Literature DB >> 22589902

(E)-4-Amino-N-(1,2-dihydro-pyridin-2-yl-idene)benzene-sulfonamide nitro-methane monosolvate.

Mostafa M Ghorab, Mansour S Al-Said, Hazem A Ghabbour, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title solvate, C(11)H(11)N(3)O(2)S·CH(3)NO(2), the dihedral angle between the benzene ring and the N-containing ring is 85.94 (11)°, and an approximate V shape arises for the sulfonamide mol-ecule. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds and weak C-H⋯O inter-actions link the sulfonamide mol-ecules into a three-dimensional network. The nitro-methane solvent mol-ecules are located in the inter-stitial sites in the sulfonamide network.

Entities:  

Year:  2012        PMID: 22589902      PMCID: PMC3343993          DOI: 10.1107/S1600536812009865

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of sulfonamide compounds, see: Ghorab et al. (2009 ▶);

Experimental

Crystal data

C11H11N3O2S·CH3NO2 M = 310.34 Orthorhombic, a = 10.5179 (3) Å b = 12.4857 (3) Å c = 22.7237 (6) Å V = 2984.15 (14) Å3 Z = 8 Cu Kα radiation μ = 2.14 mm−1 T = 296 K 0.54 × 0.43 × 0.31 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.392, T max = 0.554 14569 measured reflections 2799 independent reflections 2386 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.144 S = 1.07 2799 reflections 196 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009865/hb6660sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009865/hb6660Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009865/hb6660Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H11N3O2S·CH3NO2F(000) = 1296
Mr = 310.34Dx = 1.381 Mg m3
Orthorhombic, PbcaCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2abCell parameters from 2799 reflections
a = 10.5179 (3) Åθ = 5.7–71.6°
b = 12.4857 (3) ŵ = 2.14 mm1
c = 22.7237 (6) ÅT = 296 K
V = 2984.15 (14) Å3Block, pink
Z = 80.54 × 0.43 × 0.31 mm
Bruker SMART APEXII CCD diffractometer2799 independent reflections
Radiation source: fine-focus sealed tube2386 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.062
φ and ω scansθmax = 71.6°, θmin = 5.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→10
Tmin = 0.392, Tmax = 0.554k = −15→15
14569 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.144w = 1/[σ2(Fo2) + (0.0843P)2 + 0.5181P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2799 reflectionsΔρmax = 0.25 e Å3
196 parametersΔρmin = −0.42 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0022 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.03202 (5)0.52678 (4)0.13912 (2)0.0537 (2)
O1−0.04470 (16)0.62229 (11)0.13586 (7)0.0664 (4)
O20.14832 (16)0.53613 (12)0.17203 (7)0.0696 (4)
N10.05275 (16)0.49231 (13)0.07212 (8)0.0549 (4)
N2−0.27661 (19)0.18108 (17)0.24298 (10)0.0806 (6)
H1N2−0.24080.14170.26990.097*
H2N2−0.33640.15340.22130.097*
N30.13565 (17)0.39072 (14)−0.00078 (8)0.0587 (4)
H1N30.082 (2)0.4266 (17)−0.0216 (10)0.054 (6)*
C1−0.05963 (18)0.42658 (14)0.17206 (8)0.0499 (4)
C2−0.1786 (2)0.40208 (16)0.14851 (9)0.0547 (5)
H2A−0.20930.44050.11650.066*
C3−0.2504 (2)0.32171 (17)0.17237 (9)0.0576 (5)
H3A−0.32990.30630.15650.069*
C4−0.20549 (19)0.26212 (16)0.22053 (9)0.0567 (5)
C5−0.0891 (2)0.29027 (18)0.24482 (9)0.0628 (5)
H5A−0.05990.25420.27800.075*
C6−0.0163 (2)0.37042 (17)0.22084 (9)0.0576 (5)
H6A0.06230.38710.23730.069*
C70.13465 (18)0.41433 (15)0.05728 (9)0.0530 (4)
C80.2136 (2)0.3168 (2)−0.02582 (12)0.0741 (6)
H8A0.21040.3049−0.06620.089*
C90.2955 (3)0.2609 (2)0.00786 (14)0.0855 (8)
H9A0.34980.2106−0.00880.103*
C100.2968 (3)0.2799 (2)0.06752 (14)0.0857 (8)
H10A0.35230.24130.09130.103*
C110.2185 (2)0.35419 (18)0.09265 (11)0.0708 (6)
H11A0.22050.36510.13310.085*
O30.0798 (3)0.0856 (2)0.04675 (11)0.1239 (9)
O4−0.0699 (2)−0.0317 (2)0.06434 (11)0.1120 (8)
N40.0045 (3)0.0378 (3)0.08153 (15)0.1093 (9)
C120.0102 (4)0.0684 (4)0.14512 (17)0.1265 (14)
H12A−0.07220.09210.15780.190*
H12B0.07060.12530.15030.190*
H12C0.03580.00760.16810.190*
U11U22U33U12U13U23
S10.0566 (4)0.0492 (3)0.0551 (3)−0.00291 (18)−0.00473 (19)−0.00030 (17)
O10.0793 (11)0.0487 (8)0.0712 (10)0.0061 (7)0.0029 (7)0.0001 (6)
O20.0653 (10)0.0710 (9)0.0724 (10)−0.0133 (7)−0.0152 (8)−0.0063 (7)
N10.0541 (9)0.0559 (8)0.0546 (9)0.0045 (7)−0.0008 (7)0.0066 (7)
N20.0624 (12)0.0869 (13)0.0923 (15)−0.0077 (10)−0.0068 (10)0.0371 (11)
N30.0544 (10)0.0631 (9)0.0587 (10)0.0083 (8)−0.0006 (8)0.0047 (8)
C10.0513 (10)0.0518 (9)0.0464 (9)0.0002 (8)−0.0059 (7)−0.0004 (7)
C20.0549 (11)0.0588 (10)0.0505 (10)0.0017 (8)−0.0082 (8)0.0071 (8)
C30.0479 (10)0.0659 (11)0.0589 (11)−0.0003 (8)−0.0077 (8)0.0038 (9)
C40.0494 (10)0.0626 (10)0.0580 (11)0.0039 (9)0.0040 (8)0.0082 (8)
C50.0618 (13)0.0740 (12)0.0525 (10)0.0043 (10)−0.0075 (9)0.0153 (9)
C60.0546 (11)0.0663 (11)0.0518 (11)−0.0017 (9)−0.0110 (8)0.0050 (8)
C70.0476 (10)0.0520 (9)0.0595 (11)−0.0021 (8)−0.0016 (8)0.0072 (8)
C80.0688 (14)0.0791 (14)0.0744 (14)0.0156 (12)0.0052 (11)−0.0043 (11)
C90.0784 (17)0.0795 (15)0.0985 (19)0.0293 (14)0.0006 (14)−0.0035 (14)
C100.0832 (17)0.0737 (14)0.100 (2)0.0258 (13)−0.0213 (15)0.0060 (13)
C110.0739 (15)0.0672 (12)0.0712 (14)0.0110 (11)−0.0150 (11)0.0046 (10)
O30.1205 (18)0.148 (2)0.1029 (17)−0.0638 (17)0.0212 (14)−0.0115 (15)
O40.0996 (15)0.141 (2)0.0955 (15)−0.0502 (15)0.0236 (13)−0.0211 (13)
N40.0867 (17)0.139 (2)0.103 (2)−0.0042 (17)0.0109 (16)−0.0112 (17)
C120.122 (3)0.169 (4)0.089 (2)−0.013 (3)0.004 (2)−0.033 (2)
S1—O21.4384 (16)C5—C61.373 (3)
S1—O11.4418 (15)C5—H5A0.9300
S1—N11.5971 (18)C6—H6A0.9300
S1—C11.7477 (19)C7—C111.410 (3)
N1—C71.343 (3)C8—C91.347 (4)
N2—C41.358 (3)C8—H8A0.9300
N2—H1N20.8700C9—C101.377 (4)
N2—H2N20.8699C9—H9A0.9300
N3—C71.352 (3)C10—C111.365 (4)
N3—C81.359 (3)C10—H10A0.9300
N3—H1N30.86 (2)C11—H11A0.9300
C1—C61.389 (3)O3—N41.268 (4)
C1—C21.395 (3)O4—N41.232 (4)
C2—C31.368 (3)N4—C121.496 (5)
C2—H2A0.9300C12—H12A0.9600
C3—C41.405 (3)C12—H12B0.9600
C3—H3A0.9300C12—H12C0.9600
C4—C51.388 (3)
O2—S1—O1115.82 (10)C5—C6—C1120.10 (19)
O2—S1—N1113.66 (10)C5—C6—H6A119.9
O1—S1—N1104.49 (9)C1—C6—H6A119.9
O2—S1—C1107.73 (10)N1—C7—N3114.09 (17)
O1—S1—C1107.78 (9)N1—C7—C11130.1 (2)
N1—S1—C1106.90 (9)N3—C7—C11115.81 (19)
C7—N1—S1121.49 (14)C9—C8—N3120.0 (2)
C4—N2—H1N2116.5C9—C8—H8A120.0
C4—N2—H2N2118.8N3—C8—H8A120.0
H1N2—N2—H2N2119.1C8—C9—C10118.4 (2)
C7—N3—C8124.15 (19)C8—C9—H9A120.8
C7—N3—H1N3114.7 (15)C10—C9—H9A120.8
C8—N3—H1N3121.1 (16)C11—C10—C9121.5 (2)
C6—C1—C2119.35 (18)C11—C10—H10A119.2
C6—C1—S1121.47 (15)C9—C10—H10A119.2
C2—C1—S1119.17 (15)C10—C11—C7120.0 (2)
C3—C2—C1120.26 (18)C10—C11—H11A120.0
C3—C2—H2A119.9C7—C11—H11A120.0
C1—C2—H2A119.9O4—N4—O3122.0 (3)
C2—C3—C4120.77 (19)O4—N4—C12120.8 (3)
C2—C3—H3A119.6O3—N4—C12117.2 (3)
C4—C3—H3A119.6N4—C12—H12A109.5
N2—C4—C5121.67 (19)N4—C12—H12B109.5
N2—C4—C3120.14 (19)H12A—C12—H12B109.5
C5—C4—C3118.18 (19)N4—C12—H12C109.5
C6—C5—C4121.24 (18)H12A—C12—H12C109.5
C6—C5—H5A119.4H12B—C12—H12C109.5
C4—C5—H5A119.4
O2—S1—N1—C743.60 (19)C3—C4—C5—C6−3.3 (3)
O1—S1—N1—C7170.79 (16)C4—C5—C6—C11.3 (3)
C1—S1—N1—C7−75.12 (17)C2—C1—C6—C51.2 (3)
O2—S1—C1—C6−0.9 (2)S1—C1—C6—C5−178.33 (17)
O1—S1—C1—C6−126.50 (18)S1—N1—C7—N3176.39 (14)
N1—S1—C1—C6121.65 (17)S1—N1—C7—C11−3.6 (3)
O2—S1—C1—C2179.59 (16)C8—N3—C7—N1178.0 (2)
O1—S1—C1—C253.96 (18)C8—N3—C7—C11−2.0 (3)
N1—S1—C1—C2−57.89 (18)C7—N3—C8—C90.8 (4)
C6—C1—C2—C3−1.6 (3)N3—C8—C9—C100.6 (4)
S1—C1—C2—C3177.94 (16)C8—C9—C10—C11−0.6 (5)
C1—C2—C3—C4−0.5 (3)C9—C10—C11—C7−0.7 (4)
C2—C3—C4—N2−178.6 (2)N1—C7—C11—C10−178.1 (2)
C2—C3—C4—C52.9 (3)N3—C7—C11—C101.9 (3)
N2—C4—C5—C6178.2 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O2i0.872.102.971 (3)174
N2—H2N2···O1ii0.872.343.162 (3)157
N3—H1N3···N1iii0.86 (2)2.09 (2)2.948 (2)178 (2)
C8—H8A···O1iii0.932.523.160 (3)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O2i0.872.102.971 (3)174
N2—H2N2⋯O1ii0.872.343.162 (3)157
N3—H1N3⋯N1iii0.86 (2)2.09 (2)2.948 (2)178 (2)
C8—H8A⋯O1iii0.932.523.160 (3)126

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some new pyrazolo[3,4-d]pyrimidine derivatives of expected anticancer and radioprotective activity.

Authors:  Mostafa M Ghorab; Fatma A Ragab; Saleh I Alqasoumi; Ahmed M Alafeefy; Sarah A Aboulmagd
Journal:  Eur J Med Chem       Date:  2009-09-30       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.