5)0.66876 (19)0.0774 (10)
H3A0.23080.90550.69710.093*
C40.2830 (3)0.9021 (5)0.60377 (18)0.0737 (10)
H4A0.20270.93060.58700.088*
C50.3875 (3)0.8757 (4)0.5630 (2)0.0684 (9)
C60.6502 (3)0.7562 (5)0.67077 (17)0.0720 (9)
C70.8613 (3)0.6622 (4)0.6287 (2)0.0741 (9)
C80.9097 (4)0.6522 (5)0.5605 (2)0.0862 (11)
C91.0870 (6)0.5824 (10)0.4936 (3)0.147 (3)
H9A1.15910.51650.49540.220*
H9B1.11730.67420.47860.220*
H9C1.02190.54620.46430.220*
C100.9549 (4)0.7569 (6)0.6675 (3)0.1005 (15)
H10A0.96580.84740.64580.151*
H10B1.03810.70990.67120.151*
H10C0.91960.77310.71000.151*
C110.8503 (6)0.5137 (6)0.6576 (3)0.1151 (17)
H11A0.79370.45590.63130.173*
H11B0.81490.52050.70060.173*
H11C0.93530.47030.65950.173*
C120.3733 (3)0.8903 (5)0.49148 (19)0.0774 (11)
C130.4893 (4)0.8851 (7)0.3870 (2)0.0988 (17)
C140.3863 (4)0.7913 (10)0.3552 (2)0.121 (2)
C150.2980 (11)0.5560 (12)0.3517 (4)0.212 (5)
H15A0.31260.46330.37090.317*
H15B0.31850.55200.30640.317*
H15C0.20800.58270.35710.317*
C160.6234 (4)0.8267 (9)0.3661 (3)0.135 (3)
H16A0.63360.73010.38160.203*
H16B0.69120.88620.38380.203*
H16C0.62910.82730.31970.203*
C170.4747 (6)1.0409 (9)0.3669 (3)0.143 (3)
H17A0.40221.08300.38960.215*
H17B0.45941.04610.32110.215*
H17C0.55331.09240.37740.215*
U11U22U33U12U13U23
O10.101 (2)0.140 (3)0.0657 (19)0.0175 (18)−0.0122 (14)0.0065 (18)
O20.096 (2)0.188 (4)0.080 (2)0.027 (2)0.0005 (17)0.002 (2)
O30.0874 (19)0.157 (3)0.102 (3)0.0322 (18)0.0008 (16)−0.005 (2)
O40.0631 (13)0.167 (3)0.0754 (17)0.0001 (15)−0.0090 (13)0.0276 (19)
O50.133 (3)0.200 (5)0.085 (3)−0.049 (3)−0.009 (2)−0.016 (3)
O60.114 (3)0.318 (7)0.078 (2)−0.045 (4)−0.038 (2)0.024 (3)
N10.0623 (15)0.085 (2)0.0558 (18)−0.0025 (14)−0.0017 (11)−0.0001 (14)
N20.0652 (15)0.096 (2)0.0620 (19)0.0030 (14)−0.0075 (14)0.0038 (18)
N30.0638 (16)0.130 (3)0.0552 (18)0.0040 (16)−0.0019 (13)0.0054 (17)
C10.0708 (19)0.074 (2)0.054 (2)−0.0044 (15)−0.0051 (14)0.0036 (17)
C20.085 (2)0.080 (2)0.057 (2)−0.0078 (18)0.0009 (17)−0.005 (2)
C30.071 (2)0.090 (3)0.071 (3)−0.0034 (19)0.0125 (17)−0.008 (2)
C40.0646 (19)0.088 (3)0.068 (2)−0.0023 (17)0.0045 (15)−0.0001 (19)
C50.0603 (17)0.081 (2)0.064 (2)−0.0025 (15)−0.0025 (15)−0.0004 (18)
C60.075 (2)0.087 (3)0.054 (2)−0.0019 (18)−0.0104 (16)0.0023 (18)
C70.0707 (19)0.079 (2)0.072 (2)0.0061 (17)−0.0080 (17)0.001 (2)
C80.072 (2)0.101 (3)0.086 (3)0.0066 (19)−0.005 (2)−0.004 (3)
C90.104 (4)0.217 (8)0.118 (4)0.037 (4)0.019 (3)−0.021 (5)
C100.078 (2)0.123 (4)0.100 (3)0.012 (2)−0.020 (2)−0.019 (3)
C110.125 (4)0.100 (4)0.121 (4)0.025 (3)0.010 (3)0.021 (3)
C120.0661 (19)0.105 (3)0.061 (2)−0.0039 (18)−0.0013 (16)0.008 (2)
C130.066 (2)0.174 (5)0.056 (2)−0.004 (2)−0.0016 (15)0.014 (3)
C140.086 (3)0.222 (7)0.056 (3)−0.027 (3)−0.004 (2)0.012 (4)
C150.227 (10)0.274 (12)0.134 (6)−0.117 (9)−0.011 (6)−0.065 (7)
C160.076 (3)0.249 (8)0.081 (3)−0.005 (3)0.010 (2)−0.032 (4)
C170.111 (4)0.213 (8)0.106 (4)−0.015 (4)0.003 (3)0.066 (5)
O1—C61.228 (5)C7—C81.497 (6)
O2—C81.200 (6)C7—C111.509 (7)
O3—C81.335 (5)C7—C101.528 (6)
O3—C91.454 (7)C9—H9A0.9600
O4—C121.234 (4)C9—H9B0.9600
O5—C141.341 (9)C9—H9C0.9600
O5—C151.444 (8)C10—H10A0.9600
O6—C141.191 (6)C10—H10B0.9600
