Literature DB >> 22589971

N-[Amino(imino)methyl]uronium tetrafluoroborate.

Michaela Fridrichová, Jan Fábry, Karla Fejfarová, Radmila Krupková, Přemysl Vaněk.   

Abstract

In the title compound, C(2)H(7)N(4)O(+)·BF(4) (-), inter-molecular N-H⋯O hydrogen bonds connect the cations into chains parallel to the c axis, with graph-set motif C(4). These chains are in turn connected into a three-dimensional network by inter-molecular N-H⋯F hydrogen bonds. The B-F distances distances in the anion are not equal.

Entities:  

Year:  2012        PMID: 22589971      PMCID: PMC3344062          DOI: 10.1107/S1600536812010665

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the non-centrosymmetric structure, containing a 2-carbamoylguanidinium cation, that is promising for applications in non-linear optics, see: Fridrichová, Němec, Císařová & Chvostová (2010 ▶); Fridrichová, Němec, Císařová & Němec (2010 ▶); Kroupa & Fridrichová (2011 ▶). For related stuctures and a detailed description of the preparation of the title cation, see: Fábry et al. (2012a ▶,b ▶,c ▶). For structures with rather strong N—H⋯F hydrogen bonds, see: Ali et al. (2007 ▶); Bardaji et al. (2002 ▶); Blue et al. (2003 ▶); Byrne et al. (2008 ▶); Zhao & Betley (2011 ▶). For information on fluorine as acceptor in organic hydrogen bonds, see: Dunitz & Taylor (1997 ▶). For hydrogen-bond classification and graph-set motifs, see: Desiraju & Steiner (1999 ▶); Etter et al. (1990 ▶). For a description of the Cambridge Structural Database (CSD), see: Allen (2002 ▶). For the extinction correction, see: Becker & Coppens (1974 ▶).

Experimental

Crystal data

C2H7N4O+·BF4 M = 189.9 Monoclinic, a = 7.8409 (3) Å b = 9.6373 (4) Å c = 9.5199 (4) Å β = 105.689 (3)° V = 692.57 (5) Å3 Z = 4 Cu Kα radiation μ = 1.86 mm−1 T = 120 K 0.51 × 0.30 × 0.17 mm

Data collection

Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.534, T max = 0.733 7265 measured reflections 1230 independent reflections 1189 reflections with I > 3σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.081 S = 1.74 1230 reflections 131 parameters Only H-atom coordinates refined Δρmax = 0.13 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1997 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2007 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812010665/lh5427sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010665/lh5427Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812010665/lh5427Isup4.smi Supplementary material file. DOI: 10.1107/S1600536812010665/lh5427Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H7N4O+·BF4F(000) = 384
Mr = 189.9Dx = 1.821 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ybcCell parameters from 5746 reflections
a = 7.8409 (3) Åθ = 4.6–67°
b = 9.6373 (4) ŵ = 1.86 mm1
c = 9.5199 (4) ÅT = 120 K
β = 105.689 (3)°Irregular shape, colourless
V = 692.57 (5) Å30.51 × 0.30 × 0.17 mm
Z = 4
Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector1230 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1189 reflections with I > 3σ(I)
Mirror monochromatorRint = 0.020
Detector resolution: 10.3784 pixels mm-1θmax = 67.1°, θmin = 5.9°
Rotation method data acquisition using ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→11
Tmin = 0.534, Tmax = 0.733l = −11→10
7265 measured reflections
Refinement on F2Only H-atom coordinates refined
R[F2 > 2σ(F2)] = 0.024Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
wR(F2) = 0.081(Δ/σ)max = 0.006
S = 1.74Δρmax = 0.13 e Å3
1230 reflectionsΔρmin = −0.15 e Å3
131 parametersExtinction correction: B-C type 1 Lorentzian isotropic (Becker & Coppens, 1974)
0 restraintsExtinction coefficient: 1600 (300)
7 constraints
Experimental. CrysAlisPro (Agilent Technologies, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement. The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
B10.66007 (15)0.44707 (12)0.78507 (13)0.0190 (4)
F10.54351 (8)0.40448 (7)0.86358 (7)0.0295 (3)
F20.83067 (8)0.45670 (7)0.87576 (7)0.0254 (2)
F30.65411 (9)0.35814 (7)0.67085 (7)0.0304 (3)
F40.60448 (8)0.58120 (6)0.72842 (7)0.0242 (2)
N11.29213 (13)0.25144 (10)0.99490 (11)0.0230 (3)
H1n11.3573 (19)0.2796 (14)1.0783 (17)0.0276*
H2n11.3380 (19)0.2346 (15)0.9280 (17)0.0276*
C11.12706 (13)0.21215 (10)0.98698 (11)0.0180 (3)
O11.05904 (10)0.21991 (8)1.08889 (8)0.0212 (3)
N21.03592 (11)0.16014 (9)0.85077 (9)0.0183 (3)
H1n21.0786 (18)0.1719 (14)0.7805 (17)0.022*
C20.86829 (13)0.10769 (10)0.81483 (11)0.0179 (3)
N30.77643 (12)0.10138 (10)0.91111 (10)0.0211 (3)
H1n30.666 (2)0.0746 (14)0.8846 (15)0.0253*
H2n30.8179 (18)0.1386 (15)0.9944 (17)0.0253*
N40.80477 (13)0.06150 (10)0.68075 (11)0.0221 (3)
H1n40.702 (2)0.0267 (15)0.6529 (15)0.0265*
H2n40.8632 (19)0.0642 (14)0.6222 (16)0.0265*
U11U22U33U12U13U23
B10.0181 (6)0.0208 (6)0.0181 (6)0.0008 (4)0.0052 (5)0.0009 (4)
F10.0255 (4)0.0333 (4)0.0341 (4)0.0011 (3)0.0155 (3)0.0082 (3)
F20.0189 (4)0.0318 (4)0.0229 (4)0.0015 (2)0.0015 (3)0.0031 (2)
F30.0343 (4)0.0309 (4)0.0255 (4)0.0008 (3)0.0074 (3)−0.0079 (3)
F40.0228 (4)0.0227 (4)0.0254 (4)0.0021 (2)0.0033 (3)0.0046 (2)
N10.0199 (5)0.0296 (5)0.0203 (5)−0.0050 (4)0.0070 (4)−0.0057 (4)
C10.0203 (5)0.0156 (5)0.0177 (5)0.0015 (4)0.0048 (4)0.0008 (3)
O10.0222 (4)0.0257 (4)0.0165 (4)−0.0024 (3)0.0065 (3)−0.0025 (3)
N20.0188 (5)0.0231 (5)0.0141 (5)−0.0012 (3)0.0060 (4)0.0003 (3)
C20.0181 (5)0.0162 (5)0.0183 (5)0.0030 (4)0.0031 (4)0.0021 (4)
N30.0174 (5)0.0262 (5)0.0196 (5)−0.0025 (3)0.0052 (4)−0.0031 (4)
N40.0202 (5)0.0273 (5)0.0178 (5)−0.0020 (4)0.0038 (4)−0.0029 (4)
B1—F11.3899 (15)C2—N41.3159 (14)
B1—F21.3852 (12)N1—H1n10.863 (14)
B1—F31.3754 (14)N1—H2n10.828 (18)
B1—F41.4229 (13)N2—H1n20.833 (17)
N1—C11.3309 (15)N3—H1n30.873 (15)
C1—O11.2293 (14)N3—H2n30.850 (15)
C1—N21.3936 (12)N4—H1n40.844 (15)
N2—C21.3627 (13)N4—H2n40.812 (17)
C2—N31.3113 (16)
F1—B1—F2110.44 (9)N3—C2—N4121.80 (10)
F1—B1—F3110.76 (9)H1n1—N1—H2n1119.8 (15)
F1—B1—F4107.07 (9)H1n3—N3—H2n3119.6 (15)
F2—B1—F3110.80 (9)H1n4—N4—H2n4117.5 (14)
F2—B1—F4108.70 (8)H1n1—N1—C1117.8 (11)
F3—B1—F4108.97 (9)H2n1—N1—C1121.3 (9)
N1—C1—O1124.11 (9)C1—N2—H1n2118.8 (9)
N1—C1—N2113.66 (10)H1n2—N2—C2114.7 (9)
O1—C1—N2122.24 (9)C2—N3—H1n3120.0 (10)
C1—N2—C2125.74 (10)C2—N3—H2n3119.2 (11)
N2—C2—N3121.10 (9)C2—N4—H1n4121.2 (11)
N2—C2—N4117.09 (11)C2—N4—H2n4121.3 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1n1···F4i0.863 (14)2.231 (16)3.0069 (12)149.5 (13)
N1—H2n1···F4ii0.828 (18)2.230 (16)2.9666 (13)148.5 (14)
N2—H1n2···O1iii0.833 (17)2.070 (15)2.7981 (12)145.7 (12)
N3—H1n3···F4iv0.873 (15)2.104 (14)2.9286 (11)157.4 (13)
N3—H2n3···F3v0.850 (15)2.375 (17)2.9102 (13)121.5 (12)
N3—H2n3···O10.850 (15)2.020 (13)2.6555 (11)130.9 (15)
N4—H1n4···F1iv0.844 (15)2.229 (16)3.0499 (12)164.5 (13)
N4—H2n4···F2iii0.812 (17)2.299 (15)2.9700 (13)140.4 (12)
N1—H2n1···F1vi0.828 (18)2.488 (16)2.9927 (13)120.4 (12)
N3—H2n3···F3v0.850 (15)2.375 (17)2.9102 (13)121.5 (12)
N4—H2n4···O1iii0.812 (17)2.655 (15)3.1813 (13)123.9 (11)
Table 1

Selected bond lengths (Å)

B1—F11.3899 (15)
B1—F21.3852 (12)
B1—F31.3754 (14)
B1—F41.4229 (13)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n1⋯F4i0.863 (14)2.231 (16)3.0069 (12)149.5 (13)
N1—H2n1⋯F4ii0.828 (18)2.230 (16)2.9666 (13)148.5 (14)
N2—H1n2⋯O1iii0.833 (17)2.070 (15)2.7981 (12)145.7 (12)
N3—H1n3⋯F4iv0.873 (15)2.104 (14)2.9286 (11)157.4 (13)
N3—H2n3⋯F3v0.850 (15)2.375 (17)2.9102 (13)121.5 (12)
N3—H2n3⋯O10.850 (15)2.020 (13)2.6555 (11)130.9 (15)
N4—H1n4⋯F1iv0.844 (15)2.229 (16)3.0499 (12)164.5 (13)
N4—H2n4⋯F2iii0.812 (17)2.299 (15)2.9700 (13)140.4 (12)
N1—H2n1⋯F1vi0.828 (18)2.488 (16)2.9927 (13)120.4 (12)
N3—H2n3⋯F3v0.850 (15)2.375 (17)2.9102 (13)121.5 (12)
N4—H2n4⋯O1iii0.812 (17)2.655 (15)3.1813 (13)123.9 (11)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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