Literature DB >> 22590187

Dichloridobis[2-(1-hydrazinylideneeth-yl)pyrazine-κN(1)]zinc.

Li-Li Liang1, Meng Li, Jia-Cheng Liu, Yun Wei.   

Abstract

In the structure of the title complex, [ZnCl(2)(C(6)H(8)N(4))(2)], the Zn(II) atom has a distorted octa-hedral geometry. Two cis Cl(-) ions and four N atoms belonging to two different 2-(1-hydrazinylideneeth-yl)pyrazine ligands coordinate the Zn(II) atom, forming two five-membered Zn-N-C-C-N rings. The dihedral angle between the planes of these metallocycles is 88.13 (4)°. The organic ligands are essentially planar (r.m.s. deviations from planarity = 0.072 and 0.040 Å). Inter-molecular N-H⋯N and N-H⋯Cl inter-actions join the mol-ecules into a three-dimensional framework.

Entities:  

Year:  2012        PMID: 22590187      PMCID: PMC3344425          DOI: 10.1107/S1600536812016418

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biochemical applications of complexes based on ligands containing pyrazine, see: Ha et al. (1999 ▶); Blackstock et al. (2000 ▶); Adams et al. (2002 ▶); Lee et al. (2012 ▶). For the preparation of the ligand, see: Stadler et al. (2010 ▶).

