Literature DB >> 22590107

Diaqua-bis-[5-(pyrazin-2-yl-κN(1))-3-(pyridin-4-yl)-1H-1,2,4-triazol-1-ido-κN(1)]cobalt(II) methanol disolvate.

Yan Bi1, Na Wu, Jing Chen.   

Abstract

The Co(II) ion in the title mononuclear compound, [Co(C(11)H(7)N(6))(2)(H(2)O)(2)]·2CH(3)OH, is located on an inversion center and is six-coordinated in a distorted octa-hedral geometry defined by four N atoms from two deprotonated 5-(pyrazin-2-yl-κN)-3-(pyridin-4-yl)-1H-1,2,4-triazol-1-ide (ppt) ligands and two water mol-ecules. In the crystal, the complex mol-ecules and lattice methanol mol-ecules are linked via O-H⋯N and O-H⋯O hydrogen bonds, generating a two-dimensional supra-molecular network parallel to (001). π-π inter-actions between the triazole and pyrazine rings and between the pyridine rings are present [centroid-centroid distances = 3.686 (3) and 3.929 (4) Å, respectively].

Entities:  

Year:  2012        PMID: 22590107      PMCID: PMC3344341          DOI: 10.1107/S160053681201495X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination complexes based on N-involved polydentate ligands, see: Guo et al. (2010 ▶); Ha (2011 ▶); Sun et al. (2011 ▶); Tang et al. (2011 ▶); Yang et al. (2010 ▶). For related structures based on 5-(pyrazin-2-yl)-3-(pyridin-4-yl)-1H-1,2,4-triazole, see: Liu et al. (2009 ▶).

