Literature DB >> 22590196

3,3'-(1,4-Phenyl-ene)bis-[2-(propyl-amino)-benzofuro[3,2-d]pyrimidin-4(3H)-one] ethanol disolvate.

Li Li, Yong-Nian Qu, Jian Gong, Yang-Gen Hu.   

Abstract

The title compound, C(32)H(28)N(6)O(4)·2C(2)H(5)OH, consists of two 2-(propyl-amino)-benzofuro[3,2-d]pyrimidin-4(3H)-one units connected, via one of the pyrimidine N atoms, to a bridging benzene ring in the 1,4 positions. Two ethanol solvent mol-ecules are also present. The main mol-ecule lies on a center of symmetry located at the center of the benzene ring. The fused-ring system of the benzofuro[3,2-d]pyrimidine moiety is nearly planar (r.m.s. deviation = 0.016 Å) and forms a dihedral angle of 78.21 (7)° with the central benzene ring. The crystal structure features O-H⋯O and N-H⋯O inter-actions. The C atoms of the propyl-amino side chain in the main mol-ecule and the ethyl group in the solvent mol-ecule are disordered over two positions, with site-occupancy factors 0.34:0.66 and 0.42:0.58, respectively.

Entities:  

Year:  2012        PMID: 22590196      PMCID: PMC3344434          DOI: 10.1107/S160053681201375X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound may be used as a precursor for obtaining bioactive mol­ecules with antitumor activity, see: Bellarosa et al. (1996) ▶. For the biological activity of benzofuropyrimidine derivatives, see: Moneam et al. (2004 ▶); Bodke & Sangapure (2003 ▶). For the crystal structures of other fused pyrimidinone derivatives, see: Hu et al. (2005 ▶, 2006 ▶, 2007 ▶, 2008 ▶).

Experimental

Crystal data

C32H28N6O4·2C2H6O M = 652.74 Monoclinic, a = 10.1933 (12) Å b = 13.6224 (16) Å c = 12.5249 (15) Å β = 105.409 (2)° V = 1676.7 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.14 × 0.12 × 0.10 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.988, T max = 0.991 10883 measured reflections 2941 independent reflections 2327 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.151 S = 1.03 2941 reflections 259 parameters 60 restraints H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681201375X/lr2054sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201375X/lr2054Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201375X/lr2054Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H28N6O4·2C2H6OF(000) = 692
Mr = 652.74Dx = 1.293 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3984 reflections
a = 10.1933 (12) Åθ = 2.3–26.6°
b = 13.6224 (16) ŵ = 0.09 mm1
c = 12.5249 (15) ÅT = 298 K
β = 105.409 (2)°Block, colorless
V = 1676.7 (3) Å30.14 × 0.12 × 0.10 mm
Z = 2
Bruker SMART 4K CCD area-detector diffractometer2941 independent reflections
Radiation source: fine-focus sealed tube2327 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −12→12
Tmin = 0.988, Tmax = 0.991k = −13→16
10883 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0753P)2 + 0.3428P] where P = (Fo2 + 2Fc2)/3
2941 reflections(Δ/σ)max = 0.001
259 parametersΔρmax = 0.17 e Å3
60 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.6148 (2)0.02496 (15)0.58223 (16)0.0567 (5)
H10.69190.04220.63760.068*
C20.53256 (19)0.09654 (14)0.52147 (15)0.0506 (5)
C30.4179 (2)0.07207 (15)0.43955 (16)0.0561 (5)
H30.36280.12100.39910.067*
C40.6653 (2)0.24409 (15)0.50513 (16)0.0538 (5)
C50.6309 (2)0.38471 (15)0.58744 (16)0.0546 (5)
C60.5310 (2)0.34514 (15)0.62721 (17)0.0594 (6)
C70.4899 (2)0.24663 (16)0.60962 (17)0.0588 (5)
C80.6399 (2)0.48678 (14)0.62188 (17)0.0587 (6)
C90.5417 (3)0.49804 (15)0.67922 (18)0.0654 (6)
C100.5178 (3)0.58535 (18)0.7266 (2)0.0794 (7)
H100.45140.59090.76470.095*
C110.5975 (3)0.66348 (18)0.7143 (2)0.0870 (9)
H110.58550.72360.74560.104*
C120.6954 (3)0.65482 (17)0.6563 (2)0.0861 (9)
H120.74730.70940.64940.103*
C130.7177 (3)0.56759 (16)0.6088 (2)0.0727 (7)
H130.78270.56270.56920.087*
C140.8284 (3)0.2270 (2)0.3940 (3)0.0960 (9)
H14A0.82530.18820.32850.115*0.58
H14B0.80230.29330.36880.115*0.58
H14C0.83510.29800.39900.115*0.42
H14D0.81450.20680.31760.115*0.42
C150.9688 (6)0.2310 (5)0.4575 (7)0.118 (2)0.58
H15A0.97640.26440.52720.141*0.58
H15B1.02230.26670.41680.141*0.58
C161.0198 (10)0.1280 (6)0.4782 (7)0.138 (3)0.58
H16A0.96950.09430.52190.207*0.58
H16B1.11460.12890.51720.207*0.58
H16C1.00810.09460.40880.207*0.58
C15'0.9540 (9)0.1753 (13)0.4727 (13)0.161 (6)0.42
H15C0.96050.19520.54830.194*0.42
H15D0.93950.10490.46820.194*0.42
C16'1.0849 (9)0.1976 (10)0.4471 (10)0.149 (4)0.42
H16D1.10450.14730.39990.223*0.42
H16E1.15660.19990.51470.223*0.42
H16F1.07840.25990.41030.223*0.42
C170.5680 (9)0.0856 (5)0.1674 (7)0.148 (3)0.66
H17A0.50090.10240.20550.223*0.66
H17B0.52540.08070.08940.223*0.66
H17C0.63680.13560.18030.223*0.66
C180.6292 (9)−0.0070 (5)0.2079 (5)0.118 (2)0.66
H18A0.5617−0.05880.18780.142*0.66
H18B0.7020−0.02160.17370.142*0.66
C17'0.6268 (14)0.0358 (14)0.1313 (9)0.137 (4)0.34
H17D0.70500.07780.15280.205*0.34
H17E0.55870.06650.07280.205*0.34
H17F0.6527−0.02580.10580.205*0.34
C18'0.5711 (10)0.0189 (12)0.2276 (7)0.099 (3)0.34
H18C0.52390.07720.24200.118*0.34
H18D0.5064−0.03490.21190.118*0.34
N10.56533 (17)0.19870 (11)0.54545 (13)0.0526 (4)
N20.70225 (18)0.33593 (12)0.52685 (15)0.0586 (5)
N30.7232 (2)0.18964 (13)0.44097 (17)0.0680 (5)
H3A0.69660.12990.42710.082*
O10.40323 (19)0.20284 (12)0.64207 (15)0.0807 (5)
O20.47273 (17)0.41186 (11)0.68384 (13)0.0729 (5)
O30.6821 (2)−0.00452 (14)0.32441 (15)0.0915 (6)
H3B0.6693−0.05770.35060.137*
U11U22U33U12U13U23
C10.0582 (12)0.0497 (12)0.0530 (11)−0.0030 (9)−0.0011 (9)−0.0018 (9)
C20.0579 (12)0.0437 (11)0.0488 (10)−0.0026 (9)0.0118 (9)−0.0019 (8)
C30.0608 (12)0.0466 (12)0.0537 (11)0.0037 (9)0.0028 (9)0.0055 (9)
C40.0551 (12)0.0461 (11)0.0563 (11)−0.0006 (9)0.0076 (9)0.0007 (9)
C50.0603 (12)0.0448 (11)0.0500 (10)−0.0001 (9)−0.0006 (9)0.0004 (9)
C60.0698 (13)0.0472 (12)0.0582 (12)0.0014 (10)0.0115 (10)−0.0089 (9)
C70.0677 (13)0.0522 (12)0.0563 (12)−0.0050 (11)0.0160 (10)−0.0041 (10)
C80.0683 (13)0.0435 (11)0.0517 (11)0.0035 (10)−0.0061 (10)−0.0004 (9)
C90.0775 (15)0.0475 (13)0.0591 (12)0.0056 (11)−0.0028 (11)−0.0069 (10)
C100.0969 (19)0.0583 (15)0.0710 (15)0.0152 (13)0.0012 (13)−0.0132 (12)
C110.115 (2)0.0478 (14)0.0770 (17)0.0193 (15)−0.0122 (16)−0.0084 (12)
C120.111 (2)0.0410 (13)0.0850 (17)0.0000 (13)−0.0106 (16)0.0040 (12)
C130.0867 (17)0.0468 (13)0.0709 (14)−0.0030 (11)−0.0030 (12)0.0050 (10)
C140.094 (2)0.0741 (18)0.136 (3)−0.0151 (16)0.059 (2)−0.0216 (17)
C150.082 (4)0.139 (6)0.149 (5)−0.045 (4)0.060 (4)−0.051 (5)
C160.142 (6)0.163 (7)0.107 (4)0.039 (5)0.029 (4)0.018 (4)
C15'0.142 (9)0.174 (10)0.181 (9)−0.029 (8)0.065 (8)0.033 (8)
C16'0.098 (6)0.193 (9)0.156 (7)0.000 (6)0.037 (5)0.007 (7)
C170.183 (6)0.123 (5)0.118 (4)0.041 (4)0.001 (4)0.004 (4)
C180.155 (6)0.110 (4)0.094 (4)0.021 (4)0.042 (4)−0.005 (3)
C17'0.151 (8)0.157 (9)0.107 (7)0.029 (7)0.042 (6)0.029 (7)
C18'0.095 (6)0.121 (8)0.083 (6)0.002 (6)0.030 (5)0.000 (6)
N10.0602 (10)0.0416 (9)0.0541 (9)−0.0036 (7)0.0120 (8)−0.0030 (7)
N20.0621 (10)0.0441 (10)0.0661 (11)−0.0044 (8)0.0110 (8)−0.0015 (8)
N30.0744 (12)0.0507 (10)0.0860 (13)−0.0094 (9)0.0339 (10)−0.0097 (9)
O10.0978 (13)0.0648 (11)0.0927 (12)−0.0184 (9)0.0484 (11)−0.0170 (9)
O20.0882 (11)0.0563 (10)0.0750 (10)−0.0013 (8)0.0233 (9)−0.0165 (8)
O30.1105 (15)0.0799 (12)0.0767 (12)−0.0173 (10)0.0123 (11)0.0047 (9)
C1—C3i1.373 (3)C14—H14B0.9700
C1—C21.376 (3)C14—H14C0.9700
C1—H10.9300C14—H14D0.9700
C2—C31.376 (3)C15—C161.494 (8)
C2—N11.444 (2)C15—H15A0.9700
C3—C1i1.373 (3)C15—H15B0.9700
C3—H30.9300C16—H16A0.9600
C4—N21.314 (3)C16—H16B0.9600
C4—N31.340 (3)C16—H16C0.9600
C4—N11.396 (3)C15'—C16'1.484 (9)
C5—N21.356 (3)C15'—H15C0.9700
C5—C61.359 (3)C15'—H15D0.9700
C5—C81.451 (3)C16'—H16D0.9600
C6—O21.380 (2)C16'—H16E0.9600
C6—C71.406 (3)C16'—H16F0.9600
C7—O11.221 (3)C17—C181.439 (7)
C7—N11.412 (3)C17—H17A0.9600
C8—C91.387 (4)C17—H17B0.9600
C8—C131.391 (3)C17—H17C0.9600
C9—O21.378 (3)C18—O31.415 (6)
C9—C101.379 (3)C18—H18A0.9700
C10—C111.372 (4)C18—H18B0.9700
C10—H100.9300C17'—C18'1.482 (9)
C11—C121.386 (4)C17'—H17D0.9600
C11—H110.9300C17'—H17E0.9600
C12—C131.375 (4)C17'—H17F0.9600
C12—H120.9300C18'—O31.457 (8)
C13—H130.9300C18'—H18C0.9700
C14—C151.442 (6)C18'—H18D0.9700
C14—N31.446 (3)N3—H3A0.8600
C14—C15'1.561 (9)O3—H3B0.8200
C14—H14A0.9700
C3i—C1—C2119.50 (18)N3—C14—H14D111.9
C3i—C1—H1120.3C15'—C14—H14D112.0
C2—C1—H1120.3H14A—C14—H14D17.5
C3—C2—C1120.85 (18)H14B—C14—H14D89.3
C3—C2—N1119.49 (17)H14C—C14—H14D109.6
C1—C2—N1119.65 (17)C14—C15—C16108.0 (6)
C1i—C3—C2119.65 (18)C14—C15—H15A110.1
C1i—C3—H3120.2C16—C15—H15A110.1
C2—C3—H3120.2C14—C15—H15B110.1
N2—C4—N3120.22 (19)C16—C15—H15B110.1
N2—C4—N1122.93 (19)H15A—C15—H15B108.4
N3—C4—N1116.85 (18)C16'—C15'—C14113.9 (9)
N2—C5—C6125.20 (19)C16'—C15'—H15C108.8
N2—C5—C8129.4 (2)C14—C15'—H15C108.8
C6—C5—C8105.39 (19)C16'—C15'—H15D108.8
C5—C6—O2113.20 (18)C14—C15'—H15D108.8
C5—C6—C7122.9 (2)H15C—C15'—H15D107.7
O2—C6—C7123.9 (2)C15'—C16'—H16D109.5
O1—C7—C6128.7 (2)C15'—C16'—H16E109.5
O1—C7—N1121.00 (19)H16D—C16'—H16E109.5
C6—C7—N1110.25 (19)C15'—C16'—H16F109.5
C9—C8—C13119.0 (2)H16D—C16'—H16F109.5
C9—C8—C5105.22 (19)H16E—C16'—H16F109.5
C13—C8—C5135.7 (2)O3—C18—C17110.6 (5)
O2—C9—C10124.5 (3)O3—C18—H18A109.5
O2—C9—C8111.97 (18)C17—C18—H18A109.5
C10—C9—C8123.5 (2)O3—C18—H18B109.5
C11—C10—C9116.3 (3)C17—C18—H18B109.5
C11—C10—H10121.8H18A—C18—H18B108.1
C9—C10—H10121.8C18'—C17'—H17D109.5
C10—C11—C12121.5 (2)C18'—C17'—H17E109.5
C10—C11—H11119.3H17D—C17'—H17E109.5
C12—C11—H11119.3C18'—C17'—H17F109.5
C13—C12—C11121.7 (3)H17D—C17'—H17F109.5
C13—C12—H12119.2H17E—C17'—H17F109.5
C11—C12—H12119.2O3—C18'—C17'109.3 (9)
C12—C13—C8117.9 (3)O3—C18'—H18C109.8
C12—C13—H13121.0C17'—C18'—H18C109.8
C8—C13—H13121.0O3—C18'—H18D109.8
C15—C14—N3121.6 (4)C17'—C18'—H18D109.8
