Literature DB >> 22590226

Diethyl 4-meth-oxyoxalyl-3,5-diphenyl-pyrrolidine-2,2-dicarboxyl-ate.

Yan-Qin He1, Jin-Quan Chen.   

Abstract

In the title compound, C(25)H(27)NO(7), the pyrrolidine ring exhibits an envelope conformation and the benzene rings form a dihedral angle of 33.47 (11)°. In the crystal, pairs of N-H⋯O hydrogen bonds link the mol-ecules into centrosymmetric dimers. Weak C-H⋯O inter-actions link the dimers into layers parallel to the bc plane.

Entities:  

Year:  2012        PMID: 22590226      PMCID: PMC3344464          DOI: 10.1107/S160053681201392X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pyrrolidine derivatives, see: Shih et al. (1995 ▶); Enyedy et al. (2001 ▶); Kravchenko et al. (2005 ▶); Lack et al. (2011 ▶).

Experimental

Crystal data

C25H27NO7 M = 453.48 Monoclinic, a = 8.8779 (3) Å b = 20.3438 (6) Å c = 13.5740 (5) Å β = 102.213 (3)° V = 2396.12 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 290 K 0.38 × 0.35 × 0.30 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.966, T max = 0.973 14990 measured reflections 4887 independent reflections 3129 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.133 S = 1.02 4887 reflections 305 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201392X/cv5272sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201392X/cv5272Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201392X/cv5272Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H27NO7F(000) = 960
Mr = 453.48Dx = 1.257 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4380 reflections
a = 8.8779 (3) Åθ = 3.2–29.1°
b = 20.3438 (6) ŵ = 0.09 mm1
c = 13.5740 (5) ÅT = 290 K
β = 102.213 (3)°Block, colorless
V = 2396.12 (14) Å30.38 × 0.35 × 0.30 mm
Z = 4
Oxford Diffraction Gemini S Ultra diffractometer4887 independent reflections
Radiation source: Enhance (Mo) X-ray Source3129 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
Detector resolution: 15.9149 pixels mm-1θmax = 26.4°, θmin = 3.2°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −25→25
Tmin = 0.966, Tmax = 0.973l = −16→14
14990 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0554P)2 + 0.3662P] where P = (Fo2 + 2Fc2)/3
4887 reflections(Δ/σ)max < 0.001
305 parametersΔρmax = 0.28 e Å3
8 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.9482 (2)0.04749 (8)0.86894 (15)0.0445 (4)
O10.75874 (18)0.01366 (7)1.00477 (12)0.0587 (4)
O20.68505 (17)0.11814 (7)1.01209 (11)0.0537 (4)
O30.90888 (18)0.20277 (8)0.85551 (13)0.0627 (5)
O40.99367 (18)0.16006 (7)1.00924 (12)0.0606 (5)
O50.6663 (2)0.05129 (8)0.58463 (13)0.0646 (5)
O60.5961 (2)−0.10174 (9)0.66768 (15)0.0833 (6)
O70.6680 (2)−0.07505 (8)0.52526 (13)0.0672 (5)
C20.8329 (2)0.09267 (9)0.89093 (15)0.0390 (5)
C30.7135 (2)0.09231 (9)0.78941 (15)0.0393 (5)
H30.75900.11680.74080.047*
C40.7112 (2)0.01965 (9)0.75916 (16)0.0416 (5)
H40.6324−0.00270.78770.050*
C50.8726 (2)−0.00897 (10)0.81100 (16)0.0427 (5)
