| Literature DB >> 22590066 |
Qing Zhang1, Xing Wang, Shen-Tang Wang, Chun-Bo Liu, Guang-Bo Che.
Abstract
In the title compound, {[Nd(3)(C(7)H(3)NO(4))(3)(OH)(3)]·H(2)O}(n), the Nd(III) atom is eight-coordinated by the three O atoms of three asymmetrically μ(3)-bridging hydroxide groups, by four carboxyl-ate O atoms of four different pyridine-2,5-dicarboxyl-ate (2,5-pydc) ligands, and by the N atom of a 2,5-pydc ligand. Six Nd atoms are connected by six hydroxide groups, forming an [Nd(6)(μ(3)-OH)(6)] cluster unit of symmetry -3 and a slightly compressed octa-hedral geometry. Adjacent [Nd(6)(μ(3)-OH)(6)] clusters are connected by the 2,5-pydc ligands, via O and N atoms, forming chains along the c axis. The remaining O atoms of the 2,5-pydc ligands link these chains into a three-dimensional framework. A disordered water molecule, located on a threefold rotation axis at the opposite side of the [Nd(6)(μ(3)-OH)(6)] cluster and exposed to each of the three Nd atoms, completes the structure.Entities:
Year: 2012 PMID: 22590066 PMCID: PMC3344300 DOI: 10.1107/S160053681201286X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Nd3(C7H3NO4)3(OH)3]·H2O | |
| Mo | |
| Hexagonal, | Cell parameters from 3338 reflections |
| Hall symbol: -R 3 | θ = 3.1–29.0° |
| µ = 5.65 mm−1 | |
| Prism, pink | |
| 0.16 × 0.15 × 0.11 mm | |
| Bruker SMART CCD area-detector diffractometer | 1679 independent reflections |
| Radiation source: fine-focus sealed tube | 1558 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 25.3°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 3454 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1679 reflections | (Δ/σ)max = 0.001 |
| 133 parameters | Δρmax = 0.77 e Å−3 |
| 0 restraints | Δρmin = −0.65 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Nd1 | 0.041666 (9) | 0.128240 (9) | 0.329953 (18) | 0.00891 (7) | |
| C1 | 0.03699 (16) | 0.21892 (16) | 0.0150 (4) | 0.0131 (7) | |
| C2 | 0.0445 (2) | 0.26676 (18) | −0.0868 (4) | 0.0253 (9) | |
| H2 | 0.0244 | 0.2544 | −0.1801 | 0.030* | |
| C3 | 0.0822 (2) | 0.33329 (18) | −0.0484 (4) | 0.0290 (10) | |
| H3 | 0.0873 | 0.3664 | −0.1150 | 0.035* | |
| C4 | 0.11239 (17) | 0.35025 (16) | 0.0903 (4) | 0.0157 (7) | |
| C5 | 0.10166 (17) | 0.29858 (16) | 0.1863 (4) | 0.0137 (7) | |
| H5 | 0.1211 | 0.3095 | 0.2804 | 0.016* | |
| C6 | −0.00545 (16) | 0.14569 (16) | −0.0166 (4) | 0.0121 (7) | |
| C7 | 0.15650 (17) | 0.42256 (17) | 0.1364 (4) | 0.0150 (8) | |