Experimental

Crystal data

[Co(C11H7N6)2(H2O)2]·2CH4O M = 605.50 Monoclinic, a = 11.462 (9) Å b = 7.121 (5) Å c = 16.116 (12) Å β = 95.418 (14)° V = 1309.6 (17) Å3 Z = 2 Mo Kα radiation μ = 0.71 mm−1 T = 296 K 0.36 × 0.22 × 0.10 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.783, T max = 0.932 6377 measured reflections 2307 independent reflections 1685 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.104 S = 1.03 2307 reflections 189 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.31 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681201495X/hy2533sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201495X/hy2533Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C11H7N6)2(H2O)2]·2CH4OF(000) = 626
Mr = 605.50Dx = 1.536 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1325 reflections
a = 11.462 (9) Åθ = 2.5–22.3°
b = 7.121 (5) ŵ = 0.71 mm1
c = 16.116 (12) ÅT = 296 K
β = 95.418 (14)°Block, yellow
V = 1309.6 (17) Å30.36 × 0.22 × 0.10 mm
Z = 2
Bruker APEX CCD diffractometer2307 independent reflections
Radiation source: fine-focus sealed tube1685 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
φ and ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −13→13
Tmin = 0.783, Tmax = 0.932k = −8→7
6377 measured reflectionsl = −16→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0486P)2 + 0.3583P] where P = (Fo2 + 2Fc2)/3
2307 reflections(Δ/σ)max < 0.001
189 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.00000.03537 (19)
O1−0.09917 (17)0.1407 (3)0.08265 (12)0.0466 (5)
H1A−0.14890.07890.10750.070*
H1B−0.12140.24960.06630.070*
O20.7363 (2)−0.0266 (4)0.16227 (19)0.0799 (8)
H20.6906−0.11500.15570.120*
N1−0.06613 (19)0.1782 (3)−0.09975 (14)0.0354 (6)
N2−0.1322 (2)0.4390 (4)−0.22262 (17)0.0549 (8)
N30.1212 (2)0.2174 (3)0.00719 (14)0.0375 (6)
N40.2220 (2)0.2651 (3)0.05380 (15)0.0414 (6)
N50.1735 (2)0.4979 (3)−0.03782 (14)0.0364 (5)
N60.5474 (3)0.7349 (5)0.1316 (2)0.0752 (10)
C1−0.1573 (3)0.1507 (4)−0.15428 (18)0.0438 (8)
H1−0.20120.0415−0.15120.053*
C2−0.1893 (3)0.2791 (4)−0.2156 (2)0.0527 (9)
H2A−0.25350.2530−0.25360.063*
C3−0.0408 (3)0.4681 (4)−0.16709 (19)0.0454 (8)
H30.00090.5797−0.16930.055*
C4−0.0058 (2)0.3391 (4)−0.10655 (17)0.0353 (7)
C50.0967 (2)0.3570 (4)−0.04610 (17)0.0333 (7)
C60.2498 (2)0.4331 (4)0.02493 (18)0.0371 (7)
C70.3528 (3)0.5369 (4)0.06056 (19)0.0422 (8)
C80.4329 (3)0.4564 (5)0.1186 (2)0.0639 (10)
H80.42350.33280.13540.077*
C90.5269 (3)0.5597 (6)0.1513 (3)0.0807 (13)
H90.58010.50180.19030.097*
C100.4694 (4)0.8116 (6)0.0775 (3)0.0824 (13)
H100.48020.93670.06360.099*
C110.3724 (3)0.7207 (5)0.0397 (2)0.0663 (11)
H110.32110.78260.00080.080*
C120.6909 (4)0.1064 (7)0.2107 (3)0.1041 (16)
H12A0.68490.05630.26540.156*
H12B0.61450.14220.18630.156*
H12C0.74130.21430.21450.156*
U11U22U33U12U13U23
Co10.0389 (3)0.0217 (3)0.0427 (3)−0.0062 (2)−0.0105 (2)0.0049 (2)
O10.0551 (13)0.0266 (11)0.0577 (14)−0.0033 (9)0.0037 (11)0.0067 (9)
O20.0714 (18)0.0657 (18)0.104 (2)−0.0281 (14)0.0175 (17)−0.0126 (16)
N10.0378 (13)0.0258 (12)0.0405 (14)−0.0034 (11)−0.0076 (11)0.0018 (10)
N20.0617 (18)0.0399 (15)0.0577 (18)−0.0012 (13)−0.0231 (15)0.0110 (13)
N30.0373 (13)0.0268 (12)0.0457 (14)−0.0045 (10)−0.0106 (11)0.0061 (11)
N40.0371 (13)0.0325 (13)0.0516 (15)−0.0061 (11)−0.0122 (12)0.0037 (12)
N50.0380 (13)0.0237 (12)0.0460 (14)−0.0063 (11)−0.0038 (11)0.0025 (11)
N60.060 (2)0.064 (2)0.096 (2)−0.0251 (17)−0.0236 (18)0.0072 (19)
C10.0445 (17)0.0324 (16)0.0510 (19)−0.0083 (14)−0.0149 (15)0.0006 (14)
C20.054 (2)0.0427 (19)0.057 (2)−0.0076 (16)−0.0208 (17)0.0035 (16)
C30.0520 (19)0.0308 (17)0.0499 (19)−0.0047 (14)−0.0138 (16)0.0088 (14)
C40.0387 (16)0.0270 (14)0.0385 (17)0.0004 (12)−0.0058 (13)0.0007 (13)
C50.0351 (15)0.0249 (14)0.0383 (17)−0.0041 (12)−0.0053 (13)0.0008 (12)
C60.0376 (16)0.0281 (14)0.0437 (18)−0.0043 (12)−0.0052 (14)0.0010 (13)
C70.0377 (17)0.0366 (18)0.0510 (19)−0.0062 (13)−0.0030 (14)−0.0005 (14)
C80.050 (2)0.049 (2)0.087 (3)−0.0112 (16)−0.021 (2)0.0122 (19)
C90.056 (2)0.064 (3)0.113 (3)−0.0139 (19)−0.038 (2)0.009 (2)
C100.086 (3)0.060 (3)0.095 (3)−0.040 (2)−0.022 (3)0.020 (2)
C110.065 (2)0.052 (2)0.076 (2)−0.0246 (18)−0.024 (2)0.0138 (19)
C120.085 (3)0.096 (4)0.134 (4)−0.010 (3)0.023 (3)−0.029 (3)
Co1—N3i2.076 (2)N6—C91.314 (5)
Co1—N32.076 (2)C1—C21.370 (4)
Co1—O1i2.087 (2)C1—H10.9300
Co1—O12.087 (2)C2—H2A0.9300
Co1—N1i2.130 (2)C3—C41.372 (4)
Co1—N12.130 (2)C3—H30.9300
O1—H1A0.8502C4—C51.460 (4)
O1—H1B0.8501C6—C71.464 (4)
O2—C121.361 (5)C7—C81.373 (4)
O2—H20.8200C7—C111.375 (4)
N1—C11.315 (3)C8—C91.369 (5)
N1—C41.348 (3)C8—H80.9300
N2—C21.324 (4)C9—H90.9300
N2—C31.328 (4)C10—C111.378 (5)
N3—C51.326 (3)C10—H100.9300
N3—N41.361 (3)C11—H110.9300
N4—C61.333 (4)C12—H12A0.9600
N5—C51.332 (3)C12—H12B0.9600
N5—C61.354 (3)C12—H12C0.9600
N6—C101.307 (5)
N3i—Co1—N3180.00 (12)C1—C2—H2A118.8
N3i—Co1—O1i90.47 (10)N2—C3—C4122.3 (3)
N3—Co1—O1i89.53 (10)N2—C3—H3118.9
N3i—Co1—O189.53 (10)C4—C3—H3118.9
N3—Co1—O190.47 (10)N1—C4—C3120.6 (3)
O1i—Co1—O1180.00 (14)N1—C4—C5114.0 (2)
N3i—Co1—N1i77.67 (9)C3—C4—C5125.3 (3)
N3—Co1—N1i102.33 (9)N3—C5—N5113.7 (2)
O1i—Co1—N1i91.11 (10)N3—C5—C4118.3 (2)
O1—Co1—N1i88.89 (10)N5—C5—C4128.0 (2)
N3i—Co1—N1102.33 (9)N4—C6—N5114.1 (2)
N3—Co1—N177.67 (9)N4—C6—C7121.8 (3)
O1i—Co1—N188.89 (10)N5—C6—C7124.2 (2)
O1—Co1—N191.11 (10)C8—C7—C11116.7 (3)
N1i—Co1—N1180.00 (17)C8—C7—C6121.3 (3)
Co1—O1—H1A118.9C11—C7—C6122.0 (3)
Co1—O1—H1B113.9C9—C8—C7119.3 (3)
H1A—O1—H1B115.1C9—C8—H8120.4
C12—O2—H2109.5C7—C8—H8120.4
C1—N1—C4117.0 (2)N6—C9—C8124.7 (4)
C1—N1—Co1128.27 (19)N6—C9—H9117.6
C4—N1—Co1114.77 (18)C8—C9—H9117.6
C2—N2—C3116.2 (3)N6—C10—C11124.8 (4)
C5—N3—N4106.7 (2)N6—C10—H10117.6
C5—N3—Co1115.07 (17)C11—C10—H10117.6
N4—N3—Co1138.23 (18)C7—C11—C10118.9 (3)
C6—N4—N3104.4 (2)C7—C11—H11120.6
C5—N5—C6101.1 (2)C10—C11—H11120.6
C10—N6—C9115.5 (3)O2—C12—H12A109.5
N1—C1—C2121.6 (3)O2—C12—H12B109.5
N1—C1—H1119.2H12A—C12—H12B109.5
C2—C1—H1119.2O2—C12—H12C109.5
N2—C2—C1122.3 (3)H12A—C12—H12C109.5
N2—C2—H2A118.8H12B—C12—H12C109.5
N3i—Co1—N1—C1−3.1 (3)N2—C3—C4—C5176.9 (3)
N3—Co1—N1—C1176.9 (3)N4—N3—C5—N5−1.0 (3)
O1i—Co1—N1—C187.1 (3)Co1—N3—C5—N5177.47 (18)
O1—Co1—N1—C1−92.9 (3)N4—N3—C5—C4177.7 (2)
N3i—Co1—N1—C4176.62 (19)Co1—N3—C5—C4−3.9 (3)
N3—Co1—N1—C4−3.38 (19)C6—N5—C5—N30.8 (3)
O1i—Co1—N1—C4−93.1 (2)C6—N5—C5—C4−177.7 (3)
O1—Co1—N1—C486.9 (2)N1—C4—C5—N30.9 (4)
O1i—Co1—N3—C592.8 (2)C3—C4—C5—N3−178.0 (3)
O1—Co1—N3—C5−87.2 (2)N1—C4—C5—N5179.4 (3)
N1i—Co1—N3—C5−176.2 (2)C3—C4—C5—N50.4 (5)
N1—Co1—N3—C53.8 (2)N3—N4—C6—N5−0.2 (3)
O1i—Co1—N3—N4−89.4 (3)N3—N4—C6—C7178.5 (3)
O1—Co1—N3—N490.6 (3)C5—N5—C6—N4−0.4 (3)
N1i—Co1—N3—N41.7 (3)C5—N5—C6—C7−179.0 (3)
N1—Co1—N3—N4−178.3 (3)N4—C6—C7—C87.8 (5)
C5—N3—N4—C60.7 (3)N5—C6—C7—C8−173.7 (3)
Co1—N3—N4—C6−177.3 (2)N4—C6—C7—C11−170.2 (3)
C4—N1—C1—C20.4 (4)N5—C6—C7—C118.3 (5)
Co1—N1—C1—C2−179.9 (2)C11—C7—C8—C9−0.8 (6)
C3—N2—C2—C10.6 (5)C6—C7—C8—C9−178.9 (4)
N1—C1—C2—N2−1.3 (5)C10—N6—C9—C81.1 (7)
C2—N2—C3—C41.1 (5)C7—C8—C9—N60.2 (7)
C1—N1—C4—C31.2 (4)C9—N6—C10—C11−1.9 (7)
Co1—N1—C4—C3−178.6 (2)C8—C7—C11—C100.0 (6)
C1—N1—C4—C5−177.8 (3)C6—C7—C11—C10178.1 (3)
Co1—N1—C4—C52.4 (3)N6—C10—C11—C71.5 (7)
N2—C3—C4—N1−2.0 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···N6ii0.821.972.760 (4)163
O1—H1B···N5iii0.851.942.785 (3)176
O1—H1A···O2iv0.851.812.660 (3)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N6i0.821.972.760 (4)163
O1—H1B⋯N5ii0.851.942.785 (3)176
O1—H1A⋯O2iii0.851.812.660 (3)173

Symmetry codes: (i) ; (ii) ; (iii) .

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