| Literature DB >> 22590107 |
Abstract
The Co(II) ion in the title mononuclear compound, [Co(C(11)H(7)N(6))(2)(H(2)O)(2)]·2CH(3)OH, is located on an inversion center and is six-coordinated in a distorted octa-hedral geometry defined by four N atoms from two deprotonated 5-(pyrazin-2-yl-κN)-3-(pyridin-4-yl)-1H-1,2,4-triazol-1-ide (ppt) ligands and two water mol-ecules. In the crystal, the complex mol-ecules and lattice methanol mol-ecules are linked via O-H⋯N and O-H⋯O hydrogen bonds, generating a two-dimensional supra-molecular network parallel to (001). π-π inter-actions between the triazole and pyrazine rings and between the pyridine rings are present [centroid-centroid distances = 3.686 (3) and 3.929 (4) Å, respectively].Entities:
Year: 2012 PMID: 22590107 PMCID: PMC3344341 DOI: 10.1107/S160053681201495X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C11H7N6)2(H2O)2]·2CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1325 reflections |
| θ = 2.5–22.3° | |
| µ = 0.71 mm−1 | |
| β = 95.418 (14)° | Block, yellow |
| 0.36 × 0.22 × 0.10 mm | |
| Bruker APEX CCD diffractometer | 2307 independent reflections |
| Radiation source: fine-focus sealed tube | 1685 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 6377 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2307 reflections | (Δ/σ)max < 0.001 |
| 189 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.0000 | 0.0000 | 0.0000 | 0.03537 (19) | |
| O1 | −0.09917 (17) | 0.1407 (3) | 0.08265 (12) | 0.0466 (5) | |
| H1A | −0.1489 | 0.0789 | 0.1075 | 0.070* | |
| H1B | −0.1214 | 0.2496 | 0.0663 | 0.070* | |
| O2 | 0.7363 (2) | −0.0266 (4) | 0.16227 (19) | 0.0799 (8) | |
| H2 | 0.6906 | −0.1150 | 0.1557 | 0.120* | |
| N1 | −0.06613 (19) | 0.1782 (3) | −0.09975 (14) | 0.0354 (6) | |
| N2 | −0.1322 (2) | 0.4390 (4) | −0.22262 (17) | 0.0549 (8) | |
| N3 | 0.1212 (2) | 0.2174 (3) | 0.00719 (14) | 0.0375 (6) | |
| N4 | 0.2220 (2) | 0.2651 (3) | 0.05380 (15) | 0.0414 (6) | |
| N5 | 0.1735 (2) | 0.4979 (3) | −0.03782 (14) | 0.0364 (5) | |
| N6 | 0.5474 (3) | 0.7349 (5) | 0.1316 (2) | 0.0752 (10) | |
| C1 | −0.1573 (3) | 0.1507 (4) | −0.15428 (18) | 0.0438 (8) | |
| H1 | −0.2012 | 0.0415 | −0.1512 | 0.053* | |
| C2 | −0.1893 (3) | 0.2791 (4) | −0.2156 (2) | 0.0527 (9) | |
| H2A | −0.2535 | 0.2530 | −0.2536 | 0.063* | |
| C3 | −0.0408 (3) | 0.4681 (4) | −0.16709 (19) | 0.0454 (8) | |
| H3 | 0.0009 | 0.5797 | −0.1693 | 0.055* | |
| C4 | −0.0058 (2) | 0.3391 (4) | −0.10655 (17) | 0.0353 (7) | |
| C5 | 0.0967 (2) | 0.3570 (4) | −0.04610 (17) | 0.0333 (7) | |
| C6 | 0.2498 (2) | 0.4331 (4) | 0.02493 (18) | 0.0371 (7) | |
| C7 | 0.3528 (3) | 0.5369 (4) | 0.06056 (19) | 0.0422 (8) | |
| C8 | 0.4329 (3) | 0.4564 (5) | 0.1186 (2) | 0.0639 (10) | |
| H8 | 0.4235 | 0.3328 | 0.1354 | 0.077* | |
| C9 | 0.5269 (3) | 0.5597 (6) | 0.1513 (3) | 0.0807 (13) | |
| H9 | 0.5801 | 0.5018 | 0.1903 | 0.097* | |
| C10 | 0.4694 (4) | 0.8116 (6) | 0.0775 (3) | 0.0824 (13) | |
| H10 | 0.4802 | 0.9367 | 0.0636 | 0.099* | |
| C11 | 0.3724 (3) | 0.7207 (5) | 0.0397 (2) | 0.0663 (11) | |
| H11 | 0.3211 | 0.7826 | 0.0008 | 0.080* | |
| C12 | 0.6909 (4) | 0.1064 (7) | 0.2107 (3) | 0.1041 (16) | |
| H12A | 0.6849 | 0.0563 | 0.2654 | 0.156* | |
| H12B | 0.6145 | 0.1422 | 0.1863 | 0.156* | |
| H12C | 0.7413 | 0.2143 | 0.2145 | 0.156* |
| Co1 | 0.0389 (3) | 0.0217 (3) | 0.0427 (3) | −0.0062 (2) | −0.0105 (2) | 0.0049 (2) |
| O1 | 0.0551 (13) | 0.0266 (11) | 0.0577 (14) | −0.0033 (9) | 0.0037 (11) | 0.0067 (9) |
| O2 | 0.0714 (18) | 0.0657 (18) | 0.104 (2) | −0.0281 (14) | 0.0175 (17) | −0.0126 (16) |
| N1 | 0.0378 (13) | 0.0258 (12) | 0.0405 (14) | −0.0034 (11) | −0.0076 (11) | 0.0018 (10) |
| N2 | 0.0617 (18) | 0.0399 (15) | 0.0577 (18) | −0.0012 (13) | −0.0231 (15) | 0.0110 (13) |
| N3 | 0.0373 (13) | 0.0268 (12) | 0.0457 (14) | −0.0045 (10) | −0.0106 (11) | 0.0061 (11) |
| N4 | 0.0371 (13) | 0.0325 (13) | 0.0516 (15) | −0.0061 (11) | −0.0122 (12) | 0.0037 (12) |
| N5 | 0.0380 (13) | 0.0237 (12) | 0.0460 (14) | −0.0063 (11) | −0.0038 (11) | 0.0025 (11) |
| N6 | 0.060 (2) | 0.064 (2) | 0.096 (2) | −0.0251 (17) | −0.0236 (18) | 0.0072 (19) |
| C1 | 0.0445 (17) | 0.0324 (16) | 0.0510 (19) | −0.0083 (14) | −0.0149 (15) | 0.0006 (14) |
| C2 | 0.054 (2) | 0.0427 (19) | 0.057 (2) | −0.0076 (16) | −0.0208 (17) | 0.0035 (16) |
| C3 | 0.0520 (19) | 0.0308 (17) | 0.0499 (19) | −0.0047 (14) | −0.0138 (16) | 0.0088 (14) |
| C4 | 0.0387 (16) | 0.0270 (14) | 0.0385 (17) | 0.0004 (12) | −0.0058 (13) | 0.0007 (13) |
| C5 | 0.0351 (15) | 0.0249 (14) | 0.0383 (17) | −0.0041 (12) | −0.0053 (13) | 0.0008 (12) |
| C6 | 0.0376 (16) | 0.0281 (14) | 0.0437 (18) | −0.0043 (12) | −0.0052 (14) | 0.0010 (13) |
| C7 | 0.0377 (17) | 0.0366 (18) | 0.0510 (19) | −0.0062 (13) | −0.0030 (14) | −0.0005 (14) |
| C8 | 0.050 (2) | 0.049 (2) | 0.087 (3) | −0.0112 (16) | −0.021 (2) | 0.0122 (19) |
| C9 | 0.056 (2) | 0.064 (3) | 0.113 (3) | −0.0139 (19) | −0.038 (2) | 0.009 (2) |
| C10 | 0.086 (3) | 0.060 (3) | 0.095 (3) | −0.040 (2) | −0.022 (3) | 0.020 (2) |
| C11 | 0.065 (2) | 0.052 (2) | 0.076 (2) | −0.0246 (18) | −0.024 (2) | 0.0138 (19) |
| C12 | 0.085 (3) | 0.096 (4) | 0.134 (4) | −0.010 (3) | 0.023 (3) | −0.029 (3) |
| Co1—N3i | 2.076 (2) | N6—C9 | 1.314 (5) |
| Co1—N3 | 2.076 (2) | C1—C2 | 1.370 (4) |
| Co1—O1i | 2.087 (2) | C1—H1 | 0.9300 |
| Co1—O1 | 2.087 (2) | C2—H2A | 0.9300 |
| Co1—N1i | 2.130 (2) | C3—C4 | 1.372 (4) |
| Co1—N1 | 2.130 (2) | C3—H3 | 0.9300 |
| O1—H1A | 0.8502 | C4—C5 | 1.460 (4) |
| O1—H1B | 0.8501 | C6—C7 | 1.464 (4) |
| O2—C12 | 1.361 (5) | C7—C8 | 1.373 (4) |
| O2—H2 | 0.8200 | C7—C11 | 1.375 (4) |
| N1—C1 | 1.315 (3) | C8—C9 | 1.369 (5) |
| N1—C4 | 1.348 (3) | C8—H8 | 0.9300 |
| N2—C2 | 1.324 (4) | C9—H9 | 0.9300 |
| N2—C3 | 1.328 (4) | C10—C11 | 1.378 (5) |
| N3—C5 | 1.326 (3) | C10—H10 | 0.9300 |
| N3—N4 | 1.361 (3) | C11—H11 | 0.9300 |
| N4—C6 | 1.333 (4) | C12—H12A | 0.9600 |
| N5—C5 | 1.332 (3) | C12—H12B | 0.9600 |
| N5—C6 | 1.354 (3) | C12—H12C | 0.9600 |
| N6—C10 | 1.307 (5) | ||
| N3i—Co1—N3 | 180.00 (12) | C1—C2—H2A | 118.8 |
| N3i—Co1—O1i | 90.47 (10) | N2—C3—C4 | 122.3 (3) |
| N3—Co1—O1i | 89.53 (10) | N2—C3—H3 | 118.9 |
| N3i—Co1—O1 | 89.53 (10) | C4—C3—H3 | 118.9 |
| N3—Co1—O1 | 90.47 (10) | N1—C4—C3 | 120.6 (3) |
| O1i—Co1—O1 | 180.00 (14) | N1—C4—C5 | 114.0 (2) |
| N3i—Co1—N1i | 77.67 (9) | C3—C4—C5 | 125.3 (3) |
| N3—Co1—N1i | 102.33 (9) | N3—C5—N5 | 113.7 (2) |
| O1i—Co1—N1i | 91.11 (10) | N3—C5—C4 | 118.3 (2) |
| O1—Co1—N1i | 88.89 (10) | N5—C5—C4 | 128.0 (2) |
| N3i—Co1—N1 | 102.33 (9) | N4—C6—N5 | 114.1 (2) |
| N3—Co1—N1 | 77.67 (9) | N4—C6—C7 | 121.8 (3) |
| O1i—Co1—N1 | 88.89 (10) | N5—C6—C7 | 124.2 (2) |
| O1—Co1—N1 | 91.11 (10) | C8—C7—C11 | 116.7 (3) |
| N1i—Co1—N1 | 180.00 (17) | C8—C7—C6 | 121.3 (3) |
| Co1—O1—H1A | 118.9 | C11—C7—C6 | 122.0 (3) |
| Co1—O1—H1B | 113.9 | C9—C8—C7 | 119.3 (3) |
| H1A—O1—H1B | 115.1 | C9—C8—H8 | 120.4 |
| C12—O2—H2 | 109.5 | C7—C8—H8 | 120.4 |
| C1—N1—C4 | 117.0 (2) | N6—C9—C8 | 124.7 (4) |
| C1—N1—Co1 | 128.27 (19) | N6—C9—H9 | 117.6 |
| C4—N1—Co1 | 114.77 (18) | C8—C9—H9 | 117.6 |
| C2—N2—C3 | 116.2 (3) | N6—C10—C11 | 124.8 (4) |
