Literature DB >> 22590224

Resorcinol ninhydrin complex: 1,5,9-trihy-droxy-8-oxatetra-cyclo-[7.7.0.0(2,7).0(10,15)]hexa-deca-2,4,6,10(15),11,13-hexaen-16-one.

T Uma Devi, S Priya, G Kalpana, S Selvanayagam, B Sridhar.   

Abstract

In the title compound, C(15)H(10)O(5), the cyclo-penta-none (r.m.s. deviation = 0.049 Å) and oxolane (r.m.s. deviation = 0.048 Å) rings make a dihedral angle of 67.91 (4)°. An intra-molecular O-H⋯O hydrogen bond is observed. In the crystal, mol-ecules associate via O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22590224      PMCID: PMC3344462          DOI: 10.1107/S1600536812014249

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to ninhydrin derivatives, see: Hansen & Joullie (2005 ▶); Leane et al. (2004 ▶). For general background to resorcinol derivatives, see: Chen et al. (2011 ▶); Bao et al. (2010 ▶); Zheng & Wu (2007 ▶).

Experimental

Crystal data

C15H10O5 M = 270.23 Monoclinic, a = 9.1117 (5) Å b = 12.2995 (7) Å c = 10.1177 (5) Å β = 91.837 (1)° V = 1133.30 (11) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 292 K 0.22 × 0.20 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 12939 measured reflections 2699 independent reflections 2468 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.05 2699 reflections 221 parameters All H-atom parameters refined Δρmax = 0.31 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶) and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812014249/bt5867sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812014249/bt5867Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812014249/bt5867Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10O5F(000) = 560
Mr = 270.23Dx = 1.584 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8468 reflections
a = 9.1117 (5) Åθ = 2.2–27.1°
b = 12.2995 (7) ŵ = 0.12 mm1
c = 10.1177 (5) ÅT = 292 K
β = 91.837 (1)°Block, colourless
V = 1133.30 (11) Å30.22 × 0.20 × 0.19 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2468 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
Graphite monochromatorθmax = 28.0°, θmin = 2.2°
ω scansh = −12→11
12939 measured reflectionsk = −16→16
2699 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0594P)2 + 0.3056P] where P = (Fo2 + 2Fc2)/3
2699 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.55633 (10)0.40497 (9)0.32526 (9)0.0416 (2)
O20.38544 (11)0.59167 (7)0.40684 (9)0.0382 (2)
H2A0.394 (2)0.5760 (16)0.490 (2)0.058 (5)*
O30.22262 (11)0.65338 (7)0.19634 (9)0.0369 (2)
H3A0.219 (2)0.689 (2)0.272 (2)0.080 (7)*
O4−0.12067 (11)0.24783 (9)0.55006 (10)0.0444 (3)
H4A−0.175 (2)0.2263 (19)0.479 (2)0.076 (6)*
O50.07320 (9)0.50826 (7)0.24520 (8)0.0336 (2)
C10.21080 (14)0.48007 (11)−0.02647 (12)0.0345 (3)
H10.1252 (19)0.5225 (14)−0.0506 (16)0.042 (4)*
C20.27738 (16)0.41740 (12)−0.12105 (13)0.0409 (3)
H20.2341 (19)0.4179 (14)−0.2090 (18)0.049 (4)*
C30.40256 (16)0.35623 (11)−0.09057 (14)0.0418 (3)
H30.4472 (19)0.3140 (14)−0.1582 (17)0.048 (4)*
C40.46396 (14)0.35571 (10)0.03612 (13)0.0366 (3)
H40.5509 (18)0.3132 (14)0.0606 (15)0.041 (4)*
C50.39742 (12)0.41873 (10)0.13132 (11)0.0301 (2)
C60.27356 (12)0.48078 (9)0.10008 (11)0.0285 (2)
C70.44307 (12)0.43593 (10)0.27024 (11)0.0302 (2)
