Literature DB >> 22590071

(Methanol-κO){1-[2-(piperazin-4-ium-1-yl-κN(1))ethyl-imino-methyl-κN]naphthalen-2-olato-κO}bis-(thio-cyanato-κN)nickel(II) methanol monosolvate.

Pin-Ai Li1.   

Abstract

In the title solvated complex, [Ni(C(17)H(21)N(3)O)(NCS)(2)(CH(3)OH)]·CH(3)OH, the Ni(2+) ion is coordinated by one phenolate O, one imine N, and one amine N atom of the tridentate Schiff base ligand, two thio-cyanate N atoms and one methanol O atom, resulting in a distorted cis-NiO(2)N(4) octa-hedral geometry. The chelate ring formed by the phenolate O and imine N atoms approximates to an envelope with the Ni atom as the flap, whereas the chelate ring formed by the two N atoms is twisted about the C-C bond. In the crystal, the components are linked by O-H⋯O, N-H⋯O, N-H⋯S, and O-H⋯S hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590071      PMCID: PMC3344305          DOI: 10.1107/S1600536812013773

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological properties of nickel complexes of Schiff bases, see: Chohan & Kausar (1993 ▶); Osowole et al. (2008 ▶); Arif et al. (2011 ▶). For related structures, see: Ji & Lu (2010 ▶); Wang (2010 ▶); Xue et al. (2010 ▶).

Experimental

Crystal data

[Ni(C17H21N3O)(NCS)2(CH4O)]·CH4O M = 522.32 Monoclinic, a = 9.7420 (19) Å b = 15.304 (3) Å c = 18.302 (5) Å β = 116.01 (2)° V = 2452.3 (10) Å3 Z = 4 Mo Kα radiation μ = 0.99 mm−1 T = 298 K 0.17 × 0.15 × 0.15 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.849, T max = 0.865 16581 measured reflections 4196 independent reflections 2354 reflections with I > 2σ(I) R int = 0.153