| C5—N3—N4 | 106.7 (2) | N6—C10—H10 | 117.6 |
| C5—N3—Co1 | 115.07 (17) | C11—C10—H10 | 117.6 |
| N4—N3—Co1 | 138.23 (18) | C7—C11—C10 | 118.9 (3) |
| C6—N4—N3 | 104.4 (2) | C7—C11—H11 | 120.6 |
| C5—N5—C6 | 101.1 (2) | C10—C11—H11 | 120.6 |
| C10—N6—C9 | 115.5 (3) | O2—C12—H12A | 109.5 |
| N1—C1—C2 | 121.6 (3) | O2—C12—H12B | 109.5 |
| N1—C1—H1 | 119.2 | H12A—C12—H12B | 109.5 |
| C2—C1—H1 | 119.2 | O2—C12—H12C | 109.5 |
| N2—C2—C1 | 122.3 (3) | H12A—C12—H12C | 109.5 |
| N2—C2—H2A | 118.8 | H12B—C12—H12C | 109.5 |
| N3i—Co1—N1—C1 | −3.1 (3) | N2—C3—C4—C5 | 176.9 (3) |
| N3—Co1—N1—C1 | 176.9 (3) | N4—N3—C5—N5 | −1.0 (3) |
| O1i—Co1—N1—C1 | 87.1 (3) | Co1—N3—C5—N5 | 177.47 (18) |
| O1—Co1—N1—C1 | −92.9 (3) | N4—N3—C5—C4 | 177.7 (2) |
| N3i—Co1—N1—C4 | 176.62 (19) | Co1—N3—C5—C4 | −3.9 (3) |
| N3—Co1—N1—C4 | −3.38 (19) | C6—N5—C5—N3 | 0.8 (3) |
| O1i—Co1—N1—C4 | −93.1 (2) | C6—N5—C5—C4 | −177.7 (3) |
| O1—Co1—N1—C4 | 86.9 (2) | N1—C4—C5—N3 | 0.9 (4) |
| O1i—Co1—N3—C5 | 92.8 (2) | C3—C4—C5—N3 | −178.0 (3) |
| O1—Co1—N3—C5 | −87.2 (2) | N1—C4—C5—N5 | 179.4 (3) |
| N1i—Co1—N3—C5 | −176.2 (2) | C3—C4—C5—N5 | 0.4 (5) |
| N1—Co1—N3—C5 | 3.8 (2) | N3—N4—C6—N5 | −0.2 (3) |
| O1i—Co1—N3—N4 | −89.4 (3) | N3—N4—C6—C7 | 178.5 (3) |
| O1—Co1—N3—N4 | 90.6 (3) | C5—N5—C6—N4 | −0.4 (3) |
| N1i—Co1—N3—N4 | 1.7 (3) | C5—N5—C6—C7 | −179.0 (3) |
| N1—Co1—N3—N4 | −178.3 (3) | N4—C6—C7—C8 | 7.8 (5) |
| C5—N3—N4—C6 | 0.7 (3) | N5—C6—C7—C8 | −173.7 (3) |
| Co1—N3—N4—C6 | −177.3 (2) | N4—C6—C7—C11 | −170.2 (3) |
| C4—N1—C1—C2 | 0.4 (4) | N5—C6—C7—C11 | 8.3 (5) |
| Co1—N1—C1—C2 | −179.9 (2) | C11—C7—C8—C9 | −0.8 (6) |
| C3—N2—C2—C1 | 0.6 (5) | C6—C7—C8—C9 | −178.9 (4) |
| N1—C1—C2—N2 | −1.3 (5) | C10—N6—C9—C8 | 1.1 (7) |
| C2—N2—C3—C4 | 1.1 (5) | C7—C8—C9—N6 | 0.2 (7) |
| C1—N1—C4—C3 | 1.2 (4) | C9—N6—C10—C11 | −1.9 (7) |
| Co1—N1—C4—C3 | −178.6 (2) | C8—C7—C11—C10 | 0.0 (6) |
| C1—N1—C4—C5 | −177.8 (3) | C6—C7—C11—C10 | 178.1 (3) |
| Co1—N1—C4—C5 | 2.4 (3) | N6—C10—C11—C7 | 1.5 (7) |
| N2—C3—C4—N1 | −2.0 (5) |
| H··· | ||||
| O2—H2···N6ii | 0.82 | 1.97 | 2.760 (4) | 163 |
| O1—H1 | 0.85 | 1.94 | 2.785 (3) | 176 |
| O1—H1 | 0.85 | 1.81 | 2.660 (3) | 173 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯N6i | 0.82 | 1.97 | 2.760 (4) | 163 |
| O1—H1 | 0.85 | 1.94 | 2.785 (3) | 176 |
| O1—H1 | 0.85 | 1.81 | 2.660 (3) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .