Literature DB >> 22590086

Tetra-kis[μ(3)-4-nitro-N-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamidato]tetra-kis-[methano-lsodium(I)].

Guo-Jie Yin1, Qing Zhang, Dong Li.   

Abstract

In the title compound, [Na(4)(C(15)H(9)N(4)O(4))(4)(CH(3)OH)(4)], the N(3)O(3) environment around the Na(+) ion is distorted octa-hedral. In the unit cell, four Na(+) ions are bridged by four Schiff base anions, leading to a tetra-nuclear complex with -4 symmetry. O-H⋯N hydrogen bonds between the methanol mol-ecule and the Schiff base anion stabilize the structural set-up.

Entities:  

Year:  2012        PMID: 22590086      PMCID: PMC3344320          DOI: 10.1107/S1600536812014791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of 2-amino-5-phenyl-1,3,4-oxadiazole, see: Gibson (1962 ▶) and of N-(5-phenyl-1,3,4-oxadiazol-2-yl)-p-nitro­benzamide, see: Zhang et al. (2009 ▶). Organic ligands based on oxadiazole or carboxyl­ate groups have both good coordination ability and diverse coordination modes, see: Hu et al. (2008 ▶).

Experimental

Crystal data

[Na4(C15H9N4O4)4(CH4O)4] M = 1457.18 Tetragonal, a = 15.6635 (2) Å c = 27.1833 (6) Å V = 6669.29 (18) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.934, T max = 1.000 15582 measured reflections 3413 independent reflections 2653 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.106 S = 1.02 3413 reflections 239 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812014791/hp2035sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812014791/hp2035Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na4(C15H9N4O4)4(CH4O)4]Dx = 1.451 Mg m3
Mr = 1457.18Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 5181 reflections
a = 15.6635 (2) Åθ = 3.0–29.0°
c = 27.1833 (6) ŵ = 0.13 mm1
V = 6669.29 (18) Å3T = 293 K
Z = 4Prismatic, yellow
F(000) = 30080.30 × 0.20 × 0.20 mm
Bruker SMART CCD area-detector diffractometer3413 independent reflections
Radiation source: fine-focus sealed tube2653 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
phi and ω scansθmax = 26.4°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −17→19
Tmin = 0.934, Tmax = 1.000k = −19→19
15582 measured reflectionsl = −33→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0488P)2 + 3.8193P] where P = (Fo2 + 2Fc2)/3
3413 reflections(Δ/σ)max < 0.001
239 parametersΔρmax = 0.22 e Å3
2 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.83748 (4)0.26324 (4)0.11911 (2)0.03798 (19)
O10.85910 (8)0.13991 (7)0.16902 (4)0.0404 (3)
O20.90153 (7)0.31903 (7)0.27519 (4)0.0363 (3)
O30.65522 (12)−0.23034 (10)0.22897 (7)0.0783 (5)
O40.63373 (12)−0.18639 (10)0.30241 (6)0.0805 (5)
O50.69874 (9)0.29271 (10)0.14628 (5)0.0532 (4)
H50.6938 (13)0.2932 (16)0.1773 (3)0.080*
N10.90347 (9)0.30288 (9)0.19472 (5)0.0386 (3)
N20.93939 (9)0.38225 (9)0.20680 (5)0.0388 (3)
N30.84467 (9)0.19219 (8)0.24835 (5)0.0352 (3)
C11.00589 (13)0.52826 (12)0.26187 (9)0.0571 (5)
H11.01610.52740.22820.069*
C21.03166 (15)0.59702 (14)0.28927 (12)0.0733 (7)
H21.05930.64260.27420.088*
C31.01644 (15)0.59842 (15)0.33943 (12)0.0743 (8)
H31.03410.64480.35820.089*
C40.97544 (15)0.53153 (15)0.36130 (9)0.0660 (6)
H40.96490.53290.39500.079*
C50.94954 (13)0.46210 (12)0.33403 (7)0.0488 (5)
H5A0.92190.41670.34920.059*
C60.96483 (10)0.46020 (10)0.28401 (7)0.0373 (4)
C70.93688 (10)0.38873 (10)0.25373 (6)0.0330 (4)
C80.88199 (10)0.26667 (10)0.23605 (6)0.0324 (4)
C90.83531 (10)0.13374 (10)0.21273 (6)0.0322 (4)
C100.79134 (10)0.05235 (10)0.22781 (6)0.0332 (4)
C110.76375 (13)0.03611 (11)0.27529 (7)0.0468 (5)
H110.77340.07630.29980.056*
C120.72214 (13)−0.03911 (12)0.28662 (7)0.0504 (5)
H120.7033−0.04960.31850.060*
C130.70909 (11)−0.09794 (10)0.25015 (7)0.0409 (4)
C140.73597 (13)−0.08450 (12)0.20282 (7)0.0503 (5)
H140.7268−0.12540.17860.060*
C150.77700 (12)−0.00895 (12)0.19195 (7)0.0460 (4)
H150.79540.00110.15990.055*
N40.66286 (11)−0.17717 (10)0.26138 (7)0.0527 (4)
C160.61860 (15)0.30244 (17)0.12369 (9)0.0732 (7)
H16A0.62600.32570.09130.110*
H16B0.58400.34040.14290.110*
H16C0.59110.24780.12140.110*
U11U22U33U12U13U23
Na10.0474 (4)0.0400 (4)0.0266 (3)0.0005 (3)0.0019 (3)−0.0022 (3)
O10.0541 (8)0.0366 (6)0.0305 (6)−0.0014 (5)0.0096 (5)−0.0032 (5)
O20.0489 (7)0.0342 (6)0.0257 (6)−0.0075 (5)0.0036 (5)−0.0010 (5)
O30.0961 (13)0.0499 (9)0.0890 (12)−0.0320 (8)0.0193 (10)−0.0198 (9)
O40.1073 (14)0.0652 (10)0.0691 (11)−0.0349 (9)0.0210 (10)0.0069 (8)
O50.0461 (8)0.0717 (9)0.0420 (7)−0.0027 (7)0.0096 (6)−0.0025 (7)
N10.0496 (9)0.0373 (8)0.0289 (7)−0.0089 (7)0.0050 (6)−0.0008 (6)
N20.0448 (8)0.0390 (8)0.0327 (8)−0.0083 (6)0.0054 (6)0.0014 (6)
N30.0436 (8)0.0327 (7)0.0293 (7)−0.0048 (6)0.0049 (6)−0.0016 (6)
C10.0543 (12)0.0471 (11)0.0699 (14)−0.0149 (9)0.0119 (10)−0.0055 (10)
C20.0597 (14)0.0465 (13)0.114 (2)−0.0196 (10)0.0090 (14)−0.0121 (13)
C30.0555 (13)0.0551 (14)0.112 (2)−0.0034 (11)−0.0177 (14)−0.0392 (14)
C40.0749 (16)0.0620 (14)0.0611 (14)0.0022 (12)−0.0168 (12)−0.0249 (12)
C50.0574 (12)0.0459 (11)0.0431 (10)0.0000 (9)−0.0065 (9)−0.0064 (9)
C60.0322 (9)0.0350 (9)0.0445 (10)−0.0005 (7)−0.0022 (7)−0.0039 (8)
C70.0323 (8)0.0330 (8)0.0337 (9)−0.0034 (7)0.0030 (7)0.0021 (7)
C80.0357 (8)0.0348 (8)0.0267 (8)−0.0022 (7)0.0034 (7)−0.0036 (7)
C90.0332 (8)0.0324 (8)0.0310 (8)0.0029 (7)0.0020 (7)−0.0014 (7)
C100.0333 (8)0.0315 (8)0.0347 (8)0.0013 (7)0.0013 (7)−0.0026 (7)
C110.0656 (12)0.0363 (9)0.0384 (10)−0.0087 (8)0.0096 (9)−0.0070 (8)
C120.0681 (13)0.0432 (10)0.0399 (10)−0.0099 (9)0.0136 (9)0.0003 (8)
C130.0398 (9)0.0330 (9)0.0498 (10)−0.0038 (7)0.0046 (8)0.0003 (8)
C140.0611 (12)0.0421 (10)0.0476 (11)−0.0128 (9)0.0047 (9)−0.0114 (9)
C150.0571 (12)0.0445 (10)0.0365 (9)−0.0103 (9)0.0068 (8)−0.0058 (8)
N40.0525 (10)0.0408 (9)0.0649 (12)−0.0084 (7)0.0070 (9)0.0005 (9)
C160.0564 (14)0.0979 (19)0.0654 (15)−0.0038 (12)0.0021 (12)0.0079 (14)
Na1—O52.3413 (14)C1—H10.9300
Na1—N12.3828 (15)C2—C31.384 (4)
Na1—O12.3848 (13)C2—H20.9300
