Literature DB >> 22590159

(2,2'-Bipyrimidine-κ(2)N(1),N(1'))bis-(thio-cyanato-κN)platinum(II).

Kwang Ha1.   

Abstract

In the title complex, [Pt(NCS)(2)(C(8)n class="Species">H(6)N(4))], the Pt(II) ion is four-coordinated in a distorted square-planar environment defined by two pyrimidine N atoms derived from a chelating 2,2'-bipyrimidine (bpym) ligand and two mutually cis N atoms from two SCN(-) anions. The thio-cyanate ligands are almost linear, displaying N-C-S bond angles of 178.6 (11) and 173.7 (11)°, and the N atoms are slightly bent coordinated to the Pt atom with Pt-N-C bond angles of 172.7 (9) and 160.4 (10)°. In the crystal, mol-ecules are held together by C-H⋯S hydrogen bonds. Intra-molecular C-H⋯N hydrogen bonds are also observed.

Entities:  

Year:  2012        PMID: 22590159      PMCID: PMC3344397          DOI: 10.1107/S1600536812017552

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related PtII complexes [PtX 2(bpym)] (X = Cl, I or Br), see: Kaim et al. (2002 ▶); Ha (2010 ▶, 2011 ▶).

Experimental

Crystal data

[Pt(NCS)2(C8H6N4)] M = 469.42 Monoclinic, a = 11.0871 (8) Å b = 9.8779 (7) Å c = 12.8790 (9) Å β = 115.135 (1)° V = 1276.91 (16) Å3 Z = 4 Mo Kα radiation μ = 11.31 mm−1 T = 200 K 0.34 × 0.28 × 0.28 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.680, T max = 1.000 7611 measured reflections 2467 independent reflections 2179 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.105 S = 1.09 2467 reflections 172 parameters H-atom parameters constrained Δρmax = 4.86 e Å−3 Δρmin = −1.72 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017552/bt5882sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017552/bt5882Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pt(NCS)2(C8H6N4)]F(000) = 872
Mr = 469.42Dx = 2.442 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5056 reflections
a = 11.0871 (8) Åθ = 2.7–26.0°
b = 9.8779 (7) ŵ = 11.31 mm1
c = 12.8790 (9) ÅT = 200 K
β = 115.135 (1)°Block, orange
V = 1276.91 (16) Å30.34 × 0.28 × 0.28 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2467 independent reflections
Radiation source: fine-focus sealed tube2179 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scansθmax = 26.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −13→13
Tmin = 0.680, Tmax = 1.000k = −12→11
7611 measured reflectionsl = −15→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.030P)2 + 21.4936P] where P = (Fo2 + 2Fc2)/3
2467 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 4.86 e Å3