C15—C14—C15'30.8 (5)H18C—C18'—H18D108.3
N3—C14—C15'99.0 (5)C4—N1—C7124.16 (18)
C15—C14—H14A106.9C4—N1—C2120.16 (16)
N3—C14—H14A106.9C7—N1—C2115.68 (16)
C15'—C14—H14A97.2C4—N2—C5114.54 (18)
C15—C14—H14B106.9C4—N3—C14122.8 (2)
N3—C14—H14B106.9C4—N3—H3A118.6
C15'—C14—H14B137.2C14—N3—H3A118.6
H14A—C14—H14B106.7C9—O2—C6104.22 (18)
C15—C14—H14C83.4C18—O3—C18'31.7 (4)
N3—C14—H14C111.9C18—O3—H3A124.5
C15'—C14—H14C112.2C18'—O3—H3A102.6
H14A—C14—H14C125.7C18—O3—H3B109.5
H14B—C14—H14C26.1C18'—O3—H3B110.8
C15—C14—H14D114.7H3A—O3—H3B119.4
C3i—C1—C2—C30.2 (3)N3—C14—C15'—C16'179.6 (12)
C3i—C1—C2—N1178.92 (18)N2—C4—N1—C72.6 (3)
C1—C2—C3—C1i−0.2 (4)N3—C4—N1—C7−176.89 (18)
N1—C2—C3—C1i−178.92 (18)N2—C4—N1—C2−177.97 (18)
N2—C5—C6—O2−178.42 (17)N3—C4—N1—C22.6 (3)
C8—C5—C6—O20.5 (2)O1—C7—N1—C4179.69 (19)
N2—C5—C6—C70.2 (3)C6—C7—N1—C4−0.5 (3)
C8—C5—C6—C7179.07 (19)O1—C7—N1—C20.2 (3)
C5—C6—C7—O1179.0 (2)C6—C7—N1—C2180.00 (17)
O2—C6—C7—O1−2.5 (4)C3—C2—N1—C4−101.3 (2)
C5—C6—C7—N1−0.7 (3)C1—C2—N1—C480.0 (2)
O2—C6—C7—N1177.70 (18)C3—C2—N1—C778.2 (2)
N2—C5—C8—C9178.42 (19)C1—C2—N1—C7−100.5 (2)
C6—C5—C8—C9−0.4 (2)N3—C4—N2—C5176.47 (18)
N2—C5—C8—C13−0.4 (4)N1—C4—N2—C5−3.0 (3)
C6—C5—C8—C13−179.3 (2)C6—C5—N2—C41.7 (3)
C13—C8—C9—O2179.31 (18)C8—C5—N2—C4−176.91 (18)
C5—C8—C9—O20.2 (2)N2—C4—N3—C140.8 (3)
C13—C8—C9—C10−1.3 (3)N1—C4—N3—C14−179.7 (2)
C5—C8—C9—C10179.6 (2)C15—C14—N3—C481.6 (4)
O2—C9—C10—C11179.4 (2)C15'—C14—N3—C4104.2 (8)
C8—C9—C10—C110.1 (3)C10—C9—O2—C6−179.3 (2)
C9—C10—C11—C120.7 (4)C8—C9—O2—C60.0 (2)
C10—C11—C12—C13−0.2 (4)C5—C6—O2—C9−0.3 (2)
C11—C12—C13—C8−0.9 (3)C7—C6—O2—C9−178.9 (2)
C9—C8—C13—C121.6 (3)C17—C18—O3—C18'44.0 (11)
C5—C8—C13—C12−179.6 (2)C17—C18—O3—H3A−8.6
N3—C14—C15—C1668.1 (6)C17'—C18'—O3—C18−29.5 (10)
C15'—C14—C15—C1620.3 (14)C17'—C18'—O3—H3A108.4
C15—C14—C15'—C16'−40.1 (9)
D—H···AD—HH···AD···AD—H···A
N3—H3a···O30.862.222.996 (3)150
O3—H3b···O1i0.822.122.903 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3a⋯O30.862.222.996 (3)150
O3—H3b⋯O1i0.822.122.903 (3)159

Symmetry code: (i) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New arylpyrido-diazepine and -thiodiazepine derivatives are potent and highly selective HIV-1 inhibitors targeted at the reverse transcriptase.

Authors:  D Bellarosa; G Antonelli; F Bambacioni; D Giannotti; G Viti; R Nannicini; A Giachetti; F Dianzani; M Witvrouw; R Pauwels; J Desmyter; E De Clercq
Journal:  Antiviral Res       Date:  1996-05       Impact factor: 5.970

3.  Ethyl 2-[1-(4-chloro-phen-yl)-2,5-dioxo-1,2,3,5-tetra-hydro-imidazo[1',2':1,2]pyrimidino[5,4-b][1]benzofuran-3-yl]acetate.

Authors:  Yang-Gen Hu; Zheng-Rong Zhu; Yu-Lu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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