Literature DB >> 22590156

Poly[(acetato-κ(2)O,O')aqua-(μ(4)-1H-benzimidazole-5,6-dicarboxyl-ato-κ(6)N(3):O(5),O(5'):O(5),O(6):O(6'))cerium(III)].

Jinhua Chen1, Yuezhu Wang, Chun Zheng, Yifan Luo.   

Abstract

In the title compound, [Ce(C(9)H(4)N(2)O(4))(C(2)H(3)O(2))(H(2)O)](n), the Ce(III) ion is coordinated by five O atoms and one N atom from four 1H-benzimidazole-5,6-dicarboxyl-ato (L) ligands and by two O atoms from an acetate ligand and one aqua ligand, forming a slightly distorted tricapped trigonal-prismatic geometry. The L ligands are bridging, forming a layered polymer parallel to (010). In the crystal, O-H⋯O and N-H⋯O hydrogen bonds connect the polymer layers into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22590156      PMCID: PMC3344394          DOI: 10.1107/S1600536812017503

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 1H-benzimidazole-5,6-dicarboxyl­ate complexes and for related structures, see: Gao et al. (2008 ▶); Yao et al. (2008 ▶); Song, Wang, Hu et al. (2009 ▶); Song, Wang, Li et al. (2009 ▶).

Experimental

Crystal data

[Ce(C9H4N2O4)(C2H3O2)(H2O)] M = 421.32 Triclinic, a = 7.4577 (15) Å b = 9.0399 (19) Å c = 9.792 (2) Å α = 86.895 (2)° β = 86.510 (2)° γ = 84.707 (2)° V = 655.3 (2) Å3 Z = 2 Mo Kα radiation μ = 3.51 mm−1 T = 293 K 0.17 × 0.13 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.584, T max = 0.680 3390 measured reflections 2366 independent reflections 2194 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.054 S = 1.05 2321 reflections 203 parameters 130 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.74 e Å−3 Δρmin = −0.59 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812017503/lh5440sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017503/lh5440Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ce(C9H4N2O4)(C2H3O2)(H2O)]Z = 2
Mr = 421.32F(000) = 406
Triclinic, P1Dx = 2.135 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4577 (15) ÅCell parameters from 2613 reflections
b = 9.0399 (19) Åθ = 2.1–25.2°
c = 9.792 (2) ŵ = 3.51 mm1
α = 86.895 (2)°T = 293 K
β = 86.510 (2)°Block, colorless
γ = 84.707 (2)°0.17 × 0.13 × 0.11 mm
V = 655.3 (2) Å3
Bruker APEXII CCD diffractometer2366 independent reflections
Radiation source: fine-focus sealed tube2194 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
φ and ω scansθmax = 25.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.584, Tmax = 0.680k = −10→7