Na1—O1i2.3972 (13)C3—C41.365 (4)
Na1—N2ii2.4127 (15)C3—H30.9300
Na1—N1ii2.9859 (15)C4—C51.377 (3)
Na1—Na1i3.6261 (9)C4—H40.9300
Na1—Na1ii3.6261 (9)C5—C61.381 (3)
O1—C91.2491 (19)C5—H5A0.9300
O1—Na1ii2.3972 (13)C6—C71.457 (2)
O2—C71.3559 (19)C9—C101.506 (2)
O2—C81.3778 (18)C10—C111.385 (2)
O3—N41.218 (2)C10—C151.387 (2)
O4—N41.214 (2)C11—C121.381 (3)
O5—C161.406 (3)C11—H110.9300
O5—H50.847 (9)C12—C131.369 (3)
N1—C81.303 (2)C12—H120.9300
N1—N21.4036 (19)C13—C141.370 (3)
N1—Na1i2.9859 (15)C13—N41.469 (2)
N2—C71.280 (2)C14—C151.379 (3)
N2—Na1i2.4127 (15)C14—H140.9300
N3—C91.341 (2)C15—H150.9300
N3—C81.347 (2)C16—H16A0.9600
C1—C21.370 (3)C16—H16B0.9600
C1—C61.383 (3)C16—H16C0.9600
O5—Na1—N194.54 (5)C3—C2—H2120.1
O5—Na1—O196.43 (5)C4—C3—C2119.8 (2)
N1—Na1—O170.05 (5)C4—C3—H3120.1
O5—Na1—O1i106.86 (5)C2—C3—H3120.1
N1—Na1—O1i90.40 (5)C3—C4—C5120.7 (2)
O1—Na1—O1i150.81 (5)C3—C4—H4119.7
O5—Na1—N2ii123.14 (5)C5—C4—H4119.7
N1—Na1—N2ii141.02 (6)C4—C5—C6119.7 (2)
O1—Na1—N2ii94.03 (5)C4—C5—H5A120.1
O1i—Na1—N2ii87.87 (5)C6—C5—H5A120.1
O5—Na1—N1ii146.17 (5)C5—C6—C1119.51 (17)
N1—Na1—N1ii113.69 (6)C5—C6—C7121.38 (16)
O1—Na1—N1ii77.43 (4)C1—C6—C7119.10 (17)
O1i—Na1—N1ii91.84 (4)N2—C7—O2112.17 (14)
N2ii—Na1—N1ii27.62 (4)N2—C7—C6127.92 (15)
O5—Na1—Na1i123.35 (5)O2—C7—C6119.89 (14)
N1—Na1—Na1i55.00 (4)N1—C8—N3134.68 (15)
O1—Na1—Na1i111.36 (4)N1—C8—O2110.45 (13)
O1i—Na1—Na1i40.56 (3)N3—C8—O2114.86 (13)
N2ii—Na1—Na1i103.62 (4)O1—C9—N3126.97 (15)
N1ii—Na1—Na1i89.20 (3)O1—C9—C10117.45 (14)
O5—Na1—Na1ii136.08 (5)N3—C9—C10115.58 (14)
N1—Na1—Na1ii80.91 (4)C11—C10—C15118.53 (16)
O1—Na1—Na1ii40.82 (3)C11—C10—C9123.50 (15)
O1i—Na1—Na1ii116.78 (3)C15—C10—C9117.97 (15)
N2ii—Na1—Na1ii65.47 (4)C12—C11—C10120.78 (17)
N1ii—Na1—Na1ii40.82 (3)C12—C11—H11119.6
Na1i—Na1—Na1ii89.553 (3)C10—C11—H11119.6
C9—O1—Na1124.17 (10)C13—C12—C11118.90 (17)
C9—O1—Na1ii129.32 (11)C13—C12—H12120.5
Na1—O1—Na1ii98.63 (5)C11—C12—H12120.5
C7—O2—C8103.76 (12)C12—C13—C14122.05 (16)
C16—O5—Na1135.43 (13)C12—C13—N4119.46 (17)
C16—O5—H5110.6 (14)C14—C13—N4118.47 (16)
Na1—O5—H5113.6 (14)C13—C14—C15118.46 (17)
C8—N1—N2106.69 (13)C13—C14—H14120.8
C8—N1—Na1121.22 (11)C15—C14—H14120.8
N2—N1—Na1127.35 (10)C14—C15—C10121.27 (17)
C8—N1—Na1i154.19 (11)C14—C15—H15119.4
N2—N1—Na1i52.83 (7)C10—C15—H15119.4
Na1—N1—Na1i84.17 (4)O4—N4—O3123.11 (17)
C7—N2—N1106.93 (13)O4—N4—C13118.49 (17)
C7—N2—Na1i148.36 (12)O3—N4—C13118.39 (17)
N1—N2—Na1i99.56 (9)O5—C16—H16A109.5
C9—N3—C8117.38 (13)O5—C16—H16B109.5
C2—C1—C6120.4 (2)H16A—C16—H16B109.5
C2—C1—H1119.8O5—C16—H16C109.5
C6—C1—H1119.8H16A—C16—H16C109.5
C1—C2—C3119.8 (2)H16B—C16—H16C109.5
C1—C2—H2120.1
D—H···AD—HH···AD···AD—H···A
O5—H5···N3iii0.85 (1)2.12 (1)2.9534 (19)167 (2)
Table 1

Selected bond lengths (Å)

Na1—O52.3413 (14)
Na1—N12.3828 (15)
Na1—O12.3848 (13)
Na1—O1i2.3972 (13)
Na1—N2ii2.4127 (15)
Na1—N1ii2.9859 (15)

Symmetry codes: (i) ; (ii) .

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