Literature DB >> 22589992

Absolute configuration of (1S,2S)-3-methyl-2-phenyl-2,3-dihydro-thia-zolo[2,3-b]quinazolin-5-one.

Mostafa M Ghorab, Mansour S Al-Said, Maged S Abdel-Kader, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

The absolute structure of the molecule in the crystal of the title compound, C(17)H(14)N(2)OS, was determined by the refinement of the Flack parameter to 0.0 (2) based on 1011 Friedel pairs. The quinazoline ring is essentially planar, with a maximum deviation of 0.037 (2) Å. The thia-zole ring is distorted from planarity [maximum deviation = 0.168 (2) Å] and adopts a slightly twisted envelope conformation, with the C atom as the flap atom. The central thia-zole ring makes dihedral angles of 7.01 (8) and 76.80 (10)° with the quinazoline and phenyl rings, respectively. The corresponding angle between the quinazoline and phenyl rings is 3.74 (9)°. In the crystal, there are no classical hydrogen bonds but stabilization is provided by weak C-H⋯π inter-actions, involving the centroids of the phenyl rings.

Entities:  

Year:  2012        PMID: 22589992      PMCID: PMC3343911          DOI: 10.1107/S160053681200832X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of quinazoline derivatives, see: Ghorab et al. (2010a ▶,b ▶,c ▶). For related crystal structures, see: Al-Salahi et al. (2012 ▶); Priya et al. (2011 ▶); Liu et al. (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H14N2OS M = 294.36 Orthorhombic, a = 8.4865 (1) Å b = 10.0846 (2) Å c = 16.8290 (3) Å V = 1440.28 (4) Å3 Z = 4 Cu Kα radiation μ = 1.99 mm−1 T = 296 K 0.96 × 0.64 × 0.51 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.251, T max = 0.431 8654 measured reflections 2637 independent reflections 2521 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.109 S = 1.08 2637 reflections 192 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), with 1011 Friedel pairs Flack parameter: 0.00 (2) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681200832X/nk2145sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200832X/nk2145Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14N2OSF(000) = 616
Mr = 294.36Dx = 1.358 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 4079 reflections
a = 8.4865 (1) Åθ = 4.4–71.7°
b = 10.0846 (2) ŵ = 1.99 mm1
c = 16.8290 (3) ÅT = 296 K
V = 1440.28 (4) Å3Block, colourless
Z = 40.96 × 0.64 × 0.51 mm
Bruker SMART APEXII CCD diffractometer2637 independent reflections
Radiation source: fine-focus sealed tube2521 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
φ and ω scansθmax = 71.9°, θmin = 5.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.251, Tmax = 0.431k = −8→12
8654 measured reflectionsl = −20→20
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.043w = 1/[σ2(Fo2) + (0.0729P)2 + 0.0628P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.109(Δ/σ)max = 0.001
S = 1.08Δρmax = 0.22 e Å3
2637 reflectionsΔρmin = −0.23 e Å3
192 parametersExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.107 (4)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), with 1011 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.00 (2)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.93740 (6)0.77405 (8)0.26159 (3)0.0835 (3)