N1—C11.332 (5)C10—H10C0.9600
N1—C51.347 (4)C11—H11A0.9600
N2—C61.309 (5)C11—H11B0.9600
N2—C71.466 (5)C11—H11C0.9600
N2—H1N20.84 (4)C13—C171.516 (9)
N3—C121.326 (5)C13—C141.518 (8)
N3—C131.447 (6)C13—C161.538 (7)
N3—H1N30.95 (5)C15—H15A0.9600
C1—C21.387 (5)C15—H15B0.9600
C1—C61.527 (5)C15—H15C0.9600
C2—C31.379 (6)C16—H16A0.9600
C2—H2A0.9300C16—H16B0.9600
C3—C41.361 (6)C16—H16C0.9600
C3—H3A0.9300C17—H17A0.9600
C4—C51.382 (5)C17—H17B0.9600
C4—H4A0.9300C17—H17C0.9600
C5—C121.491 (6)
C8—O3—C9116.4 (4)C7—C10—H10A109.5
C14—O5—C15116.6 (7)C7—C10—H10B109.5
C1—N1—C5116.8 (3)H10A—C10—H10B109.5
C6—N2—C7127.2 (4)C7—C10—H10C109.5
C6—N2—H1N2123 (3)H10A—C10—H10C109.5
C7—N2—H1N2109 (3)H10B—C10—H10C109.5
C12—N3—C13125.2 (3)C7—C11—H11A109.5
C12—N3—H1N3111 (3)C7—C11—H11B109.5
C13—N3—H1N3123 (3)H11A—C11—H11B109.5
N1—C1—C2123.4 (3)C7—C11—H11C109.5
N1—C1—C6115.8 (3)H11A—C11—H11C109.5
C2—C1—C6120.7 (3)H11B—C11—H11C109.5
C3—C2—C1118.6 (4)O4—C12—N3122.9 (4)
C3—C2—H2A120.7O4—C12—C5120.8 (3)
C1—C2—H2A120.7N3—C12—C5116.3 (3)
C4—C3—C2119.0 (4)N3—C13—C17110.1 (5)
C4—C3—H3A120.5N3—C13—C14110.1 (4)
C2—C3—H3A120.5C17—C13—C14111.3 (5)
C3—C4—C5119.1 (4)N3—C13—C16107.6 (4)
C3—C4—H4A120.4C17—C13—C16110.4 (5)
C5—C4—H4A120.4C14—C13—C16107.2 (5)
N1—C5—C4123.1 (4)O6—C14—O5123.7 (7)
N1—C5—C12116.1 (3)O6—C14—C13124.6 (8)
C4—C5—C12120.8 (3)O5—C14—C13111.4 (4)
O1—C6—N2126.4 (4)O5—C15—H15A109.5
O1—C6—C1119.7 (4)O5—C15—H15B109.5
N2—C6—C1114.0 (3)H15A—C15—H15B109.5
N2—C7—C8104.9 (3)O5—C15—H15C109.5
N2—C7—C11111.0 (4)H15A—C15—H15C109.5
C8—C7—C11109.9 (4)H15B—C15—H15C109.5
N2—C7—C10110.5 (3)C13—C16—H16A109.5
C8—C7—C10108.8 (4)C13—C16—H16B109.5
C11—C7—C10111.6 (4)H16A—C16—H16B109.5
O2—C8—O3122.6 (4)C13—C16—H16C109.5
O2—C8—C7125.8 (4)H16A—C16—H16C109.5
O3—C8—C7111.7 (4)H16B—C16—H16C109.5
O3—C9—H9A109.5C13—C17—H17A109.5
O3—C9—H9B109.5C13—C17—H17B109.5
H9A—C9—H9B109.5H17A—C17—H17B109.5
O3—C9—H9C109.5C13—C17—H17C109.5
H9A—C9—H9C109.5H17A—C17—H17C109.5
H9B—C9—H9C109.5H17B—C17—H17C109.5
C5—N1—C1—C2−0.2 (5)C11—C7—C8—O2114.7 (6)
C5—N1—C1—C6175.6 (4)C10—C7—C8—O2−122.9 (5)
N1—C1—C2—C3−0.6 (6)N2—C7—C8—O3176.8 (4)
C6—C1—C2—C3−176.2 (4)C11—C7—C8—O3−63.8 (5)
C1—C2—C3—C41.5 (6)C10—C7—C8—O358.6 (5)
C2—C3—C4—C5−1.6 (7)C13—N3—C12—O42.3 (8)
C1—N1—C5—C40.1 (6)C13—N3—C12—C5−178.6 (4)
C1—N1—C5—C12−178.4 (4)N1—C5—C12—O4173.0 (4)
C3—C4—C5—N10.8 (7)C4—C5—C12—O4−5.5 (7)
C3—C4—C5—C12179.2 (4)N1—C5—C12—N3−6.1 (6)
C7—N2—C6—O14.9 (7)C4—C5—C12—N3175.4 (4)
C7—N2—C6—C1−174.3 (3)C12—N3—C13—C1770.9 (6)
N1—C1—C6—O1−178.9 (4)C12—N3—C13—C14−52.2 (7)
C2—C1—C6—O1−3.0 (6)C12—N3—C13—C16−168.7 (5)
N1—C1—C6—N20.3 (5)C15—O5—C14—O62.2 (10)
C2—C1—C6—N2176.3 (4)C15—O5—C14—C13−172.4 (6)
C6—N2—C7—C8176.8 (4)N3—C13—C14—O6141.2 (6)
C6—N2—C7—C1158.1 (6)C17—C13—C14—O618.8 (8)
C6—N2—C7—C10−66.1 (5)C16—C13—C14—O6−102.1 (8)
C9—O3—C8—O21.1 (8)N3—C13—C14—O5−44.3 (6)
C9—O3—C8—C7179.6 (5)C17—C13—C14—O5−166.7 (5)
N2—C7—C8—O2−4.7 (6)C16—C13—C14—O572.4 (6)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O20.85 (4)2.08 (4)2.614 (5)120 (3)
C3—H3A···O6i0.932.493.204 (6)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O20.85 (4)2.08 (4)2.614 (5)120 (3)
C3—H3A⋯O6i0.932.493.204 (6)134