Refinement

R[F 2 > 2σ(F 2)] = 0.092 wR(F 2) = 0.209 S = 1.00 4196 reflections 295 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.05 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013773/hb6710sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013773/hb6710Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C17H21N3O)(NCS)2(CH4O)]·CH4OF(000) = 1096
Mr = 522.32Dx = 1.415 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.7420 (19) ÅCell parameters from 888 reflections
b = 15.304 (3) Åθ = 2.3–24.5°
c = 18.302 (5) ŵ = 0.99 mm1
β = 116.01 (2)°T = 298 K
V = 2452.3 (10) Å3Block, green
Z = 40.17 × 0.15 × 0.15 mm
Bruker SMART 1000 CCD diffractometer4196 independent reflections
Radiation source: fine-focus sealed tube2354 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.153
ω scanθmax = 25.2°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −11→11
Tmin = 0.849, Tmax = 0.865k = −18→18
16581 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.092Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.209H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0864P)2] where P = (Fo2 + 2Fc2)/3
4196 reflections(Δ/σ)max < 0.001
295 parametersΔρmax = 1.05 e Å3
1 restraintΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.08725 (12)0.32345 (6)0.35614 (6)0.0356 (3)
S1−0.3385 (3)0.40557 (18)0.11040 (14)0.0662 (8)
S2−0.1939 (3)0.23841 (17)0.50772 (14)0.0641 (8)
O10.1635 (7)0.4331 (3)0.4268 (3)0.0465 (15)
O20.2267 (8)0.3634 (4)0.2996 (4)0.0612 (17)
O30.0875 (10)0.4095 (6)0.1353 (4)0.097 (3)
H30.00550.38400.11280.145*
N10.2670 (7)0.2604 (4)0.4397 (4)0.0437 (18)
N20.0484 (7)0.1938 (4)0.2933 (4)0.0348 (15)
N3−0.0853 (8)0.3835 (4)0.2599 (4)0.0488 (19)
N4−0.0474 (8)0.2903 (4)0.4131 (4)0.0412 (17)
N5−0.1175 (7)0.0886 (4)0.1435 (4)0.0450 (18)
H5A−0.17290.13020.10800.054*
H5B−0.13890.03700.11730.054*
C10.3224 (8)0.3598 (5)0.5527 (4)0.0374 (19)
C20.2355 (9)0.4313 (5)0.5085 (5)0.041 (2)
C30.2202 (10)0.5057 (6)0.5479 (5)0.053 (2)
H3A0.15820.55120.51740.063*
C40.2957 (11)0.5132 (6)0.6318 (5)0.054 (2)
H40.28730.56430.65690.065*
C50.3847 (9)0.4438 (5)0.6788 (5)0.043 (2)
C60.4632 (11)0.4468 (7)0.7668 (5)0.058 (3)
H60.45640.49780.79260.070*
C70.5449 (10)0.3806 (7)0.8133 (5)0.054 (3)
H70.59400.38610.86960.065*
C80.5545 (10)0.3047 (7)0.7763 (5)0.060 (3)
H80.61010.25810.80820.072*
C90.4832 (9)0.2953 (6)0.6919 (5)0.046 (2)
H90.49030.24260.66850.055*
C100.3988 (9)0.3667 (6)0.6409 (4)0.042 (2)
C110.3444 (11)0.2811 (5)0.5145 (5)0.052 (2)
H110.42090.24280.54710.062*
C120.2999 (10)0.1768 (6)0.4112 (5)0.055 (3)
H12A0.36120.13980.45700.066*
H12B0.35540.18650.37900.066*
C130.1465 (10)0.1340 (5)0.3598 (5)0.049 (2)
H13A0.16230.08000.33670.059*
H13B0.09600.11990.39370.059*
C140.0892 (9)0.1941 (5)0.2235 (4)0.040 (2)
H14A0.19810.20430.24410.048*
H14B0.03660.24210.18750.048*
C150.0481 (10)0.1082 (5)0.1741 (5)0.043 (2)
H15A0.07320.11350.12850.052*
H15B0.10760.06060.20820.052*
C16−0.1588 (10)0.0854 (5)0.2119 (5)0.048 (2)
H16A−0.10490.03750.24780.058*
H16B−0.26750.07450.19120.058*
C17−0.1185 (10)0.1709 (5)0.2595 (5)0.048 (2)
H17A−0.17800.21770.22420.057*
H17B−0.14670.16650.30400.057*
C18−0.1908 (10)0.3914 (5)0.1988 (5)0.0382 (19)
C19−0.1038 (10)0.2711 (5)0.4529 (5)0.041 (2)
C200.3836 (12)0.3845 (8)0.3386 (7)0.087 (4)
H20A0.39760.44410.32690.130*
H20B0.43890.34660.31920.130*
H20C0.42080.37730.39620.130*
C220.1608 (19)0.4057 (12)0.0882 (9)0.148 (7)
H22A0.15220.46100.06180.222*
H22B0.11600.36090.04800.222*
H22C0.26660.39250.12120.222*
H20.189 (11)0.361 (7)0.2499 (8)0.080*
U11U22U33U12U13U23
Ni10.0411 (6)0.0276 (5)0.0256 (5)0.0056 (5)0.0031 (4)0.0015 (4)
S10.0644 (17)0.0600 (17)0.0413 (14)0.0051 (13)−0.0072 (12)−0.0074 (12)
S20.084 (2)0.0604 (17)0.0447 (14)−0.0249 (14)0.0252 (14)−0.0107 (12)
O10.077 (4)0.017 (3)0.028 (3)0.012 (3)0.006 (3)0.002 (2)
O20.062 (5)0.062 (4)0.051 (4)−0.018 (3)0.017 (4)−0.021 (4)
O30.100 (7)0.124 (8)0.056 (5)−0.019 (6)0.025 (5)−0.004 (5)
N10.047 (4)0.042 (4)0.025 (4)0.013 (3)0.000 (3)−0.008 (3)
N20.045 (4)0.026 (4)0.027 (3)0.006 (3)0.010 (3)0.002 (3)
N30.052 (5)0.040 (4)0.038 (4)0.006 (3)0.005 (4)0.004 (3)
N40.058 (5)0.034 (4)0.031 (4)0.011 (3)0.019 (4)−0.004 (3)
N50.053 (5)0.034 (4)0.035 (4)0.009 (3)0.007 (4)−0.002 (3)
C10.033 (5)0.030 (4)0.029 (4)0.002 (4)−0.005 (4)−0.001 (3)
C20.045 (5)0.032 (5)0.033 (5)−0.003 (4)0.005 (4)0.001 (4)