N10.84292 (17)0.75544 (18)0.40678 (9)0.0558 (4)
N20.99073 (19)0.57264 (18)0.35894 (9)0.0585 (4)
O10.7394 (3)0.7625 (3)0.53134 (11)0.0983 (7)
C30.8142 (2)0.7024 (3)0.48182 (12)0.0654 (5)
C100.9264 (2)0.6865 (2)0.35080 (10)0.0540 (4)
C90.9715 (2)0.51345 (19)0.43270 (11)0.0561 (4)
C120.5242 (2)0.8021 (2)0.28662 (15)0.0693 (6)
H12A0.54790.74960.33040.083*
C110.6379 (2)0.88563 (18)0.25601 (12)0.0556 (4)
C40.8811 (2)0.5710 (2)0.49297 (11)0.0598 (5)
C130.3752 (3)0.7954 (3)0.25291 (17)0.0743 (6)
H13A0.29930.73960.27460.089*
C50.8607 (3)0.5028 (3)0.56509 (14)0.0774 (6)
H5A0.80070.54050.60550.093*
C140.3400 (3)0.8704 (2)0.18807 (17)0.0730 (6)
H14A0.23960.86700.16600.088*
C160.6023 (3)0.9594 (2)0.18898 (14)0.0633 (5)
H16A0.67831.01440.16660.076*
C60.9290 (4)0.3807 (3)0.57612 (17)0.0875 (8)
H6A0.91310.33500.62350.105*
C10.7973 (2)0.9010 (2)0.29489 (15)0.0659 (5)
H1A0.83960.98780.27980.079*
C150.4533 (3)0.9515 (2)0.15507 (14)0.0723 (6)
H15A0.42991.00100.11000.087*
C81.0433 (3)0.3896 (2)0.44566 (15)0.0744 (6)
H8A1.10520.35170.40610.089*
C20.7980 (2)0.8926 (2)0.38635 (14)0.0659 (5)
H2B0.69110.90940.40600.079*
C170.9107 (4)0.9910 (3)0.4252 (3)0.1039 (11)
H17A0.90700.98060.48180.156*
H17C0.88021.07970.41130.156*
H17D1.01600.97460.40670.156*
C71.0225 (4)0.3247 (3)0.51644 (19)0.0874 (8)
H7A1.07070.24310.52480.105*
U11U22U33U12U13U23
S10.0541 (3)0.1285 (5)0.0680 (3)0.0297 (3)0.0168 (2)0.0362 (3)
N10.0436 (7)0.0702 (9)0.0535 (8)0.0037 (6)−0.0037 (6)−0.0028 (7)
N20.0529 (8)0.0726 (10)0.0500 (7)0.0055 (7)−0.0055 (6)−0.0051 (7)
O10.1001 (14)0.1344 (18)0.0602 (9)0.0463 (14)0.0130 (8)−0.0049 (10)
C30.0512 (9)0.0952 (14)0.0497 (9)0.0092 (10)−0.0022 (8)−0.0043 (9)
C100.0393 (7)0.0739 (11)0.0490 (8)0.0004 (7)−0.0014 (7)0.0020 (7)
C90.0526 (9)0.0635 (10)0.0522 (9)−0.0071 (7)−0.0092 (7)−0.0034 (7)
C120.0519 (10)0.0741 (12)0.0820 (13)−0.0033 (8)−0.0106 (9)0.0223 (10)
C110.0469 (8)0.0523 (8)0.0675 (10)0.0055 (6)−0.0032 (8)0.0022 (8)
C40.0472 (8)0.0815 (12)0.0507 (9)−0.0083 (8)−0.0059 (7)0.0028 (8)
C130.0491 (10)0.0816 (13)0.0923 (16)−0.0055 (9)−0.0084 (10)0.0104 (12)
C50.0615 (12)0.1126 (18)0.0579 (11)−0.0103 (12)−0.0015 (9)0.0107 (12)
C140.0527 (10)0.0768 (13)0.0896 (15)0.0096 (9)−0.0178 (11)−0.0050 (11)
C160.0634 (11)0.0560 (9)0.0705 (11)0.0068 (8)−0.0005 (9)0.0064 (8)
C60.0857 (16)0.0934 (17)0.0833 (15)−0.0174 (14)−0.0132 (14)0.0307 (13)
C10.0460 (9)0.0666 (10)0.0850 (14)−0.0021 (8)−0.0040 (9)0.0180 (10)
C150.0745 (13)0.0697 (11)0.0727 (12)0.0158 (10)−0.0151 (10)0.0056 (9)
C80.0880 (15)0.0662 (11)0.0691 (11)0.0015 (11)−0.0152 (12)−0.0065 (9)
C20.0505 (9)0.0676 (11)0.0795 (13)0.0061 (8)−0.0114 (9)−0.0047 (10)
C170.0876 (19)0.0806 (16)0.143 (3)−0.0012 (14)−0.038 (2)−0.0195 (18)
C70.107 (2)0.0709 (13)0.0845 (15)−0.0052 (13)−0.0216 (15)0.0107 (11)
S1—C101.7439 (18)C5—C61.374 (5)
S1—C11.835 (2)C5—H5A0.9300
N1—C101.368 (3)C14—C151.379 (4)
N1—C31.393 (3)C14—H14A0.9300
N1—C21.475 (3)C16—C151.390 (3)
N2—C101.279 (3)C16—H16A0.9300
N2—C91.387 (3)C6—C71.399 (5)
O1—C31.211 (3)C6—H6A0.9300
C3—C41.454 (3)C1—C21.542 (3)
C9—C41.398 (3)C1—H1A0.9800
C9—C81.406 (3)C15—H15A0.9300
C12—C111.380 (3)C8—C71.371 (4)
C12—C131.388 (3)C8—H8A0.9300
C12—H12A0.9300C2—C171.526 (3)
C11—C161.385 (3)C2—H2B0.9800
C11—C11.511 (3)C17—H17A0.9600
C4—C51.406 (3)C17—H17C0.9600
C13—C141.361 (4)C17—H17D0.9600
C13—H13A0.9300C7—H7A0.9300
C10—S1—C193.18 (10)C11—C16—H16A119.9
C10—N1—C3121.33 (18)C15—C16—H16A119.9
C10—N1—C2116.71 (17)C5—C6—C7120.3 (2)
C3—N1—C2121.72 (18)C5—C6—H6A119.9
C10—N2—C9115.61 (16)C7—C6—H6A119.9
O1—C3—N1121.6 (2)C11—C1—C2115.45 (17)
O1—C3—C4124.9 (2)C11—C1—S1112.12 (16)
N1—C3—C4113.49 (18)C2—C1—S1105.33 (14)
N2—C10—N1127.10 (17)C11—C1—H1A107.9
N2—C10—S1121.59 (14)C2—C1—H1A107.9
N1—C10—S1111.31 (14)S1—C1—H1A107.9
N2—C9—C4122.34 (19)C14—C15—C16120.2 (2)
N2—C9—C8118.0 (2)C14—C15—H15A119.9
C4—C9—C8119.6 (2)C16—C15—H15A119.9
C11—C12—C13120.9 (2)C7—C8—C9120.2 (3)
C11—C12—H12A119.5C7—C8—H8A119.9
C13—C12—H12A119.5C9—C8—H8A119.9
C12—C11—C16118.68 (18)N1—C2—C17110.36 (19)
C12—C11—C1121.78 (18)N1—C2—C1106.58 (17)
C16—C11—C1119.52 (18)C17—C2—C1113.2 (2)
C9—C4—C5119.4 (2)N1—C2—H2B108.9
C9—C4—C3119.94 (18)C17—C2—H2B108.9
C5—C4—C3120.6 (2)C1—C2—H2B108.9
C14—C13—C12120.0 (2)C2—C17—H17A109.5
C14—C13—H13A120.0C2—C17—H17C109.5
C12—C13—H13A120.0H17A—C17—H17C109.5
C6—C5—C4120.2 (3)C2—C17—H17D109.5
C6—C5—H5A119.9H17A—C17—H17D109.5
C4—C5—H5A119.9H17C—C17—H17D109.5
C13—C14—C15120.0 (2)C8—C7—C6120.3 (3)
C13—C14—H14A120.0C8—C7—H7A119.8
C15—C14—H14A120.0C6—C7—H7A119.8
C11—C16—C15120.1 (2)
C10—N1—C3—O1−179.4 (2)C3—C4—C5—C6−177.7 (2)
C2—N1—C3—O16.4 (3)C12—C13—C14—C151.1 (4)
C10—N1—C3—C40.1 (3)C12—C11—C16—C151.8 (3)
C2—N1—C3—C4−174.12 (17)C1—C11—C16—C15−176.6 (2)
C9—N2—C10—N10.6 (3)C4—C5—C6—C71.6 (4)
C9—N2—C10—S1−179.34 (13)C12—C11—C1—C2−34.8 (3)
C3—N1—C10—N2−2.2 (3)C16—C11—C1—C2143.6 (2)
C2—N1—C10—N2172.28 (18)C12—C11—C1—S185.8 (2)
C3—N1—C10—S1177.70 (15)C16—C11—C1—S1−95.81 (19)
C2—N1—C10—S1−7.8 (2)C10—S1—C1—C11−105.81 (15)
C1—S1—C10—N2171.57 (16)C10—S1—C1—C220.52 (15)
C1—S1—C10—N1−8.37 (15)C13—C14—C15—C16−1.6 (4)
C10—N2—C9—C43.2 (3)C11—C16—C15—C140.1 (3)
C10—N2—C9—C8−178.35 (18)N2—C9—C8—C7−177.4 (2)
C13—C12—C11—C16−2.4 (4)C4—C9—C8—C71.2 (3)
C13—C12—C11—C1176.0 (2)C10—N1—C2—C17−99.9 (3)
N2—C9—C4—C5177.15 (19)C3—N1—C2—C1774.6 (3)
C8—C9—C4—C5−1.3 (3)C10—N1—C2—C123.4 (2)
N2—C9—C4—C3−5.2 (3)C3—N1—C2—C1−162.12 (17)
C8—C9—C4—C3176.33 (19)C11—C1—C2—N197.6 (2)
O1—C3—C4—C9−177.2 (2)S1—C1—C2—N1−26.69 (19)
N1—C3—C4—C93.3 (3)C11—C1—C2—C17−140.9 (2)
O1—C3—C4—C50.4 (4)S1—C1—C2—C1794.8 (2)
N1—C3—C4—C5−179.06 (19)C9—C8—C7—C60.3 (4)
C11—C12—C13—C140.9 (4)C5—C6—C7—C8−1.7 (4)
C9—C4—C5—C60.0 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2B···Cg3i0.982.913.824 (2)155
C6—H6A···Cg4ii0.932.813.637 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 and Cg4 are the centroids of the C4–C9 and C11–C16 phenyl rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2BCg3i0.982.913.824 (2)155
C6—H6ACg4ii0.932.813.637 (3)146

Symmetry codes: (i) ; (ii) .

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