0 restraintsΔρmin = −1.72 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt10.16191 (4)0.40380 (4)0.58301 (3)0.04005 (15)
S1−0.0058 (3)0.6087 (4)0.8261 (3)0.0601 (8)
S20.0260 (3)−0.0068 (3)0.6854 (3)0.0519 (7)
N10.2144 (8)0.5882 (9)0.5497 (7)0.0382 (18)
N20.3270 (10)0.6962 (9)0.4524 (8)0.050 (2)
N30.3600 (10)0.4377 (10)0.3743 (8)0.049 (2)
N40.2425 (8)0.3496 (9)0.4767 (7)0.0385 (18)
N50.0853 (9)0.4748 (10)0.6838 (8)0.048 (2)
N60.1173 (10)0.2136 (11)0.6120 (8)0.058 (3)
C10.1920 (10)0.7047 (11)0.5879 (8)0.042 (2)
H10.14560.70780.63520.051*
C20.2375 (11)0.8237 (12)0.5579 (9)0.048 (3)
H20.22140.90910.58350.057*
C30.3061 (12)0.8148 (11)0.4906 (9)0.049 (3)
H30.33900.89500.47110.059*
C40.2822 (10)0.5887 (11)0.4827 (8)0.041 (2)
C50.2989 (10)0.4514 (11)0.4419 (9)0.041 (2)
C60.3601 (12)0.3115 (12)0.3349 (10)0.054 (3)
H60.40170.29730.28480.064*
C70.3040 (13)0.2034 (12)0.3627 (10)0.055 (3)
H70.30420.11610.33170.066*
C80.2465 (11)0.2250 (11)0.4376 (9)0.047 (2)
H80.20970.15110.46150.056*
C90.0462 (10)0.5294 (12)0.7422 (9)0.046 (3)
C100.0757 (10)0.1268 (10)0.6445 (9)0.038 (2)
U11U22U33U12U13U23
Pt10.0392 (2)0.0493 (3)0.0308 (2)−0.00470 (17)0.01392 (16)0.00473 (17)
S10.0539 (17)0.082 (2)0.0512 (17)0.0017 (16)0.0284 (14)−0.0038 (16)
S20.0481 (15)0.0567 (17)0.0519 (16)−0.0078 (13)0.0222 (13)0.0038 (13)
N10.035 (4)0.052 (5)0.025 (4)0.000 (4)0.010 (3)0.002 (4)
N20.068 (6)0.040 (5)0.051 (5)−0.003 (4)0.034 (5)0.000 (4)
N30.059 (6)0.050 (6)0.047 (5)−0.002 (4)0.030 (5)−0.001 (4)
N40.041 (4)0.043 (5)0.030 (4)−0.005 (4)0.014 (4)0.002 (4)
N50.052 (5)0.058 (6)0.040 (5)−0.004 (5)0.025 (4)−0.007 (4)
N60.062 (6)0.072 (7)0.039 (5)−0.018 (5)0.020 (5)0.003 (5)
C10.046 (6)0.045 (6)0.032 (5)0.003 (5)0.013 (4)−0.009 (4)
C20.049 (6)0.056 (7)0.032 (5)0.002 (5)0.012 (5)−0.008 (5)
C30.062 (7)0.043 (6)0.047 (6)−0.012 (5)0.028 (5)−0.007 (5)
C40.036 (5)0.055 (6)0.029 (5)−0.003 (5)0.011 (4)0.004 (4)
C50.040 (5)0.043 (6)0.040 (6)−0.005 (4)0.016 (5)0.000 (4)
C60.066 (7)0.050 (7)0.052 (7)0.003 (6)0.032 (6)−0.005 (5)
C70.072 (8)0.044 (6)0.047 (6)0.008 (6)0.021 (6)−0.002 (5)
C80.053 (6)0.043 (6)0.043 (6)−0.007 (5)0.019 (5)−0.002 (5)
C90.043 (6)0.048 (6)0.041 (6)−0.006 (5)0.011 (5)0.009 (5)
C100.048 (6)0.028 (5)0.041 (5)−0.006 (4)0.023 (5)0.001 (4)
Pt1—N12.014 (9)N5—C91.151 (14)
Pt1—N41.999 (8)N6—C101.135 (13)
Pt1—N51.958 (9)C1—C21.397 (16)
Pt1—N62.017 (11)C1—H10.9500
S1—C91.625 (13)C2—C31.378 (15)
S2—C101.602 (10)C2—H20.9500
N1—C11.316 (13)C3—H30.9500
N1—C41.363 (13)C4—C51.494 (15)
N2—C41.301 (13)C6—C71.359 (17)
N2—C31.328 (14)C6—H60.9500
N3—C51.318 (14)C7—C81.380 (16)
N3—C61.346 (14)C7—H70.9500
N4—C81.338 (13)C8—H80.9500
N4—C51.357 (13)
N5—Pt1—N4174.5 (4)C1—C2—H2120.6
N5—Pt1—N193.6 (4)N2—C3—C2121.3 (11)
N4—Pt1—N180.9 (3)N2—C3—H3119.4
N5—Pt1—N690.1 (4)C2—C3—H3119.4
N4—Pt1—N695.4 (4)N2—C4—N1125.1 (10)
N1—Pt1—N6176.2 (4)N2—C4—C5121.0 (9)
C1—N1—C4118.5 (9)N1—C4—C5113.8 (9)
C1—N1—Pt1126.4 (7)N3—C5—N4125.5 (10)
C4—N1—Pt1115.1 (7)N3—C5—C4120.1 (9)
C4—N2—C3117.4 (9)N4—C5—C4114.4 (9)
C5—N3—C6115.3 (10)N3—C6—C7123.7 (11)
C8—N4—C5117.6 (9)N3—C6—H6118.1
C8—N4—Pt1126.9 (7)C7—C6—H6118.1
C5—N4—Pt1115.5 (7)C6—C7—C8117.5 (11)
C9—N5—Pt1172.7 (9)C6—C7—H7121.3
C10—N6—Pt1160.4 (10)C8—C7—H7121.3
N1—C1—C2118.9 (10)N4—C8—C7120.3 (10)
N1—C1—H1120.5N4—C8—H8119.8
C2—C1—H1120.5C7—C8—H8119.8
C3—C2—C1118.8 (10)N5—C9—S1178.6 (11)
C3—C2—H2120.6N6—C10—S2173.7 (11)
N5—Pt1—N1—C1−1.9 (8)Pt1—N1—C4—N2−178.9 (8)
N4—Pt1—N1—C1177.6 (9)C1—N1—C4—C5−178.5 (8)
N5—Pt1—N1—C4176.6 (7)Pt1—N1—C4—C52.8 (10)
N4—Pt1—N1—C4−3.9 (7)C6—N3—C5—N42.6 (16)
N1—Pt1—N4—C8−175.8 (9)C6—N3—C5—C4−174.8 (10)
N6—Pt1—N4—C85.2 (9)C8—N4—C5—N3−1.5 (16)
N1—Pt1—N4—C54.4 (7)Pt1—N4—C5—N3178.3 (9)
N6—Pt1—N4—C5−174.5 (7)C8—N4—C5—C4176.0 (9)
N5—Pt1—N6—C105 (3)Pt1—N4—C5—C4−4.2 (11)
N4—Pt1—N6—C10−174 (3)N2—C4—C5—N30.2 (16)
C4—N1—C1—C20.4 (14)N1—C4—C5—N3178.5 (9)
Pt1—N1—C1—C2178.9 (7)N2—C4—C5—N4−177.5 (9)
N1—C1—C2—C3−0.9 (15)N1—C4—C5—N40.9 (13)
C4—N2—C3—C2−1.2 (17)C5—N3—C6—C7−1.1 (18)
C1—C2—C3—N21.3 (17)N3—C6—C7—C8−1.4 (19)
C3—N2—C4—N10.7 (16)C5—N4—C8—C7−1.3 (15)
C3—N2—C4—C5178.8 (10)Pt1—N4—C8—C7178.9 (8)
C1—N1—C4—N2−0.3 (15)C6—C7—C8—N42.6 (17)
D—H···AD—HH···AD···AD—H···A
C1—H1···N50.952.553.053 (15)114
C8—H8···N60.952.623.138 (15)115
C8—H8···S2i0.952.873.496 (11)124
Table 1

Selected bond lengths (Å)

Pt1—N12.014 (9)
Pt1—N41.999 (8)
Pt1—N51.958 (9)
Pt1—N62.017 (11)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯N50.952.553.053 (15)114
C8—H8⋯N60.952.623.138 (15)115
C8—H8⋯S2i0.952.873.496 (11)124

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Reduced and excited states of (bpym)[PtCl(2)](n)() (bpym = 2,2'-bipyrimidine; n = 1, 2): experiments and DFT calculations.

Authors:  Wolfgang Kaim; Akbey Dogan; Matthias Wanner; Axel Klein; Ioannis Tiritiris; Thomas Schleid; Derk J Stufkens; Theo L Snoeck; Eric J L McInnes; Jan Fiedler; Stanislav Zális
Journal:  Inorg Chem       Date:  2002-08-12       Impact factor: 5.165

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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