C80.32381 (12)0.50301 (9)0.33703 (11)0.0283 (2)
C90.22170 (12)0.54241 (9)0.21795 (11)0.0289 (2)
C100.22056 (12)0.43138 (9)0.41014 (11)0.0278 (2)
C110.24218 (13)0.36685 (10)0.52153 (11)0.0310 (2)
H110.3393 (17)0.3619 (12)0.5676 (15)0.036 (4)*
C120.12568 (14)0.30692 (10)0.56731 (12)0.0336 (3)
H120.1362 (17)0.2601 (13)0.6454 (16)0.043 (4)*
C13−0.01040 (13)0.31088 (10)0.50070 (12)0.0328 (3)
C14−0.03552 (13)0.37657 (10)0.39052 (12)0.0331 (3)
H14−0.1314 (18)0.3805 (13)0.3462 (15)0.041 (4)*
C150.08212 (12)0.43688 (10)0.34892 (11)0.0290 (2)
U11U22U33U12U13U23
O10.0309 (4)0.0562 (6)0.0373 (5)0.0065 (4)−0.0056 (4)0.0060 (4)
O20.0455 (5)0.0369 (5)0.0315 (5)−0.0098 (4)−0.0097 (4)−0.0017 (4)
O30.0480 (5)0.0302 (4)0.0321 (5)0.0039 (4)−0.0046 (4)0.0019 (3)
O40.0441 (5)0.0478 (6)0.0416 (5)−0.0145 (4)0.0066 (4)−0.0008 (4)
O50.0264 (4)0.0455 (5)0.0288 (4)0.0020 (3)−0.0033 (3)0.0050 (3)
C10.0349 (6)0.0402 (6)0.0281 (6)−0.0044 (5)−0.0046 (4)0.0013 (5)
C20.0495 (7)0.0471 (7)0.0261 (6)−0.0107 (6)−0.0005 (5)−0.0029 (5)
C30.0504 (8)0.0396 (7)0.0360 (7)−0.0074 (6)0.0106 (6)−0.0079 (5)
C40.0357 (6)0.0338 (6)0.0408 (7)−0.0013 (5)0.0063 (5)−0.0008 (5)
C50.0292 (5)0.0319 (6)0.0293 (6)−0.0039 (4)−0.0003 (4)0.0019 (4)
C60.0293 (5)0.0311 (5)0.0250 (5)−0.0044 (4)−0.0006 (4)0.0009 (4)
C70.0269 (5)0.0333 (5)0.0304 (6)−0.0031 (4)−0.0015 (4)0.0047 (4)
C80.0288 (5)0.0309 (5)0.0249 (5)−0.0016 (4)−0.0051 (4)0.0006 (4)
C90.0292 (5)0.0316 (5)0.0258 (5)0.0004 (4)−0.0031 (4)0.0009 (4)
C100.0277 (5)0.0310 (5)0.0247 (5)0.0002 (4)−0.0006 (4)−0.0026 (4)
C110.0322 (6)0.0333 (6)0.0272 (5)0.0015 (4)−0.0031 (4)−0.0013 (4)
C120.0404 (6)0.0321 (6)0.0282 (6)0.0005 (5)0.0011 (5)−0.0002 (4)
C130.0354 (6)0.0323 (6)0.0310 (6)−0.0049 (5)0.0061 (4)−0.0067 (4)
C140.0284 (5)0.0397 (6)0.0310 (6)−0.0016 (5)−0.0011 (4)−0.0055 (5)
C150.0297 (5)0.0334 (6)0.0239 (5)0.0022 (4)−0.0013 (4)−0.0032 (4)
O1—C71.2178 (14)C4—H40.975 (17)
O2—C81.4063 (14)C5—C61.3904 (16)
O2—H2A0.87 (2)C5—C71.4683 (16)
O3—C91.3823 (14)C6—C91.5021 (16)
O3—H3A0.89 (2)C7—C81.5379 (16)
O4—C131.3756 (15)C8—C101.5011 (16)
O4—H4A0.90 (2)C8—C91.5749 (15)
O5—C151.3686 (14)C10—C111.3873 (16)
O5—C91.4516 (14)C10—C151.3890 (15)
C1—C21.3839 (19)C11—C121.3843 (17)
C1—C61.3855 (16)C11—H110.989 (16)
C1—H10.964 (17)C12—C131.3930 (18)
C2—C31.393 (2)C12—H120.979 (17)
C2—H20.962 (18)C13—C141.3899 (18)
C3—C41.382 (2)C14—C151.3803 (17)
C3—H30.960 (17)C14—H140.970 (16)
C4—C51.3907 (17)
C8—O2—H2A109.8 (13)O2—C8—C9111.24 (9)
C9—O3—H3A110.3 (15)C10—C8—C9101.15 (9)
C13—O4—H4A105.4 (14)C7—C8—C9103.73 (9)
C15—O5—C9107.37 (8)O3—C9—O5109.04 (9)
C2—C1—C6117.74 (12)O3—C9—C6111.66 (9)
C2—C1—H1119.7 (10)O5—C9—C6108.88 (9)
C6—C1—H1122.5 (10)O3—C9—C8114.73 (9)
C1—C2—C3121.46 (12)O5—C9—C8107.28 (9)
C1—C2—H2117.4 (10)C6—C9—C8105.01 (9)
C3—C2—H2121.1 (10)C11—C10—C15119.57 (11)
C4—C3—C2120.81 (12)C11—C10—C8131.39 (10)
C4—C3—H3119.4 (10)C15—C10—C8109.04 (10)
C2—C3—H3119.8 (10)C12—C11—C10119.08 (11)
C3—C4—C5117.86 (12)C12—C11—H11119.6 (9)
C3—C4—H4122.6 (9)C10—C11—H11121.3 (9)
C5—C4—H4119.5 (9)C11—C12—C13119.98 (11)
C6—C5—C4121.15 (11)C11—C12—H12121.8 (9)
C6—C5—C7109.97 (10)C13—C12—H12118.2 (9)
C4—C5—C7128.83 (11)O4—C13—C14121.03 (11)
C1—C6—C5120.97 (11)O4—C13—C12116.99 (11)
C1—C6—C9127.29 (11)C14—C13—C12121.97 (11)
C5—C6—C9111.73 (10)C15—C14—C13116.58 (11)
O1—C7—C5127.04 (11)C15—C14—H14121.9 (9)
O1—C7—C8124.56 (11)C13—C14—H14121.5 (9)
C5—C7—C8108.39 (9)O5—C15—C14123.43 (10)
O2—C8—C10117.01 (9)O5—C15—C10113.82 (10)
O2—C8—C7111.12 (9)C14—C15—C10122.74 (11)
C10—C8—C7111.37 (9)
C6—C1—C2—C30.49 (19)O2—C8—C9—O35.95 (14)
C1—C2—C3—C40.4 (2)C10—C8—C9—O3130.92 (10)
C2—C3—C4—C5−0.50 (19)C7—C8—C9—O3−113.58 (10)
C3—C4—C5—C6−0.34 (18)O2—C8—C9—O5−115.34 (10)
C3—C4—C5—C7−177.34 (12)C10—C8—C9—O59.63 (11)
C2—C1—C6—C5−1.33 (18)C7—C8—C9—O5125.13 (9)
C2—C1—C6—C9179.74 (11)O2—C8—C9—C6128.92 (10)
C4—C5—C6—C11.28 (18)C10—C8—C9—C6−106.11 (10)
C7—C5—C6—C1178.80 (10)C7—C8—C9—C69.39 (11)
C4—C5—C6—C9−179.63 (10)O2—C8—C10—C11−62.49 (17)
C7—C5—C6—C9−2.12 (13)C7—C8—C10—C1166.83 (15)
C6—C5—C7—O1−170.36 (12)C9—C8—C10—C11176.52 (12)
C4—C5—C7—O16.9 (2)O2—C8—C10—C15116.84 (11)
C6—C5—C7—C88.49 (13)C7—C8—C10—C15−113.83 (10)
C4—C5—C7—C8−174.24 (11)C9—C8—C10—C15−4.14 (12)
O1—C7—C8—O248.37 (15)C15—C10—C11—C121.69 (17)
C5—C7—C8—O2−130.52 (10)C8—C10—C11—C12−179.04 (11)
O1—C7—C8—C10−84.00 (14)C10—C11—C12—C130.81 (18)
C5—C7—C8—C1097.11 (10)C11—C12—C13—O4178.84 (11)
O1—C7—C8—C9167.98 (11)C11—C12—C13—C14−2.16 (18)
C5—C7—C8—C9−10.91 (11)O4—C13—C14—C15179.85 (11)
C15—O5—C9—O3−136.72 (9)C12—C13—C14—C150.90 (18)
C15—O5—C9—C6101.24 (10)C9—O5—C15—C14−170.98 (11)
C15—O5—C9—C8−11.91 (12)C9—O5—C15—C109.76 (13)
C1—C6—C9—O3−60.94 (15)C13—C14—C15—O5−177.48 (10)
C5—C6—C9—O3120.05 (11)C13—C14—C15—C101.71 (17)
C1—C6—C9—O559.51 (15)C11—C10—C15—O5176.22 (10)
C5—C6—C9—O5−119.51 (10)C8—C10—C15—O5−3.20 (13)
C1—C6—C9—C8174.14 (11)C11—C10—C15—C14−3.04 (18)
C5—C6—C9—C8−4.88 (12)C8—C10—C15—C14177.54 (10)
D—H···AD—HH···AD···AD—H···A
O4—H4A···O3i0.90 (2)2.02 (2)2.877 (1)158 (2)
O3—H3A···O4ii0.89 (2)2.18 (2)3.013 (1)157 (2)
O2—H2A···O1iii0.87 (2)1.92 (2)2.746 (1)159 (2)
O3—H3A···O20.89 (2)2.33 (2)2.667 (1)102 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯O3i0.90 (2)2.02 (2)2.877 (1)158 (2)
O3—H3A⋯O4ii0.89 (2)2.18 (2)3.013 (1)157 (2)
O2—H2A⋯O1iii0.87 (2)1.92 (2)2.746 (1)159 (2)
O3—H3A⋯O20.89 (2)2.33 (2)2.667 (1)102 (1)

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Use of the ninhydrin assay to measure the release of chitosan from oral solid dosage forms.

Authors:  M M Leane; R Nankervis; A Smith; L Illum
Journal:  Int J Pharm       Date:  2004-03-01       Impact factor: 5.875

Review 2.  The development of novel ninhydrin analogues.

Authors:  Darren B Hansen; Madeleine M Joullie
Journal:  Chem Soc Rev       Date:  2005-02-11       Impact factor: 54.564

3.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  J Asian Nat Prod Res       Date:  2011-08       Impact factor: 1.569

5.  Two new resorcinol derivatives with strong cytotoxicity from the roots of Ardisia brevicaulis Diels.

Authors:  Li Bao; Manyuan Wang; Feng Zhao; Yisong Zhao; Hongwei Liu
Journal:  Chem Biodivers       Date:  2010-12       Impact factor: 2.408

6.  Resorcinol derivatives from Ardisia maculosa.

Authors:  Ying Zheng; Feng-E Wu
Journal:  J Asian Nat Prod Res       Date:  2007 Sep-Dec       Impact factor: 1.569

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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