Experimental

Crystal data

[ZnCl2(C6H8N4)2] M = 408.60 Monoclinic, a = 8.4289 (8) Å b = 15.1128 (14) Å c = 13.4196 (13) Å β = 104.077 (1)° V = 1658.1 (3) Å3 Z = 4 Mo Kα radiation μ = 1.81 mm−1 T = 296 K 0.20 × 0.18 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.713, T max = 0.773 11576 measured reflections 4132 independent reflections 3456 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.078 S = 1.03 4132 reflections 223 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812016418/pk2404sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016418/pk2404Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C6H8N4)2]F(000) = 832
Mr = 408.60Dx = 1.637 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4411 reflections
a = 8.4289 (8) Åθ = 2.7–28.2°
b = 15.1128 (14) ŵ = 1.81 mm1
c = 13.4196 (13) ÅT = 296 K
β = 104.077 (1)°Block, colourless
V = 1658.1 (3) Å30.20 × 0.18 × 0.15 mm
Z = 4
Bruker APEXII CCD diffractometer4132 independent reflections
Radiation source: fine-focus sealed tube3456 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→11
Tmin = 0.713, Tmax = 0.773k = −18→20
11576 measured reflectionsl = −9→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.042P)2 + 0.3057P] where P = (Fo2 + 2Fc2)/3
4132 reflections(Δ/σ)max = 0.009
223 parametersΔρmax = 0.42 e Å3
4 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.79801 (2)0.074400 (13)0.764996 (15)0.03098 (8)
Cl10.74457 (6)0.17192 (3)0.89354 (4)0.04074 (12)
Cl20.61902 (6)−0.03984 (4)0.78802 (4)0.04526 (13)
N11.2922 (2)0.25410 (13)0.75292 (16)0.0535 (5)
N21.00732 (17)0.16076 (10)0.75046 (11)0.0322 (3)
N31.01610 (18)0.01092 (10)0.85368 (11)0.0331 (3)
N41.0037 (3)−0.06823 (12)0.89868 (16)0.0478 (5)
H1N41.076 (3)−0.0850 (16)0.9461 (18)0.057*
H2N40.909 (3)−0.0860 (17)0.892 (2)0.057*
N50.8091 (3)−0.09261 (13)0.44379 (15)0.0533 (5)
N60.82991 (18)−0.00119 (10)0.62587 (11)0.0327 (3)
N70.65102 (18)0.14165 (10)0.63190 (12)0.0330 (3)
N80.5788 (2)0.22084 (12)0.64252 (16)0.0473 (4)
H1N80.493 (3)0.2340 (17)0.5969 (17)0.057*
H2N80.568 (3)0.2228 (17)0.7042 (15)0.057*
C11.1478 (3)0.28105 (15)0.69904 (19)0.0508 (5)
H11.14140.33280.66070.061*
C21.0057 (2)0.23502 (12)0.69773 (16)0.0405 (4)
H20.90650.25670.65890.049*
C31.1533 (2)0.13197 (12)0.80650 (14)0.0329 (4)
C41.2941 (2)0.18004 (14)0.80619 (18)0.0459 (5)
H41.39390.15930.84510.055*
C51.1551 (2)0.05001 (13)0.86525 (14)0.0333 (4)
C61.3119 (2)0.01689 (16)0.93253 (16)0.0478 (5)
H6A1.2922−0.03760.96430.072*
H6B1.35460.06000.98470.072*
H6C1.38940.00700.89190.072*
C70.9003 (3)−0.12098 (14)0.53299 (17)0.0476 (5)
H70.9594−0.17310.53440.057*
C80.9103 (3)−0.07594 (12)0.62350 (17)0.0405 (4)
H80.9752−0.09860.68430.049*
C90.7363 (2)0.02954 (12)0.53650 (14)0.0321 (4)
C100.7270 (3)−0.01761 (14)0.44637 (15)0.0433 (5)
H100.66080.00400.38540.052*
C110.6464 (2)0.11247 (12)0.54143 (14)0.0332 (4)
C120.5611 (3)0.15970 (16)0.44551 (17)0.0542 (6)
H12A0.44860.16890.44590.081*
H12B0.56710.12470.38680.081*
H12C0.61280.21590.44220.081*
U11U22U33U12U13U23
Zn10.02815 (12)0.03323 (12)0.02997 (12)−0.00097 (8)0.00402 (8)0.00062 (8)
Cl10.0421 (2)0.0393 (3)0.0413 (3)0.00117 (19)0.01106 (19)−0.00545 (19)
Cl20.0444 (3)0.0473 (3)0.0443 (3)−0.0159 (2)0.0113 (2)−0.0026 (2)
N10.0427 (10)0.0487 (11)0.0738 (14)−0.0098 (8)0.0232 (10)−0.0013 (9)
N20.0295 (7)0.0318 (7)0.0353 (8)−0.0001 (6)0.0078 (6)−0.0032 (6)
N30.0339 (8)0.0326 (8)0.0309 (8)0.0006 (6)0.0044 (6)0.0015 (6)
N40.0466 (11)0.0423 (10)0.0485 (11)−0.0012 (8)−0.0003 (9)0.0142 (8)
N50.0660 (13)0.0522 (11)0.0441 (11)0.0055 (9)0.0181 (9)−0.0093 (8)
N60.0328 (8)0.0319 (8)0.0326 (8)0.0006 (6)0.0064 (6)0.0008 (6)
N70.0286 (7)0.0313 (7)0.0390 (9)0.0020 (6)0.0081 (6)0.0001 (6)
N80.0458 (10)0.0413 (10)0.0545 (11)0.0136 (8)0.0115 (9)0.0010 (8)
C10.0531 (13)0.0376 (11)0.0671 (15)−0.0016 (9)0.0250 (11)0.0061 (10)
C20.0400 (10)0.0351 (10)0.0466 (11)0.0033 (8)0.0110 (8)0.0030 (8)
C30.0275 (8)0.0381 (10)0.0334 (9)−0.0009 (7)0.0084 (7)−0.0060 (7)
C40.0317 (10)0.0515 (12)0.0557 (13)−0.0047 (9)0.0130 (9)−0.0018 (10)
C50.0290 (9)0.0412 (10)0.0284 (9)0.0034 (7)0.0047 (7)−0.0043 (7)
C60.0331 (10)0.0616 (14)0.0448 (12)0.0089 (9)0.0018 (9)0.0065 (10)
C70.0530 (13)0.0399 (11)0.0527 (13)0.0083 (9)0.0185 (10)−0.0033 (9)
C80.0412 (11)0.0369 (10)0.0432 (11)0.0056 (8)0.0098 (9)0.0018 (8)
C90.0300 (8)0.0349 (9)0.0319 (9)−0.0030 (7)0.0083 (7)0.0019 (7)
C100.0498 (12)0.0462 (11)0.0330 (10)0.0011 (9)0.0079 (9)−0.0016 (8)