3390 measured reflectionsl = −11→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.054H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0217P)2 + 1.2938P] where P = (Fo2 + 2Fc2)/3
2321 reflections(Δ/σ)max = 0.004
203 parametersΔρmax = 0.74 e Å3
130 restraintsΔρmin = −0.59 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.The number of independent reflections and the number of reflections used in the refinement are not the same,because we used 'omit -3 50' to enhance the '_diffrn_measured_fraction_theta_full'.
xyzUiso*/Ueq
Ce10.35253 (3)0.35579 (2)0.893484 (19)0.01339 (8)
O60.3692 (4)0.0660 (3)0.8693 (3)0.0242 (6)
O50.5196 (3)0.1955 (3)0.7120 (3)0.0224 (6)
O30.1354 (3)0.5879 (3)0.8893 (3)0.0198 (6)
O40.1202 (3)0.2775 (3)1.0582 (2)0.0181 (5)
O70.6258 (4)0.2197 (3)1.0107 (3)0.0277 (7)
O10.4775 (3)0.5295 (3)0.7017 (3)0.0235 (6)
O20.6399 (3)0.5169 (3)0.8819 (2)0.0169 (5)
N10.1240 (4)0.3026 (3)0.7095 (3)0.0185 (7)
N2−0.1340 (4)0.2436 (4)0.6341 (3)0.0199 (7)
C40.1286 (5)0.3230 (4)0.5663 (3)0.0152 (7)
C5−0.0343 (5)0.2557 (4)0.7418 (4)0.0189 (8)
H5−0.07450.23280.83150.023*
C6−0.0331 (5)0.2865 (4)0.5188 (4)0.0157 (7)
C7−0.0694 (5)0.3027 (4)0.3812 (4)0.0175 (8)
H7−0.18040.28230.35160.021*
C30.2613 (5)0.3736 (4)0.4746 (4)0.0147 (7)
H30.36950.39830.50590.018*
C20.2310 (5)0.3871 (4)0.3353 (3)0.0130 (7)
C80.0645 (5)0.3502 (4)0.2889 (4)0.0141 (7)
C100.4720 (5)0.0728 (4)0.7632 (4)0.0235 (9)
C10.6200 (5)0.5515 (4)0.7549 (3)0.0129 (7)
C9−0.0166 (5)0.6502 (4)0.8595 (3)0.0139 (7)
C110.5451 (11)−0.0663 (6)0.6954 (7)0.084 (3)
H11A0.6391−0.11660.74780.126*
H11B0.5930−0.04130.60470.126*
H11C0.4501−0.13020.69010.126*
H7B0.629 (6)0.133 (3)1.043 (5)0.037 (14)*
H7A0.717 (5)0.259 (4)1.032 (5)0.045 (15)*
H2−0.239 (3)0.212 (5)0.635 (5)0.045 (15)*
U11U22U33U12U13U23
Ce10.01261 (12)0.01670 (12)0.01084 (11)−0.00151 (8)0.00020 (7)−0.00120 (7)
O60.0253 (15)0.0189 (14)0.0274 (16)−0.0020 (11)0.0036 (12)0.0014 (11)
O50.0166 (14)0.0236 (15)0.0257 (15)0.0007 (11)0.0058 (11)−0.0019 (11)
O30.0172 (13)0.0229 (14)0.0189 (14)0.0031 (11)−0.0064 (11)−0.0008 (11)
O40.0163 (13)0.0249 (14)0.0136 (13)−0.0032 (11)0.0028 (10)−0.0062 (11)
O70.0244 (16)0.0199 (15)0.0401 (18)−0.0023 (12)−0.0165 (13)0.0038 (13)
O10.0175 (14)0.0368 (17)0.0175 (14)−0.0121 (12)−0.0027 (11)0.0062 (12)
O20.0178 (13)0.0223 (14)0.0114 (13)−0.0066 (10)−0.0004 (10)0.0007 (10)
N10.0183 (16)0.0247 (17)0.0127 (15)−0.0045 (13)−0.0003 (12)0.0010 (12)
N20.0151 (17)0.0302 (19)0.0146 (16)−0.0066 (14)0.0024 (13)0.0016 (13)
C40.0174 (18)0.0187 (18)0.0090 (17)0.0005 (14)0.0004 (14)−0.0010 (13)
C50.022 (2)0.025 (2)0.0090 (17)−0.0024 (16)0.0026 (14)0.0013 (14)
C60.0124 (18)0.0185 (19)0.0153 (18)−0.0013 (14)0.0044 (14)0.0015 (14)
C70.0126 (18)0.024 (2)0.0168 (19)−0.0046 (15)−0.0010 (14)−0.0016 (15)
C30.0118 (17)0.0191 (19)0.0137 (18)−0.0014 (14)−0.0022 (14)−0.0027 (14)
C20.0127 (17)0.0126 (17)0.0134 (17)0.0004 (13)0.0004 (14)−0.0008 (13)
C80.0107 (17)0.0172 (18)0.0135 (18)0.0037 (13)−0.0006 (13)−0.0003 (14)
C100.025 (2)0.021 (2)0.024 (2)0.0016 (16)0.0007 (17)−0.0019 (16)
C10.0138 (18)0.0101 (16)0.0145 (18)0.0017 (13)−0.0010 (14)−0.0013 (13)
C90.0136 (18)0.0158 (18)0.0127 (18)−0.0054 (14)0.0003 (14)0.0019 (14)
C110.139 (7)0.025 (3)0.079 (5)0.006 (3)0.060 (5)−0.014 (3)
Ce1—O42.422 (2)N2—C51.342 (5)
Ce1—O32.529 (3)N2—C61.376 (4)
Ce1—O2i2.543 (2)N2—H20.857 (10)
Ce1—O52.547 (3)C4—C31.388 (5)
Ce1—O12.568 (2)C4—C61.392 (5)
Ce1—O72.580 (3)C5—H50.9300
Ce1—O62.634 (3)C6—C71.388 (5)
Ce1—N12.646 (3)C7—C81.388 (5)
Ce1—O22.693 (2)C7—H70.9300
Ce1—C102.960 (4)C3—C21.394 (5)
Ce1—C13.002 (3)C3—H30.9300
O6—C101.256 (5)C2—C81.422 (5)
O5—C101.265 (5)C2—C1iii1.505 (5)
O3—C91.262 (4)C8—C9iv1.518 (5)
O4—C9ii1.249 (4)C10—C111.496 (6)
O7—H7B0.830 (18)C1—C2iii1.505 (5)
O7—H7A0.837 (18)C9—O4ii1.249 (4)
O1—C11.248 (4)C9—C8iv1.518 (5)
O2—C11.280 (4)C11—H11A0.9600
O2—Ce1i2.543 (2)C11—H11B0.9600
N1—C51.306 (5)C11—H11C0.9600
N1—C41.403 (5)
O4—Ce1—O380.07 (8)C9—O3—Ce1148.6 (2)
O4—Ce1—O2i68.71 (8)C9ii—O4—Ce1131.1 (2)
O3—Ce1—O2i70.91 (8)Ce1—O7—H7B124 (3)
O4—Ce1—O5125.69 (8)Ce1—O7—H7A126 (3)
O3—Ce1—O5134.99 (8)H7B—O7—H7A110 (3)
O2i—Ce1—O5148.20 (8)C1—O1—Ce197.7 (2)
O4—Ce1—O1153.50 (9)C1—O2—Ce1i139.2 (2)
O3—Ce1—O174.17 (9)C1—O2—Ce190.97 (19)
O2i—Ce1—O1107.59 (8)Ce1i—O2—Ce1109.06 (8)
O5—Ce1—O171.89 (9)C5—N1—C4104.1 (3)
O4—Ce1—O797.53 (9)C5—N1—Ce1123.3 (2)
O3—Ce1—O7144.86 (9)C4—N1—Ce1132.5 (2)
O2i—Ce1—O775.57 (9)C5—N2—C6107.0 (3)
O5—Ce1—O774.44 (9)C5—N2—H2127 (3)
O1—Ce1—O7107.06 (9)C6—N2—H2126 (3)
O4—Ce1—O676.55 (8)C3—C4—C6120.0 (3)
O3—Ce1—O6142.29 (8)C3—C4—N1130.5 (3)
O2i—Ce1—O6125.00 (8)C6—C4—N1109.5 (3)
O5—Ce1—O650.21 (8)N1—C5—N2114.1 (3)
O1—Ce1—O6121.56 (9)N1—C5—H5122.9
O7—Ce1—O668.14 (9)N2—C5—H5122.9
O4—Ce1—N184.39 (9)N2—C6—C7132.6 (3)
O3—Ce1—N176.65 (9)N2—C6—C4105.3 (3)
O2i—Ce1—N1140.60 (9)C7—C6—C4122.0 (3)
O5—Ce1—N171.10 (9)C8—C7—C6118.1 (3)
O1—Ce1—N183.75 (9)C8—C7—H7121.0
O7—Ce1—N1138.34 (10)C6—C7—H7121.0
O6—Ce1—N172.00 (9)C4—C3—C2119.4 (3)
O4—Ce1—O2139.30 (8)C4—C3—H3120.3
O3—Ce1—O291.88 (8)C2—C3—H3120.3
O2i—Ce1—O270.94 (9)C3—C2—C8119.8 (3)
O5—Ce1—O287.74 (8)C3—C2—C1iii115.2 (3)
O1—Ce1—O249.17 (8)C8—C2—C1iii124.9 (3)
O7—Ce1—O267.05 (8)C7—C8—C2120.7 (3)
O6—Ce1—O2124.89 (8)C7—C8—C9iv113.4 (3)
N1—Ce1—O2132.72 (8)C2—C8—C9iv125.8 (3)
O4—Ce1—C10101.21 (10)O6—C10—O5121.6 (4)
O3—Ce1—C10146.18 (10)O6—C10—C11120.3 (4)
O2i—Ce1—C10141.48 (9)O5—C10—C11118.1 (4)
O5—Ce1—C1025.14 (10)O6—C10—Ce162.8 (2)
O1—Ce1—C1096.82 (10)O5—C10—Ce158.8 (2)
O7—Ce1—C1068.91 (10)C11—C10—Ce1176.0 (4)
O6—Ce1—C1025.08 (9)O1—C1—O2120.3 (3)
N1—Ce1—C1069.91 (10)O1—C1—C2iii118.3 (3)
O2—Ce1—C10106.88 (10)O2—C1—C2iii121.4 (3)
O4—Ce1—C1158.49 (9)O1—C1—Ce157.99 (18)
O3—Ce1—C185.24 (9)O2—C1—Ce163.79 (17)
O2i—Ce1—C191.70 (9)C2iii—C1—Ce1164.7 (2)
O5—Ce1—C175.70 (9)O4ii—C9—O3123.6 (3)
O1—Ce1—C124.32 (9)O4ii—C9—C8iv119.0 (3)
O7—Ce1—C185.50 (9)O3—C9—C8iv117.0 (3)
O6—Ce1—C1123.78 (9)C10—C11—H11A109.5
N1—Ce1—C1107.48 (9)C10—C11—H11B109.5
O2—Ce1—C125.24 (8)H11A—C11—H11B109.5
C10—Ce1—C199.75 (10)C10—C11—H11C109.5
C10—O6—Ce192.2 (2)H11A—C11—H11C109.5
C10—O5—Ce196.0 (2)H11B—C11—H11C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···O5v0.86 (3)1.93 (3)2.716 (4)153 (4)
O7—H7A···O3i0.84 (4)2.05 (4)2.850 (4)158 (3)
O7—H7B···O6vi0.83 (3)1.95 (3)2.777 (4)176 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O5i0.86 (3)1.93 (3)2.716 (4)153 (4)
O7—H7A⋯O3ii0.84 (4)2.05 (4)2.850 (4)158 (3)
O7—H7B⋯O6iii0.83 (3)1.95 (3)2.777 (4)176 (6)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Penta-aqua-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)cobalt(II) penta-hydrate.

Authors:  Wen-Dong Song; Hao Wang; Shi-Jie Li; Pei-Wen Qin; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

3.  catena-Poly[[diaqua-(1,10-phenanthroline-κN,N')nickel(II)]-μ-1H-benzimidazole-5,6-dicarboxyl-ato-κN:O].

Authors:  Wen-Dong Song; Hao Wang; Shi-Wei Hu; Pei-Wen Qin; Shi-Jie Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

4.  Penta-aqua-(1H-benzimidazole-5,6-di-carboxyl-ato-κN)copper(II) penta-hydrate.

Authors:  Qian Gao; Wei-Hong Gao; Chao-Yan Zhang; Ya-Bo Xie
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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