C30.068 (7)0.034 (5)0.054 (6)0.007 (4)0.025 (5)−0.001 (4)
C40.072 (7)0.039 (5)0.038 (5)0.020 (5)0.012 (5)−0.001 (4)
C50.043 (5)0.043 (5)0.040 (5)−0.009 (4)0.014 (4)−0.015 (4)
C60.059 (6)0.072 (7)0.040 (5)−0.005 (5)0.018 (5)−0.006 (5)
C70.059 (6)0.074 (8)0.029 (5)−0.019 (5)0.018 (5)−0.010 (5)
C80.043 (6)0.082 (8)0.043 (6)0.004 (5)0.008 (5)0.019 (5)
C90.051 (6)0.052 (6)0.026 (4)−0.008 (4)0.009 (4)0.007 (4)
C100.037 (5)0.049 (5)0.027 (4)0.001 (4)0.001 (4)−0.004 (4)
C110.062 (6)0.035 (5)0.048 (6)0.019 (4)0.013 (5)0.007 (4)
C120.056 (6)0.049 (5)0.030 (5)0.031 (5)−0.009 (4)−0.009 (4)
C130.080 (7)0.030 (5)0.037 (5)0.005 (4)0.024 (5)−0.005 (4)
C140.044 (5)0.021 (4)0.034 (4)0.000 (3)−0.001 (4)−0.004 (3)
C150.052 (6)0.037 (5)0.040 (5)−0.004 (4)0.019 (4)−0.007 (4)
C160.042 (5)0.036 (5)0.054 (6)−0.011 (4)0.010 (4)−0.010 (4)
C170.062 (6)0.024 (4)0.057 (6)−0.005 (4)0.026 (5)−0.006 (4)
C180.050 (5)0.023 (4)0.038 (5)0.006 (4)0.015 (4)0.002 (4)
C190.048 (6)0.044 (5)0.028 (5)0.006 (4)0.012 (4)−0.008 (4)
C200.056 (7)0.104 (10)0.104 (9)−0.015 (7)0.040 (7)−0.002 (8)
C220.141 (14)0.199 (19)0.132 (13)−0.042 (13)0.085 (13)−0.032 (13)
Ni1—N11.997 (6)C5—C101.406 (11)
Ni1—N32.044 (7)C5—C61.450 (11)
Ni1—O12.049 (5)C6—C71.337 (12)
Ni1—N42.064 (7)C6—H60.9300
Ni1—O22.128 (7)C7—C81.369 (12)
Ni1—N22.241 (6)C7—H70.9300
S1—C181.641 (9)C8—C91.396 (11)
S2—C191.673 (10)C8—H80.9300
O1—C21.344 (9)C9—C101.438 (11)
O2—C201.411 (11)C9—H90.9300
O2—H20.818 (10)C11—H110.9300
O3—C221.339 (13)C12—C131.521 (12)
O3—H30.8200C12—H12A0.9700
N1—C111.281 (10)C12—H12B0.9700
N1—C121.468 (9)C13—H13A0.9700
N2—C131.487 (9)C13—H13B0.9700
N2—C141.495 (9)C14—C151.546 (10)
N2—C171.505 (10)C14—H14A0.9700
N3—C181.146 (9)C14—H14B0.9700
N4—C191.128 (9)C15—H15A0.9700
N5—C161.473 (9)C15—H15B0.9700
N5—C151.488 (10)C16—C171.525 (10)
N5—H5A0.9000C16—H16A0.9700
N5—H5B0.9000C16—H16B0.9700
C1—C21.403 (10)C17—H17A0.9700
C1—C101.454 (10)C17—H17B0.9700
C1—C111.455 (11)C20—H20A0.9600
C2—C31.390 (11)C20—H20B0.9600
C3—C41.386 (12)C20—H20C0.9600
C3—H3A0.9300C22—H22A0.9600
C4—C51.402 (11)C22—H22B0.9600
C4—H40.9300C22—H22C0.9600
N1—Ni1—N3172.3 (3)C9—C8—H8119.1
N1—Ni1—O187.7 (2)C8—C9—C10120.4 (8)
N3—Ni1—O196.3 (2)C8—C9—H9119.8
N1—Ni1—N491.9 (3)C10—C9—H9119.8
N3—Ni1—N494.6 (3)C5—C10—C9118.0 (7)
O1—Ni1—N491.0 (2)C5—C10—C1119.7 (7)
N1—Ni1—O288.8 (3)C9—C10—C1122.3 (7)
N3—Ni1—O284.9 (3)N1—C11—C1125.3 (8)
O1—Ni1—O286.6 (2)N1—C11—H11117.4
N4—Ni1—O2177.4 (2)C1—C11—H11117.4
N1—Ni1—N281.9 (2)N1—C12—C13106.7 (7)
N3—Ni1—N293.8 (2)N1—C12—H12A110.4
O1—Ni1—N2169.1 (2)C13—C12—H12A110.4
N4—Ni1—N292.3 (2)N1—C12—H12B110.4
O2—Ni1—N290.3 (2)C13—C12—H12B110.4
C2—O1—Ni1123.5 (4)H12A—C12—H12B108.6
C20—O2—Ni1126.9 (6)N2—C13—C12110.2 (7)
C20—O2—H2116 (8)N2—C13—H13A109.6
Ni1—O2—H2117 (7)C12—C13—H13A109.6
C22—O3—H3109.5N2—C13—H13B109.6
C11—N1—C12118.5 (7)C12—C13—H13B109.6
C11—N1—Ni1127.3 (6)H13A—C13—H13B108.1
C12—N1—Ni1113.8 (5)N2—C14—C15113.6 (6)
C13—N2—C14112.6 (6)N2—C14—H14A108.9
C13—N2—C17112.5 (6)C15—C14—H14A108.9
C14—N2—C17107.1 (6)N2—C14—H14B108.9
C13—N2—Ni1102.8 (4)C15—C14—H14B108.9
C14—N2—Ni1112.8 (4)H14A—C14—H14B107.7
C17—N2—Ni1109.0 (4)N5—C15—C14110.6 (6)
C18—N3—Ni1159.3 (7)N5—C15—H15A109.5
C19—N4—Ni1171.1 (7)C14—C15—H15A109.5
C16—N5—C15110.0 (6)N5—C15—H15B109.5
C16—N5—H5A109.7C14—C15—H15B109.5
C15—N5—H5A109.7H15A—C15—H15B108.1
C16—N5—H5B109.7N5—C16—C17111.0 (7)
C15—N5—H5B109.7N5—C16—H16A109.4
H5A—N5—H5B108.2C17—C16—H16A109.4
C2—C1—C10118.0 (7)N5—C16—H16B109.4
C2—C1—C11123.1 (7)C17—C16—H16B109.4
C10—C1—C11118.8 (7)H16A—C16—H16B108.0
O1—C2—C3115.9 (7)N2—C17—C16113.3 (6)
O1—C2—C1123.2 (7)N2—C17—H17A108.9
C3—C2—C1120.9 (7)C16—C17—H17A108.9
C4—C3—C2121.1 (8)N2—C17—H17B108.9
C4—C3—H3A119.4C16—C17—H17B108.9
C2—C3—H3A119.4H17A—C17—H17B107.7
C3—C4—C5120.2 (8)N3—C18—S1177.8 (8)
C3—C4—H4119.9N4—C19—S2176.6 (8)
C5—C4—H4119.9O2—C20—H20A109.5
C4—C5—C10120.0 (7)O2—C20—H20B109.5
C4—C5—C6122.8 (8)H20A—C20—H20B109.5
C10—C5—C6117.2 (8)O2—C20—H20C109.5
C7—C6—C5124.1 (9)H20A—C20—H20C109.5
C7—C6—H6118.0H20B—C20—H20C109.5
C5—C6—H6118.0O3—C22—H22A109.5
C6—C7—C8118.6 (8)O3—C22—H22B109.5
C6—C7—H7120.7H22A—C22—H22B109.5
C8—C7—H7120.7O3—C22—H22C109.5
C7—C8—C9121.8 (9)H22A—C22—H22C109.5
C7—C8—H8119.1H22B—C22—H22C109.5
D—H···AD—HH···AD···AD—H···A
O2—H2···O30.82 (1)2.03 (4)2.793 (10)155 (10)
N5—H5B···O1i0.901.752.649 (8)175
N5—H5A···S2ii0.902.673.480 (7)150
O3—H3···S2ii0.822.783.532 (9)154
Table 1

Selected bond lengths (Å)

Ni1—N11.997 (6)
Ni1—N32.044 (7)
Ni1—O12.049 (5)
Ni1—N42.064 (7)
Ni1—O22.128 (7)
Ni1—N22.241 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O30.82 (1)2.03 (4)2.793 (10)155 (10)
N5—H5B⋯O1i0.901.752.649 (8)175
N5—H5A⋯S2ii0.902.673.480 (7)150
O3—H3⋯S2ii0.822.783.532 (9)154

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structural and biological studies of nickel(II), copper(II) and zinc(II) chelates with tridentate Schiff bases having NNO and NNS donor systems.

Authors:  Z H Chohan; S Kausar
Journal:  Chem Pharm Bull (Tokyo)       Date:  1993-05       Impact factor: 1.645

3.  Bis{1-[3-(diethyl-ammonio)-propyl-imino-meth-yl]naphthalen-2-olato}nickel(II) dinitrate.

Authors:  Xiao-Hui Ji; Jiu-Fu Lu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-03

4.  {N,N'-Bis[1-(2-pyrid-yl)ethyl-idene]propane-1,2-diamine}-bis(thio-cyanato-κN)-nickel(II).

Authors:  Ning Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

5.  Bis{2-[3-(dimethyl-ammonio)-propyl-imino-methyl-κN]-6-meth-oxy-phenolato-κO}bis-(thio-cyanato-κN)nickel(II).

Authors:  Ling-Wei Xue; Gan-Qing Zhao; Yong-Jun Han; Li-Hua Chen; Qin-Long Peng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-02
  5 in total

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