C110.0293 (9)0.0340 (9)0.0343 (9)−0.0004 (7)0.0042 (7)0.0054 (7)
C120.0656 (15)0.0501 (13)0.0408 (12)0.0119 (11)0.0011 (10)0.0117 (9)
Zn1—N32.1568 (15)N8—H2N80.857 (18)
Zn1—N72.1637 (15)C1—C21.382 (3)
Zn1—N22.2408 (15)C1—H10.9300
Zn1—N62.2600 (15)C2—H20.9300
Zn1—Cl22.3620 (5)C3—C41.392 (3)
Zn1—Cl12.3934 (5)C3—C51.466 (3)
N1—C11.320 (3)C4—H40.9300
N1—C41.326 (3)C5—C61.493 (3)
N2—C21.325 (2)C6—H6A0.9600
N2—C31.349 (2)C6—H6B0.9600
N3—C51.288 (2)C6—H6C0.9600
N3—N41.355 (2)C7—C81.377 (3)
N4—H1N40.806 (19)C7—H70.9300
N4—H2N40.827 (19)C8—H80.9300
N5—C71.326 (3)C9—C101.389 (3)
N5—C101.333 (3)C9—C111.474 (3)
N6—C81.322 (2)C10—H100.9300
N6—C91.348 (2)C11—C121.494 (3)
N7—C111.283 (2)C12—H12A0.9600
N7—N81.366 (2)C12—H12B0.9600
N8—H1N80.850 (19)C12—H12C0.9600
N3—Zn1—N7154.76 (6)N2—C2—H2119.2
N3—Zn1—N273.96 (6)C1—C2—H2119.2
N7—Zn1—N287.67 (5)N2—C3—C4119.51 (18)
N3—Zn1—N688.53 (6)N2—C3—C5117.46 (16)
N7—Zn1—N673.43 (6)C4—C3—C5123.03 (17)
N2—Zn1—N688.17 (5)N1—C4—C3122.96 (19)
N3—Zn1—Cl295.08 (4)N1—C4—H4118.5
N7—Zn1—Cl2101.28 (4)C3—C4—H4118.5
N2—Zn1—Cl2168.11 (4)N3—C5—C3115.63 (15)
N6—Zn1—Cl286.94 (4)N3—C5—C6124.36 (18)
N3—Zn1—Cl199.25 (4)C3—C5—C6120.01 (17)
N7—Zn1—Cl197.78 (4)C5—C6—H6A109.5
N2—Zn1—Cl189.67 (4)C5—C6—H6B109.5
N6—Zn1—Cl1171.02 (4)H6A—C6—H6B109.5
Cl2—Zn1—Cl196.76 (2)C5—C6—H6C109.5
C1—N1—C4116.34 (18)H6A—C6—H6C109.5
C2—N2—C3117.43 (16)H6B—C6—H6C109.5
C2—N2—Zn1129.32 (13)N5—C7—C8122.3 (2)
C3—N2—Zn1113.23 (12)N5—C7—H7118.9
C5—N3—N4121.17 (16)C8—C7—H7118.9
C5—N3—Zn1119.41 (12)N6—C8—C7121.45 (19)
N4—N3—Zn1119.40 (13)N6—C8—H8119.3
N3—N4—H1N4120.3 (19)C7—C8—H8119.3
N3—N4—H2N4114.6 (18)N6—C9—C10119.67 (18)
H1N4—N4—H2N4120 (3)N6—C9—C11116.67 (16)
C7—N5—C10116.23 (18)C10—C9—C11123.65 (17)
C8—N6—C9117.76 (17)N5—C10—C9122.61 (19)
C8—N6—Zn1128.07 (13)N5—C10—H10118.7
C9—N6—Zn1113.55 (12)C9—C10—H10118.7
C11—N7—N8119.22 (16)N7—C11—C9115.91 (15)
C11—N7—Zn1119.93 (12)N7—C11—C12123.24 (18)
N8—N7—Zn1120.38 (13)C9—C11—C12120.81 (18)
N7—N8—H1N8117.0 (17)C11—C12—H12A109.5
N7—N8—H2N8106.8 (17)C11—C12—H12B109.5
H1N8—N8—H2N8114 (2)H12A—C12—H12B109.5
N1—C1—C2122.2 (2)C11—C12—H12C109.5
N1—C1—H1118.9H12A—C12—H12C109.5
C2—C1—H1118.9H12B—C12—H12C109.5
N2—C2—C1121.55 (19)
N3—Zn1—N2—C2178.63 (17)C4—N1—C1—C20.0 (3)
N7—Zn1—N2—C216.15 (17)C3—N2—C2—C10.6 (3)
N6—Zn1—N2—C289.63 (17)Zn1—N2—C2—C1178.73 (15)
Cl2—Zn1—N2—C2155.39 (16)N1—C1—C2—N2−0.3 (3)
Cl1—Zn1—N2—C2−81.65 (16)C2—N2—C3—C4−0.5 (3)
N3—Zn1—N2—C3−3.15 (12)Zn1—N2—C3—C4−178.93 (14)
N7—Zn1—N2—C3−165.63 (13)C2—N2—C3—C5179.72 (16)
N6—Zn1—N2—C3−92.15 (13)Zn1—N2—C3—C51.3 (2)
Cl2—Zn1—N2—C3−26.4 (3)C1—N1—C4—C30.1 (3)
Cl1—Zn1—N2—C396.57 (12)N2—C3—C4—N10.1 (3)
N7—Zn1—N3—C550.1 (2)C5—C3—C4—N1179.9 (2)
N2—Zn1—N3—C55.20 (13)N4—N3—C5—C3175.73 (17)
N6—Zn1—N3—C593.72 (14)Zn1—N3—C5—C3−6.2 (2)
Cl2—Zn1—N3—C5−179.49 (13)N4—N3—C5—C6−4.0 (3)
Cl1—Zn1—N3—C5−81.77 (14)Zn1—N3—C5—C6174.13 (15)
N7—Zn1—N3—N4−131.82 (16)N2—C3—C5—N33.1 (3)
N2—Zn1—N3—N4−176.68 (16)C4—C3—C5—N3−176.72 (18)
N6—Zn1—N3—N4−88.16 (15)N2—C3—C5—C6−177.23 (17)
Cl2—Zn1—N3—N4−1.36 (15)C4—C3—C5—C63.0 (3)
Cl1—Zn1—N3—N496.35 (15)C10—N5—C7—C80.0 (3)
N3—Zn1—N6—C823.01 (17)C9—N6—C8—C70.4 (3)
N7—Zn1—N6—C8−174.88 (17)Zn1—N6—C8—C7170.70 (15)
N2—Zn1—N6—C897.01 (17)N5—C7—C8—N6−0.5 (3)
Cl2—Zn1—N6—C8−72.15 (16)C8—N6—C9—C100.3 (3)
N3—Zn1—N6—C9−166.32 (13)Zn1—N6—C9—C10−171.45 (14)
N7—Zn1—N6—C9−4.21 (12)C8—N6—C9—C11179.32 (17)
N2—Zn1—N6—C9−92.33 (13)Zn1—N6—C9—C117.6 (2)
Cl2—Zn1—N6—C998.51 (12)C7—N5—C10—C90.7 (3)
N3—Zn1—N7—C1146.0 (2)N6—C9—C10—N5−0.8 (3)
N2—Zn1—N7—C1188.76 (14)C11—C9—C10—N5−179.8 (2)
N6—Zn1—N7—C11−0.03 (14)N8—N7—C11—C9176.15 (16)
Cl2—Zn1—N7—C11−83.36 (14)Zn1—N7—C11—C94.0 (2)
Cl1—Zn1—N7—C11178.11 (14)N8—N7—C11—C12−1.8 (3)
N3—Zn1—N7—N8−126.06 (16)Zn1—N7—C11—C12−174.00 (16)
N2—Zn1—N7—N8−83.33 (14)N6—C9—C11—N7−7.9 (2)
N6—Zn1—N7—N8−172.11 (15)C10—C9—C11—N7171.15 (18)
Cl2—Zn1—N7—N8104.55 (14)N6—C9—C11—C12170.15 (18)
Cl1—Zn1—N7—N86.02 (14)C10—C9—C11—C12−10.8 (3)
D—H···AD—HH···AD···AD—H···A
N8—H2N8···Cl10.86 (2)2.73 (2)3.400 (2)137 (2)
N8—H2N8···N1i0.86 (2)2.60 (2)3.165 (3)124 (2)
N4—H2N4···Cl20.83 (2)2.60 (2)3.250 (2)137 (2)
N4—H1N4···Cl1ii0.81 (2)2.66 (2)3.4429 (19)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N8—H2N8⋯Cl10.86 (2)2.73 (2)3.400 (2)137 (2)
N8—H2N8⋯N1i0.86 (2)2.60 (2)3.165 (3)124 (2)
N4—H2N4⋯Cl20.83 (2)2.60 (2)3.250 (2)137 (2)
N4—H1N4⋯Cl1ii0.81 (2)2.66 (2)3.4429 (19)165 (2)

