Literature DB >> 22590066

Poly[[tri-μ(3)-hydroxido-tris-(μ(4)-pyridine-2,5-dicarboxyl-ato)trineodymium(III)] monohydrate].

Qing Zhang1, Xing Wang, Shen-Tang Wang, Chun-Bo Liu, Guang-Bo Che.   

Abstract

In the title compound, {[Nd(3)(C(7)H(3)NO(4))(3)(OH)(3)]·H(2)O}(n), the Nd(III) atom is eight-coordinated by the three O atoms of three asymmetrically μ(3)-bridging hydroxide groups, by four carboxyl-ate O atoms of four different pyridine-2,5-dicarboxyl-ate (2,5-pydc) ligands, and by the N atom of a 2,5-pydc ligand. Six Nd atoms are connected by six hydroxide groups, forming an [Nd(6)(μ(3)-OH)(6)] cluster unit of symmetry -3 and a slightly compressed octa-hedral geometry. Adjacent [Nd(6)(μ(3)-OH)(6)] clusters are connected by the 2,5-pydc ligands, via O and N atoms, forming chains along the c axis. The remaining O atoms of the 2,5-pydc ligands link these chains into a three-dimensional framework. A disordered water molecule, located on a threefold rotation axis at the opposite side of the [Nd(6)(μ(3)-OH)(6)] cluster and exposed to each of the three Nd atoms, completes the structure.

Entities:  

Year:  2012        PMID: 22590066      PMCID: PMC3344300          DOI: 10.1107/S160053681201286X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the importance of the 2,5-pyridine dicarboxylate ligand, see: Qin et al. (2005 ▶); Song et al. (2005 ▶); Huang, Jiang et al. (2008 ▶); Huang et al. (2007 ▶). For related coordination polymers involving 2,5-pyridine dicarboxylate ligands, see: Aghabozorg et al. (2008 ▶); Xu et al. (2008 ▶); Colak et al. (2010 ▶). For the use of compounds with M—O—M frameworks, see: Huang et al. (2007 ▶); Price et al. (2001 ▶); Huang, Song et al. (2008 ▶); Zhang et al. (2009 ▶).

Experimental

Crystal data

[Nd3(C7H3NO4)3(OH)3]·H2O M = 997.07 Hexagonal, a = 23.081 (3) Å c = 8.9690 (18) Å V = 4138.0 (12) Å3 Z = 6 Mo Kα radiation μ = 5.65 mm−1 T = 297 K 0.16 × 0.15 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.421, T max = 0.538 3454 measured reflections 1679 independent reflections 1558 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.043 S = 1.10 1679 reflections 133 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.77 e Å−3 Δρmin = −0.65 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201286X/qk2031sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201286X/qk2031Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Nd3(C7H3NO4)3(OH)3]·H2ODx = 2.401 Mg m3
Mr = 997.07Mo Kα radiation, λ = 0.71073 Å
Hexagonal, R3Cell parameters from 3338 reflections
Hall symbol: -R 3θ = 3.1–29.0°
a = 23.081 (3) ŵ = 5.65 mm1
c = 8.9690 (18) ÅT = 297 K
V = 4138.0 (12) Å3Prism, pink
Z = 60.16 × 0.15 × 0.11 mm
F(000) = 2814
Bruker SMART CCD area-detector diffractometer1679 independent reflections
Radiation source: fine-focus sealed tube1558 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
ω scansθmax = 25.3°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −17→26
Tmin = 0.421, Tmax = 0.538k = −27→23
3454 measured reflectionsl = −10→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.043H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.021P)2] where P = (Fo2 + 2Fc2)/3
1679 reflections(Δ/σ)max = 0.001
133 parametersΔρmax = 0.77 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Nd10.041666 (9)0.128240 (9)0.329953 (18)0.00891 (7)
C10.03699 (16)0.21892 (16)0.0150 (4)0.0131 (7)
C20.0445 (2)0.26676 (18)−0.0868 (4)0.0253 (9)
H20.02440.2544−0.18010.030*
C30.0822 (2)0.33329 (18)−0.0484 (4)0.0290 (10)
H30.08730.3664−0.11500.035*
C40.11239 (17)0.35025 (16)0.0903 (4)0.0157 (7)
C50.10166 (17)0.29858 (16)0.1863 (4)0.0137 (7)
H50.12110.30950.28040.016*
C6−0.00545 (16)0.14569 (16)−0.0166 (4)0.0121 (7)
C70.15650 (17)0.42256 (17)0.1364 (4)0.0150 (8)
N10.06494 (13)0.23415 (13)0.1504 (3)0.0113 (6)
O10.19772 (12)0.43481 (11)0.2386 (3)0.0186 (6)
O20.14805 (13)0.46471 (12)0.0684 (3)0.0261 (6)
O3−0.02355 (11)0.12927 (11)−0.1493 (2)0.0147 (5)
O4−0.02057 (12)0.10561 (11)0.0918 (3)0.0167 (5)
O1w0.00000.00000.1697 (6)0.0634 (18)
O50.03467 (11)0.10550 (12)0.6017 (3)0.0118 (5)
H10.0397 (19)0.1334 (18)0.650 (5)0.018*
U11U22U33U12U13U23
Nd10.00801 (11)0.01015 (11)0.00950 (11)0.00524 (8)0.00187 (7)0.00291 (7)
C10.0133 (17)0.0111 (17)0.0147 (17)0.0060 (15)−0.0010 (14)−0.0013 (14)
C20.037 (2)0.019 (2)0.0163 (18)0.0109 (18)−0.0151 (17)−0.0036 (17)
C30.043 (3)0.0125 (19)0.024 (2)0.0085 (19)−0.0149 (19)0.0048 (16)
C40.0184 (19)0.0104 (17)0.0162 (18)0.0057 (15)−0.0035 (15)−0.0027 (15)
C50.0146 (17)0.0117 (17)0.0134 (17)0.0056 (15)−0.0029 (14)−0.0012 (14)
C60.0075 (16)0.0135 (17)0.0136 (17)0.0039 (14)0.0005 (14)−0.0043 (14)
C70.0141 (17)0.0104 (17)0.0154 (18)0.0023 (15)0.0022 (15)0.0008 (15)
N10.0113 (14)0.0098 (14)0.0115 (14)0.0044 (12)−0.0018 (12)−0.0018 (11)
O10.0217 (14)0.0120 (12)0.0182 (13)0.0055 (11)−0.0091 (11)−0.0003 (10)
O20.0294 (15)0.0104 (13)0.0324 (15)0.0054 (12)−0.0165 (13)0.0040 (12)
O30.0144 (12)0.0151 (13)0.0132 (12)0.0063 (10)−0.0013 (10)−0.0043 (10)
O40.0180 (13)0.0114 (12)0.0120 (12)0.0008 (11)0.0006 (10)−0.0003 (10)
O1w0.085 (3)0.085 (3)0.020 (3)0.0425 (15)0.0000.000
O50.0129 (12)0.0141 (12)0.0106 (12)0.0085 (11)−0.0015 (10)−0.0039 (10)
Nd1—O2i2.395 (2)C4—C51.389 (5)
Nd1—O3ii2.426 (2)C4—C71.515 (5)
Nd1—O1iii2.452 (2)C5—N11.331 (4)
Nd1—O42.480 (2)C5—H50.9300
Nd1—O52.482 (2)C6—O31.256 (4)
Nd1—O5iv2.485 (2)C6—O41.264 (4)
Nd1—O5v2.501 (2)C7—O21.244 (4)
Nd1—N12.747 (3)C7—O11.247 (4)
C1—N11.337 (4)O1—Nd1iii2.452 (2)
C1—C21.375 (5)O2—Nd1vi2.395 (2)
C1—C61.497 (4)O3—Nd1vii2.426 (2)
C2—C31.377 (5)O5—Nd1v2.485 (2)
C2—H20.9300O5—Nd1iv2.501 (2)
C3—C41.384 (5)O5—H10.73 (4)
C3—H30.9300
O2i—Nd1—O3ii133.07 (8)O5—Nd1—Nd1v36.03 (5)
O2i—Nd1—O1iii80.41 (9)O5iv—Nd1—Nd1v91.91 (6)
O3ii—Nd1—O1iii77.55 (8)O5v—Nd1—Nd1v36.09 (5)
O2i—Nd1—O485.50 (9)N1—Nd1—Nd1v139.35 (5)
O3ii—Nd1—O478.54 (8)Nd1iv—Nd1—Nd1v68.623 (13)
O1iii—Nd1—O4130.65 (8)N1—C1—C2122.8 (3)
O2i—Nd1—O581.79 (8)N1—C1—C6115.2 (3)
O3ii—Nd1—O5131.58 (7)C2—C1—C6122.0 (3)
O1iii—Nd1—O577.64 (8)C1—C2—C3119.0 (3)
O4—Nd1—O5146.31 (7)C1—C2—H2120.5
O2i—Nd1—O5iv77.35 (8)C3—C2—H2120.5
O3ii—Nd1—O5iv138.97 (8)C2—C3—C4119.2 (3)
O1iii—Nd1—O5iv142.14 (8)C2—C3—H3120.4
O4—Nd1—O5iv77.63 (8)C4—C3—H3120.4
O5—Nd1—O5iv69.19 (8)C3—C4—C5117.8 (3)
O2i—Nd1—O5v150.20 (8)C3—C4—C7121.6 (3)
O3ii—Nd1—O5v69.18 (8)C5—C4—C7120.7 (3)
O1iii—Nd1—O5v87.76 (8)N1—C5—C4123.4 (3)
O4—Nd1—O5v122.15 (8)N1—C5—H5118.3
O5—Nd1—O5v68.94 (8)C4—C5—H5118.3
O5iv—Nd1—O5v96.63 (11)O3—C6—O4125.4 (3)
O2i—Nd1—N165.27 (8)O3—C6—C1116.8 (3)
O3ii—Nd1—N168.36 (8)O4—C6—C1117.8 (3)
O1iii—Nd1—N170.02 (8)O2—C7—O1125.7 (3)
O4—Nd1—N161.14 (8)O2—C7—C4116.5 (3)
O5—Nd1—N1136.65 (8)O1—C7—C4117.8 (3)
O5iv—Nd1—N1124.92 (8)C5—N1—C1117.8 (3)
O5v—Nd1—N1135.26 (8)C5—N1—Nd1125.8 (2)
O2i—Nd1—Nd1iv65.95 (6)C1—N1—Nd1116.4 (2)
O3ii—Nd1—Nd1iv160.68 (5)C7—O1—Nd1iii133.4 (2)
O1iii—Nd1—Nd1iv106.55 (6)C7—O2—Nd1vi142.0 (2)
O4—Nd1—Nd1iv110.13 (5)C6—O3—Nd1vii148.7 (2)
O5—Nd1—Nd1iv36.42 (5)C6—O4—Nd1126.1 (2)
O5iv—Nd1—Nd1iv35.97 (5)Nd1—O5—Nd1v108.00 (8)
O5v—Nd1—Nd1iv91.90 (6)Nd1—O5—Nd1iv107.49 (8)
N1—Nd1—Nd1iv130.94 (6)Nd1v—O5—Nd1iv130.61 (10)
O2i—Nd1—Nd1v114.28 (7)Nd1—O5—H1115 (3)
O3ii—Nd1—Nd1v96.13 (6)Nd1v—O5—H1104 (3)
O1iii—Nd1—Nd1v69.98 (5)Nd1iv—O5—H191 (3)
O4—Nd1—Nd1v155.32 (5)
Table 1

Selected bond lengths (Å)

Nd1—O2i2.395 (2)
Nd1—O3ii2.426 (2)
Nd1—O1iii2.452 (2)
Nd1—O42.480 (2)
Nd1—O52.482 (2)
Nd1—O5iv2.485 (2)
Nd1—O5v2.501 (2)
Nd1—N12.747 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  7 in total

1.  A series of three-dimensional lanthanide coordination polymers with rutile and unprecedented rutile-related topologies.

Authors:  Chao Qin; Xin-Long Wang; En-Bo Wang; Zhong-Min Su
Journal:  Inorg Chem       Date:  2005-10-03       Impact factor: 5.165

2.  New lanthanide hybrid as clustered infinite nanotunnel with 3D Ln-O-Ln framework and (3,4)-connected net.

Authors:  You-gui Huang; Ben-lai Wu; Da-qiang Yuan; Yan-qing Xu; Fei-long Jiang; Mao-chun Hong
Journal:  Inorg Chem       Date:  2007-02-19       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Hydrothermal synthesis, X-ray structure and complex magnetic behaviour of Ba4(C2O4)Cl2[[Fe(C2O4)(OH)]4].

Authors:  D J Price; S Tripp; A K Powell; P T Wood
Journal:  Chemistry       Date:  2001-01-05       Impact factor: 5.236

5.  Synthesis, structure, and luminescent properties of hybrid inorganic-organic framework materials formed by lead aromatic carboxylates: inorganic connectivity variation from 0D to 3D.

Authors:  Lei Zhang; Zhao-Ji Li; Qi-Pu Lin; Ye-Yan Qin; Jian Zhang; Pei-Xiu Yin; Jian-Kai Cheng; Yuan-Gen Yao
Journal:  Inorg Chem       Date:  2009-07-20       Impact factor: 5.165

6.  Poly[piperazinediium [aqua-bis(μ-pyridine-2,5-dicarboxyl-ato)zincate] dihydrate].

Authors:  Hossein Aghabozorg; Zohreh Derikvand; Andya Nemati; Zohreh Bahrami; Jafar Attar Gharamaleki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

7.  catena-Poly[[[diaqua-iron(II)]-μ-pyridine-2,5-dicarboxyl-ato-[tetra-aqua-iron(II)]-μ-pyridine-2,5-dicarboxyl-ato] tetra-hydrate].

Authors:  Hai-Yun Xu; Huai-Ling Ma; Mao-Tian Xu; Wen-Xian Zhao; Bao-Guo Guo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-25
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.