H50.8575−0.04360.85820.051*
C60.7574 (2)0.06980 (10)0.97687 (16)0.0418 (5)
C70.5949 (3)0.10022 (14)1.0861 (2)0.0740 (8)
H7A0.52540.06441.06080.089*
H7B0.66250.08621.14830.089*
C80.5078 (5)0.15783 (19)1.1041 (3)0.1267 (13)
H8A0.45100.17461.04090.190*
H8B0.57730.19101.13720.190*
H8C0.43740.14601.14600.190*
C90.9123 (2)0.15908 (11)0.91495 (18)0.0453 (5)
C101.0665 (3)0.22220 (14)1.0448 (2)0.0809 (9)
H10A1.10180.24390.99020.097*
H10B1.15550.21401.09860.097*
C110.9557 (4)0.26554 (15)1.0823 (3)0.1000 (11)
H11A0.86840.27411.02870.150*
H11B1.00530.30631.10560.150*
H11C0.92190.24421.13690.150*
C120.5595 (2)0.12441 (10)0.79130 (15)0.0412 (5)
C130.4339 (2)0.09043 (12)0.81017 (19)0.0570 (6)
H130.43960.04500.81800.068*
C140.3000 (3)0.12289 (14)0.8176 (2)0.0704 (7)
H140.21690.09910.83070.084*
C150.2887 (3)0.18935 (14)0.8060 (2)0.0683 (7)
H150.19880.21100.81180.082*
C160.4104 (3)0.22371 (13)0.7859 (2)0.0671 (7)
H160.40330.26910.77760.080*
C170.5440 (3)0.19164 (10)0.77789 (18)0.0545 (6)
H170.62550.21570.76310.065*
C180.6739 (2)0.00889 (10)0.64679 (17)0.0459 (5)
C190.6410 (3)−0.06290 (12)0.61527 (19)0.0533 (6)
C200.6394 (4)−0.14192 (14)0.4894 (2)0.0933 (10)
H20A0.6611−0.14570.42320.140*
H20B0.5335−0.15300.48660.140*
H20C0.7048−0.17140.53450.140*
C210.9705 (2)−0.03601 (10)0.74167 (17)0.0466 (5)
C220.9944 (3)−0.10277 (12)0.7365 (2)0.0651 (7)
H220.9494−0.13110.77570.078*
C231.0847 (4)−0.12831 (15)0.6737 (2)0.0820 (9)
H231.0998−0.17340.67090.098*
C241.1512 (4)−0.08695 (18)0.6163 (2)0.0861 (9)
H241.2127−0.10400.57480.103*
C251.1283 (3)−0.02117 (16)0.6190 (2)0.0783 (8)
H251.17300.00670.57900.094*
C261.0380 (3)0.00470 (12)0.68185 (19)0.0611 (6)
H261.02280.04990.68360.073*
H1N1.016 (2)0.0357 (10)0.9232 (14)0.054 (7)*
U11U22U33U12U13U23
N10.0426 (10)0.0438 (10)0.0464 (12)0.0056 (8)0.0077 (9)−0.0022 (9)
O10.0719 (11)0.0459 (9)0.0627 (11)0.0056 (7)0.0240 (8)0.0149 (8)
O20.0648 (10)0.0496 (9)0.0533 (10)0.0054 (7)0.0277 (8)0.0016 (7)
O30.0745 (11)0.0482 (9)0.0640 (11)−0.0176 (8)0.0113 (9)0.0053 (9)
O40.0645 (10)0.0603 (10)0.0520 (10)−0.0165 (8)0.0009 (8)−0.0057 (8)
O50.0861 (12)0.0569 (10)0.0495 (10)0.0043 (8)0.0110 (9)0.0064 (8)
O60.1233 (17)0.0567 (11)0.0763 (14)−0.0250 (10)0.0357 (12)−0.0118 (10)
O70.0863 (12)0.0633 (11)0.0497 (11)0.0081 (9)0.0093 (9)−0.0136 (9)
C20.0406 (11)0.0356 (10)0.0417 (12)−0.0003 (8)0.0104 (9)0.0006 (9)
C30.0429 (11)0.0374 (11)0.0384 (12)−0.0001 (8)0.0106 (9)0.0025 (9)
C40.0456 (12)0.0371 (11)0.0438 (13)−0.0015 (8)0.0131 (9)0.0003 (9)
C50.0505 (12)0.0372 (11)0.0418 (12)0.0025 (9)0.0131 (10)0.0036 (9)
C60.0425 (11)0.0418 (12)0.0402 (12)0.0015 (9)0.0066 (9)0.0012 (10)
C70.0804 (18)0.0894 (19)0.0637 (18)0.0056 (14)0.0409 (15)0.0081 (15)
C80.142 (2)0.132 (2)0.129 (2)0.0343 (16)0.0808 (17)−0.0039 (16)
C90.0423 (12)0.0439 (12)0.0519 (15)−0.0020 (9)0.0152 (10)−0.0022 (11)
C100.087 (2)0.0787 (19)0.072 (2)−0.0357 (16)0.0045 (16)−0.0169 (16)
C110.141 (3)0.072 (2)0.085 (2)−0.012 (2)0.019 (2)−0.0180 (18)
C120.0449 (12)0.0424 (11)0.0368 (12)0.0007 (9)0.0094 (9)0.0013 (9)
C130.0479 (13)0.0519 (13)0.0731 (18)−0.0032 (10)0.0171 (12)−0.0031 (12)
C140.0472 (14)0.0823 (19)0.085 (2)−0.0060 (13)0.0218 (13)−0.0096 (16)
C150.0543 (15)0.085 (2)0.0671 (18)0.0218 (13)0.0154 (13)−0.0022 (15)
C160.0718 (17)0.0548 (15)0.0766 (19)0.0199 (13)0.0201 (14)0.0073 (13)
C170.0546 (14)0.0469 (13)0.0642 (16)0.0049 (10)0.0171 (12)0.0077 (11)
C180.0439 (12)0.0464 (12)0.0471 (13)0.0020 (9)0.0087 (10)−0.0010 (11)
C190.0553 (14)0.0530 (14)0.0491 (15)0.0012 (11)0.0056 (11)−0.0052 (12)
C200.131 (3)0.0688 (18)0.072 (2)0.0200 (17)0.0035 (19)−0.0275 (16)
C210.0476 (12)0.0470 (13)0.0442 (13)0.0067 (9)0.0072 (10)−0.0009 (10)
C220.0812 (18)0.0505 (14)0.0649 (17)0.0158 (12)0.0183 (14)−0.0015 (12)
C230.102 (2)0.0648 (18)0.080 (2)0.0265 (16)0.0218 (18)−0.0160 (16)
C240.083 (2)0.103 (2)0.077 (2)0.0192 (18)0.0290 (17)−0.025 (2)
C250.0768 (19)0.100 (2)0.0669 (19)−0.0079 (16)0.0358 (15)−0.0105 (17)
C260.0670 (16)0.0576 (15)0.0631 (17)−0.0018 (12)0.0236 (13)−0.0036 (13)
N1—C21.453 (2)C10—H10A0.9700
N1—C51.472 (3)C10—H10B0.9700
N1—H1N0.878 (16)C11—H11A0.9600
O1—C61.203 (2)C11—H11B0.9600
O2—C61.318 (2)C11—H11C0.9600
O2—C71.457 (3)C12—C131.381 (3)
O3—C91.196 (3)C12—C171.383 (3)
O4—C91.330 (3)C13—C141.382 (3)
O4—C101.455 (3)C13—H130.9300
O5—C181.198 (3)C14—C151.362 (4)
O6—C191.187 (3)C14—H140.9300
O7—C191.317 (3)C15—C161.362 (4)
O7—C201.449 (3)C15—H150.9300
C2—C91.527 (3)C16—C171.378 (3)
C2—C61.536 (3)C16—H160.9300
C2—C31.551 (3)C17—H170.9300
C3—C121.520 (3)C18—C191.533 (3)
C3—C41.533 (3)C20—H20A0.9600
C3—H30.9800C20—H20B0.9600
C4—C181.507 (3)C20—H20C0.9600
C4—C51.569 (3)C21—C221.379 (3)
C4—H40.9800C21—C261.382 (3)
C5—C211.513 (3)C22—C231.388 (4)
C5—H50.9800C22—H220.9300
C7—C81.453 (4)C23—C241.364 (4)
C7—H7A0.9700C23—H230.9300
C7—H7B0.9700C24—C251.355 (4)
C8—H8A0.9600C24—H240.9300
C8—H8B0.9600C25—C261.392 (4)
C8—H8C0.9600C25—H250.9300
C10—C111.489 (4)C26—H260.9300
C2—N1—C5110.00 (16)C10—C11—H11A109.5
C2—N1—H1N112.7 (15)C10—C11—H11B109.5
C5—N1—H1N112.8 (14)H11A—C11—H11B109.5
C6—O2—C7116.37 (18)C10—C11—H11C109.5
C9—O4—C10116.42 (19)H11A—C11—H11C109.5
C19—O7—C20115.8 (2)H11B—C11—H11C109.5
N1—C2—C9106.88 (16)C13—C12—C17117.3 (2)
N1—C2—C6113.85 (16)C13—C12—C3123.52 (18)
C9—C2—C6111.21 (17)C17—C12—C3119.14 (18)
N1—C2—C3101.17 (16)C12—C13—C14121.0 (2)
C9—C2—C3113.06 (16)C12—C13—H13119.5
C6—C2—C3110.31 (15)C14—C13—H13119.5
C12—C3—C4117.24 (16)C15—C14—C13120.6 (2)
C12—C3—C2115.56 (17)C15—C14—H14119.7
C4—C3—C2102.13 (15)C13—C14—H14119.7
C12—C3—H3107.1C16—C15—C14119.4 (2)
C4—C3—H3107.1C16—C15—H15120.3
C2—C3—H3107.1C14—C15—H15120.3
C18—C4—C3113.50 (17)C15—C16—C17120.4 (2)
C18—C4—C5112.60 (17)C15—C16—H16119.8
C3—C4—C5106.19 (15)C17—C16—H16119.8
C18—C4—H4108.1C16—C17—C12121.4 (2)
C3—C4—H4108.1C16—C17—H17119.3
C5—C4—H4108.1C12—C17—H17119.3
N1—C5—C21111.04 (17)O5—C18—C4125.16 (19)
N1—C5—C4102.72 (15)O5—C18—C19120.7 (2)
C21—C5—C4116.51 (17)C4—C18—C19114.14 (19)
N1—C5—H5108.8O6—C19—O7125.5 (2)
C21—C5—H5108.8O6—C19—C18122.4 (2)
C4—C5—H5108.8O7—C19—C18112.1 (2)
O1—C6—O2124.6 (2)O7—C20—H20A109.5
O1—C6—C2123.36 (19)O7—C20—H20B109.5
O2—C6—C2111.96 (17)H20A—C20—H20B109.5
C8—C7—O2107.7 (2)O7—C20—H20C109.5
C8—C7—H7A110.2H20A—C20—H20C109.5
O2—C7—H7A110.2H20B—C20—H20C109.5
C8—C7—H7B110.2C22—C21—C26118.0 (2)
O2—C7—H7B110.2C22—C21—C5120.3 (2)
H7A—C7—H7B108.5C26—C21—C5121.66 (19)
C7—C8—H8A109.5C21—C22—C23121.0 (3)
C7—C8—H8B109.5C21—C22—H22119.5
H8A—C8—H8B109.5C23—C22—H22119.5
C7—C8—H8C109.5C24—C23—C22119.7 (3)
H8A—C8—H8C109.5C24—C23—H23120.1
H8B—C8—H8C109.5C22—C23—H23120.1
O3—C9—O4124.67 (19)C25—C24—C23120.5 (3)
O3—C9—C2124.7 (2)C25—C24—H24119.7
O4—C9—C2110.54 (18)C23—C24—H24119.7
O4—C10—C11110.4 (2)C24—C25—C26120.0 (3)
O4—C10—H10A109.6C24—C25—H25120.0
C11—C10—H10A109.6C26—C25—H25120.0
O4—C10—H10B109.6C21—C26—C25120.7 (2)
C11—C10—H10B109.6C21—C26—H26119.6
H10A—C10—H10B108.1C25—C26—H26119.6
C5—N1—C2—C9−159.71 (17)C9—O4—C10—C1184.5 (3)
C5—N1—C2—C677.1 (2)C4—C3—C12—C1328.5 (3)
C5—N1—C2—C3−41.2 (2)C2—C3—C12—C13−92.0 (2)
N1—C2—C3—C12168.35 (16)C4—C3—C12—C17−154.38 (19)
C9—C2—C3—C12−77.7 (2)C2—C3—C12—C1785.1 (2)
C6—C2—C3—C1247.5 (2)C17—C12—C13—C14−1.5 (4)
N1—C2—C3—C439.90 (18)C3—C12—C13—C14175.6 (2)
C9—C2—C3—C4153.85 (16)C12—C13—C14—C150.3 (4)
C6—C2—C3—C4−80.93 (19)C13—C14—C15—C160.6 (4)
C12—C3—C4—C1882.3 (2)C14—C15—C16—C17−0.3 (4)
C2—C3—C4—C18−150.29 (17)C15—C16—C17—C12−1.0 (4)
C12—C3—C4—C5−153.43 (17)C13—C12—C17—C161.9 (4)
C2—C3—C4—C5−26.1 (2)C3—C12—C17—C16−175.4 (2)
C2—N1—C5—C21149.70 (17)C3—C4—C18—O59.5 (3)
C2—N1—C5—C424.5 (2)C5—C4—C18—O5−111.1 (2)
C18—C4—C5—N1127.43 (18)C3—C4—C18—C19−169.00 (17)
C3—C4—C5—N12.6 (2)C5—C4—C18—C1970.3 (2)
C18—C4—C5—C215.8 (2)C20—O7—C19—O6−0.1 (4)
C3—C4—C5—C21−118.94 (19)C20—O7—C19—C18−179.9 (2)
C7—O2—C6—O1−3.3 (3)O5—C18—C19—O6−153.7 (2)
C7—O2—C6—C2173.36 (18)C4—C18—C19—O624.9 (3)
N1—C2—C6—O1−19.7 (3)O5—C18—C19—O726.1 (3)
C9—C2—C6—O1−140.5 (2)C4—C18—C19—O7−155.34 (19)
C3—C2—C6—O193.2 (2)N1—C5—C21—C22133.7 (2)
N1—C2—C6—O2163.56 (16)C4—C5—C21—C22−109.2 (2)
C9—C2—C6—O242.8 (2)N1—C5—C21—C26−46.4 (3)
C3—C2—C6—O2−83.5 (2)C4—C5—C21—C2670.7 (3)
C6—O2—C7—C8−171.9 (3)C26—C21—C22—C230.5 (4)
C10—O4—C9—O38.3 (3)C5—C21—C22—C23−179.6 (2)
C10—O4—C9—C2−175.66 (19)C21—C22—C23—C240.1 (4)
N1—C2—C9—O396.2 (2)C22—C23—C24—C25−0.8 (5)
C6—C2—C9—O3−139.0 (2)C23—C24—C25—C260.8 (5)
C3—C2—C9—O3−14.3 (3)C22—C21—C26—C25−0.5 (4)
N1—C2—C9—O4−79.9 (2)C5—C21—C26—C25179.6 (2)
C6—C2—C9—O445.0 (2)C24—C25—C26—C21−0.1 (4)
C3—C2—C9—O4169.70 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.88 (2)2.27 (2)3.061 (2)150 (2)
C23—H23···O3ii0.932.543.461 (3)170
C25—H25···O7iii0.932.603.526 (3)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.88 (2)2.27 (2)3.061 (2)150 (2)
C23—H23⋯O3ii0.932.543.461 (3)170
C25—H25⋯O7iii0.932.603.526 (3)172