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antiarrhythmic and anticoagulant activities of novel thiazolo derivatives from methyl 2-(thiazol-2-ylcarbamoyl)acetate.

Authors:  Abd El-Galil E Amr; Nermien M Sabrry; Mohamed M Abdalla; Bakr F Abdel-Wahab
Journal:  Eur J Med Chem       Date:  2008-05-15       Impact factor: 6.514

3.  Anti-inflammatory and analgesic activities of newly synthesized chiral peptide derivatives using (3-benzoyl- 4,5-dioxo-2-phenyl-pyrrolidin-1-yl)acetic acid ethyl ester as starting material.

Authors:  Issa M Fakhr; Abdel-Galil E Amr; Nermien M Sabry; Mohamed M Abdalah
Journal:  Arch Pharm (Weinheim)       Date:  2008-03       Impact factor: 3.751

4.  Synthesis and investigation of a new cyclo (Nalpha-dipicolinoyl) pentapeptide of a breast and CNS cytotoxic activity and an ionophoric specificity.

Authors:  M Abo-Ghalia; A Amr
Journal:  Amino Acids       Date:  2003-10-17       Impact factor: 3.520

5.  Synthesis of some new pyridine-2,6-carboxamide-derived Schiff bases as potential antimicrobial agents.

Authors:  Mohamed A Al-Omar; Abd El-Galil E Amr
Journal:  Molecules       Date:  2010-07-06       Impact factor: 4.411

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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