Symmetry codes: (i) ; (ii) .

  5 in total

Review 1.  The FEMA GRAS assessment of pyrazine derivatives used as flavor ingredients. Flavor and Extract Manufacturers Association.

Authors:  T B Adams; J Doull; V J Feron; J I Goodman; L J Marnett; I C Munro; P M Newberne; P S Portoghese; R L Smith; W J Waddell; B M Wagner
Journal:  Food Chem Toxicol       Date:  2002-04       Impact factor: 6.023

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Ru(II) multinuclear metallosupramolecular rack-type architectures of polytopic hydrazone-based ligands: synthesis, structural features, absorption spectra, redox behavior, and near-infrared luminescence.

Authors:  Adrian-Mihail Stadler; Fausto Puntoriero; Francesco Nastasi; Sebastiano Campagna; Jean-Marie Lehn
Journal:  Chemistry       Date:  2010-05-17       Impact factor: 5.236

4.  2-(Allylthio)pyrazine inhibition of aflatoxin B1-induced hepatocarcinogenesis in rats.

Authors:  T G Ha; J J Jang; S G Kim; N D Kim
Journal:  Chem Biol Interact       Date:  1999-07-01       Impact factor: 5.192

5.  Phase II study of pyrazine diazohydroxide (NSC 361456) for advanced non small-cell lung cancer.

Authors:  A W Blackstock; J Acostamadiedo; G Lesser; F Richards; L D Case; D R White
Journal:  Clin Lung Cancer       Date:  2000-08       Impact factor: 4.785

  5 in total

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