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  Pharmacophore-based discovery of 3,4-disubstituted pyrrolidines as a novel class of monoamine transporter inhibitors.

Authors:  I J Enyedy; W A Zaman; S Sakamuri; A P Kozikowski; K M Johnson; S Wang
Journal:  Bioorg Med Chem Lett       Date:  2001-05-07       Impact factor: 2.823

2.  Targeting the binding function 3 (BF3) site of the human androgen receptor through virtual screening.

Authors:  Nathan A Lack; Peter Axerio-Cilies; Peyman Tavassoli; Frank Q Han; Ka Hong Chan; Clementine Feau; Eric LeBlanc; Emma Tomlinson Guns; R Kiplin Guy; Paul S Rennie; Artem Cherkasov
Journal:  J Med Chem       Date:  2011-11-18       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  A novel pyrrolidine analog of histamine as a potent, highly selective histamine H3 receptor agonist.

Authors:  N Y Shih; A T Lupo; R Aslanian; S Orlando; J J Piwinski; M J Green; A K Ganguly; M A Clark; S Tozzi; W Kreutner
Journal:  J Med Chem       Date:  1995-05-12       Impact factor: 7.446

5.  Pyrrolo[3,4-c]quinoline-1,3-diones as potent caspase-3 inhibitors. Synthesis and SAR of 2-substituted 4-methyl-8-(morpholine-4-sulfonyl)-pyrrolo[3,4-c]quinoline-1,3-diones.

Authors:  Dmitri V Kravchenko; Volodymyr M Kysil; Sergey E Tkachenko; Sergey Maliarchouk; Ilya M Okun; Alexandre V Ivachtchenko
Journal:  Eur J Med Chem       Date:  2005-09-15       Impact factor: 6.514

  5 in total

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