| N1 | 0.06494 (13) | 0.23415 (13) | 0.1504 (3) | 0.0113 (6) | |
| O1 | 0.19772 (12) | 0.43481 (11) | 0.2386 (3) | 0.0186 (6) | |
| O2 | 0.14805 (13) | 0.46471 (12) | 0.0684 (3) | 0.0261 (6) | |
| O3 | −0.02355 (11) | 0.12927 (11) | −0.1493 (2) | 0.0147 (5) | |
| O4 | −0.02057 (12) | 0.10561 (11) | 0.0918 (3) | 0.0167 (5) | |
| O1w | 0.0000 | 0.0000 | 0.1697 (6) | 0.0634 (18) | |
| O5 | 0.03467 (11) | 0.10550 (12) | 0.6017 (3) | 0.0118 (5) | |
| H1 | 0.0397 (19) | 0.1334 (18) | 0.650 (5) | 0.018* |
| Nd1 | 0.00801 (11) | 0.01015 (11) | 0.00950 (11) | 0.00524 (8) | 0.00187 (7) | 0.00291 (7) |
| C1 | 0.0133 (17) | 0.0111 (17) | 0.0147 (17) | 0.0060 (15) | −0.0010 (14) | −0.0013 (14) |
| C2 | 0.037 (2) | 0.019 (2) | 0.0163 (18) | 0.0109 (18) | −0.0151 (17) | −0.0036 (17) |
| C3 | 0.043 (3) | 0.0125 (19) | 0.024 (2) | 0.0085 (19) | −0.0149 (19) | 0.0048 (16) |
| C4 | 0.0184 (19) | 0.0104 (17) | 0.0162 (18) | 0.0057 (15) | −0.0035 (15) | −0.0027 (15) |
| C5 | 0.0146 (17) | 0.0117 (17) | 0.0134 (17) | 0.0056 (15) | −0.0029 (14) | −0.0012 (14) |
| C6 | 0.0075 (16) | 0.0135 (17) | 0.0136 (17) | 0.0039 (14) | 0.0005 (14) | −0.0043 (14) |
| C7 | 0.0141 (17) | 0.0104 (17) | 0.0154 (18) | 0.0023 (15) | 0.0022 (15) | 0.0008 (15) |
| N1 | 0.0113 (14) | 0.0098 (14) | 0.0115 (14) | 0.0044 (12) | −0.0018 (12) | −0.0018 (11) |
| O1 | 0.0217 (14) | 0.0120 (12) | 0.0182 (13) | 0.0055 (11) | −0.0091 (11) | −0.0003 (10) |
| O2 | 0.0294 (15) | 0.0104 (13) | 0.0324 (15) | 0.0054 (12) | −0.0165 (13) | 0.0040 (12) |
| O3 | 0.0144 (12) | 0.0151 (13) | 0.0132 (12) | 0.0063 (10) | −0.0013 (10) | −0.0043 (10) |
| O4 | 0.0180 (13) | 0.0114 (12) | 0.0120 (12) | 0.0008 (11) | 0.0006 (10) | −0.0003 (10) |
| O1w | 0.085 (3) | 0.085 (3) | 0.020 (3) | 0.0425 (15) | 0.000 | 0.000 |
| O5 | 0.0129 (12) | 0.0141 (12) | 0.0106 (12) | 0.0085 (11) | −0.0015 (10) | −0.0039 (10) |
| Nd1—O2i | 2.395 (2) | C4—C5 | 1.389 (5) |
| Nd1—O3ii | 2.426 (2) | C4—C7 | 1.515 (5) |
| Nd1—O1iii | 2.452 (2) | C5—N1 | 1.331 (4) |
| Nd1—O4 | 2.480 (2) | C5—H5 | 0.9300 |
| Nd1—O5 | 2.482 (2) | C6—O3 | 1.256 (4) |
| Nd1—O5iv | 2.485 (2) | C6—O4 | 1.264 (4) |
| Nd1—O5v | 2.501 (2) | C7—O2 | 1.244 (4) |
| Nd1—N1 | 2.747 (3) | C7—O1 | 1.247 (4) |
| C1—N1 | 1.337 (4) | O1—Nd1iii | 2.452 (2) |
| C1—C2 | 1.375 (5) | O2—Nd1vi | 2.395 (2) |
| C1—C6 | 1.497 (4) | O3—Nd1vii | 2.426 (2) |
| C2—C3 | 1.377 (5) | O5—Nd1v | 2.485 (2) |
| C2—H2 | 0.9300 | O5—Nd1iv | 2.501 (2) |
| C3—C4 | 1.384 (5) | O5—H1 | 0.73 (4) |
| C3—H3 | 0.9300 | ||
| O2i—Nd1—O3ii | 133.07 (8) | O5—Nd1—Nd1v | 36.03 (5) |
| O2i—Nd1—O1iii | 80.41 (9) | O5iv—Nd1—Nd1v | 91.91 (6) |
| O3ii—Nd1—O1iii | 77.55 (8) | O5v—Nd1—Nd1v | 36.09 (5) |
| O2i—Nd1—O4 | 85.50 (9) | N1—Nd1—Nd1v | 139.35 (5) |
| O3ii—Nd1—O4 | 78.54 (8) | Nd1iv—Nd1—Nd1v | 68.623 (13) |
| O1iii—Nd1—O4 | 130.65 (8) | N1—C1—C2 | 122.8 (3) |
| O2i—Nd1—O5 | 81.79 (8) | N1—C1—C6 | 115.2 (3) |
| O3ii—Nd1—O5 | 131.58 (7) | C2—C1—C6 | 122.0 (3) |
| O1iii—Nd1—O5 | 77.64 (8) | C1—C2—C3 | 119.0 (3) |
| O4—Nd1—O5 | 146.31 (7) | C1—C2—H2 | 120.5 |
| O2i—Nd1—O5iv | 77.35 (8) | C3—C2—H2 | 120.5 |
| O3ii—Nd1—O5iv | 138.97 (8) | C2—C3—C4 | 119.2 (3) |
| O1iii—Nd1—O5iv | 142.14 (8) | C2—C3—H3 | 120.4 |
| O4—Nd1—O5iv | 77.63 (8) | C4—C3—H3 | 120.4 |
| O5—Nd1—O5iv | 69.19 (8) | C3—C4—C5 | 117.8 (3) |
| O2i—Nd1—O5v | 150.20 (8) | C3—C4—C7 | 121.6 (3) |
| O3ii—Nd1—O5v | 69.18 (8) | C5—C4—C7 | 120.7 (3) |
| O1iii—Nd1—O5v | 87.76 (8) | N1—C5—C4 | 123.4 (3) |
| O4—Nd1—O5v | 122.15 (8) | N1—C5—H5 | 118.3 |
| O5—Nd1—O5v | 68.94 (8) | C4—C5—H5 | 118.3 |
| O5iv—Nd1—O5v | 96.63 (11) | O3—C6—O4 | 125.4 (3) |
| O2i—Nd1—N1 | 65.27 (8) | O3—C6—C1 | 116.8 (3) |
| O3ii—Nd1—N1 | 68.36 (8) | O4—C6—C1 | 117.8 (3) |
| O1iii—Nd1—N1 | 70.02 (8) | O2—C7—O1 | 125.7 (3) |
| O4—Nd1—N1 | 61.14 (8) | O2—C7—C4 | 116.5 (3) |
| O5—Nd1—N1 | 136.65 (8) | O1—C7—C4 | 117.8 (3) |
| O5iv—Nd1—N1 | 124.92 (8) | C5—N1—C1 | 117.8 (3) |
| O5v—Nd1—N1 | 135.26 (8) | C5—N1—Nd1 | 125.8 (2) |
| O2i—Nd1—Nd1iv | 65.95 (6) | C1—N1—Nd1 | 116.4 (2) |
| O3ii—Nd1—Nd1iv | 160.68 (5) | C7—O1—Nd1iii | 133.4 (2) |
| O1iii—Nd1—Nd1iv | 106.55 (6) | C7—O2—Nd1vi | 142.0 (2) |
| O4—Nd1—Nd1iv | 110.13 (5) | C6—O3—Nd1vii | 148.7 (2) |
| O5—Nd1—Nd1iv | 36.42 (5) | C6—O4—Nd1 | 126.1 (2) |
| O5iv—Nd1—Nd1iv | 35.97 (5) | Nd1—O5—Nd1v | 108.00 (8) |
| O5v—Nd1—Nd1iv | 91.90 (6) | Nd1—O5—Nd1iv | 107.49 (8) |
| N1—Nd1—Nd1iv | 130.94 (6) | Nd1v—O5—Nd1iv | 130.61 (10) |
| O2i—Nd1—Nd1v | 114.28 (7) | Nd1—O5—H1 | 115 (3) |
| O3ii—Nd1—Nd1v | 96.13 (6) | Nd1v—O5—H1 | 104 (3) |
| O1iii—Nd1—Nd1v | 69.98 (5) | Nd1iv—O5—H1 | 91 (3) |
| O4—Nd1—Nd1v | 155.32 (5) |
Selected bond lengths (Å)
| Nd1—O2i | 2.395 (2) |
| Nd1—O3ii | 2.426 (2) |
| Nd1—O1iii | 2.452 (2) |
| Nd1—O4 | 2.480 (2) |
| Nd1—O5 | 2.482 (2) |
| Nd1—O5iv | 2.485 (2) |
| Nd1—O5v | 2.501 (2) |
| Nd1—N1 | 2.747 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .