Literature DB >> 22589870

catena-Poly[(chloridozinc)-μ-5-(1-methyl-1H-benzimidazol-2-yl-κN(3))-1,2,3-triazol-1-ido-κ(2)N(1):N(3)].

Chen-Guang Sun1, Ji-Rong Song.   

Abstract

In the title complex, [Zn(C(10)H(8)N(5))Cl](n), the Zn(II) ion is four-coordinated by one Cl atom and three N atoms from two in situ-generated deprotonated 5-(1-methyl-1H-benzimidazol-2-yl-κN(3))-1,2,3-triazol-1-ide ligands in a slightly distorted tetra-hedral geometry. The Zn(II) ions are bridged by the ligands, forming a helical chain along [001]. C-H⋯N and C-H⋯Cl hydrogen bonds and π-π inter-actions between the imidazole rings [centroid-centroid distance = 3.4244 (10) Å] assemble the chains into a three-dimensional supra-molecular network.

Entities:  

Year:  2012        PMID: 22589870      PMCID: PMC3343902          DOI: 10.1107/S1600536812012706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to hydro­thermal in situ reactions, see: Chen & Tong (2007 ▶); Zheng et al. (2009 ▶).

Experimental

Crystal data

[Zn(C10H8N5)Cl] M = 299.03 Tetragonal, a = 16.0822 (1) Å c = 9.0114 (2) Å V = 2330.68 (6) Å3 Z = 8 Mo Kα radiation μ = 2.32 mm−1 T = 153 K 0.25 × 0.20 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.595, T max = 0.801 6487 measured reflections 2511 independent reflections 2242 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.061 S = 1.05 2511 reflections 155 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, glogal. DOI: 10.1107/S1600536812012706/hy2526sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012706/hy2526Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C10H8N5)Cl]Dx = 1.704 Mg m3
Mr = 299.03Melting point: 178 K
Tetragonal, P42/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 4bcCell parameters from 3164 reflections
a = 16.0822 (1) Åθ = 2.8–27.6°
c = 9.0114 (2) ŵ = 2.32 mm1
V = 2330.68 (6) Å3T = 153 K
Z = 8Block, yellow
F(000) = 12000.25 × 0.20 × 0.10 mm
Bruker APEXII CCD diffractometer2511 independent reflections
Radiation source: fine-focus sealed tube2242 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 27.0°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −20→19
Tmin = 0.595, Tmax = 0.801k = −20→11
6487 measured reflectionsl = −11→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0248P)2 + 1.2538P] where P = (Fo2 + 2Fc2)/3
2511 reflections(Δ/σ)max = 0.001
155 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.885173 (13)0.359714 (13)0.23661 (2)0.01485 (8)
Cl10.98564 (3)0.32498 (3)0.08256 (5)0.02279 (12)
N40.86431 (9)0.22361 (10)0.63125 (16)0.0164 (3)
N10.89656 (9)0.46000 (9)0.37457 (16)0.0150 (3)
N30.87375 (10)0.29967 (9)0.43575 (16)0.0158 (3)
C30.88790 (11)0.43874 (11)0.51738 (19)0.0143 (4)
N20.88891 (9)0.50546 (9)0.60836 (16)0.0156 (3)
N50.86571 (10)0.22235 (10)0.48211 (16)0.0174 (3)
C90.89630 (11)0.57556 (11)0.5191 (2)0.0171 (4)
C100.87849 (13)0.50517 (12)0.7694 (2)0.0224 (4)
H10A0.82030.50440.79310.034*
H10B0.90350.55420.81060.034*
H10C0.90480.45670.81020.034*
C20.87783 (11)0.35173 (11)0.5545 (2)0.0146 (4)
C40.90207 (11)0.54619 (11)0.3728 (2)0.0164 (4)
C80.89762 (13)0.65991 (12)0.5530 (2)0.0242 (4)
H80.89370.67900.65010.029*
C10.87145 (12)0.30313 (11)0.6796 (2)0.0175 (4)
H10.87190.32120.77760.021*
C70.90506 (14)0.71385 (13)0.4342 (2)0.0294 (5)
H70.90490.77080.45190.035*
C60.91287 (14)0.68529 (13)0.2877 (2)0.0269 (5)
H60.91870.72370.21130.032*
C50.91205 (12)0.60159 (12)0.2543 (2)0.0207 (4)
H50.91790.58280.15730.025*
U11U22U33U12U13U23
Zn10.01681 (12)0.01827 (12)0.00945 (12)−0.00095 (8)−0.00090 (8)0.00094 (8)
Cl10.0229 (2)0.0266 (2)0.0189 (2)−0.0002 (2)0.00538 (18)−0.00207 (19)
N40.0217 (8)0.0182 (8)0.0093 (7)0.0009 (7)0.0008 (6)0.0005 (6)
N10.0151 (7)0.0163 (7)0.0136 (7)−0.0006 (6)−0.0009 (6)0.0009 (6)
N30.0202 (8)0.0158 (8)0.0115 (7)−0.0012 (6)−0.0002 (6)0.0006 (6)
C30.0120 (8)0.0170 (9)0.0139 (8)−0.0010 (7)−0.0004 (7)−0.0008 (7)
N20.0168 (7)0.0164 (7)0.0137 (8)−0.0026 (6)−0.0004 (6)−0.0006 (6)
N50.0232 (8)0.0181 (8)0.0108 (7)−0.0002 (7)−0.0002 (6)0.0029 (6)
C90.0143 (9)0.0185 (9)0.0185 (9)−0.0004 (7)−0.0013 (7)0.0023 (7)
C100.0319 (11)0.0227 (10)0.0126 (9)−0.0054 (9)0.0021 (8)−0.0028 (7)
C20.0142 (8)0.0177 (9)0.0119 (9)0.0005 (7)−0.0002 (7)−0.0022 (7)
C40.0127 (8)0.0177 (9)0.0187 (9)−0.0018 (7)−0.0018 (7)0.0013 (7)
C80.0301 (11)0.0202 (10)0.0222 (10)−0.0013 (9)−0.0004 (9)−0.0028 (8)
C10.0222 (9)0.0181 (9)0.0121 (8)0.0004 (8)0.0011 (7)−0.0018 (7)
C70.0396 (13)0.0161 (10)0.0325 (12)−0.0029 (9)−0.0025 (10)0.0010 (9)
C60.0338 (12)0.0214 (10)0.0253 (11)−0.0045 (9)−0.0019 (9)0.0084 (9)
C50.0210 (10)0.0228 (10)0.0184 (10)−0.0022 (8)−0.0020 (8)0.0040 (8)
Zn1—N4i1.9920 (15)C9—C81.391 (3)
Zn1—N12.0445 (15)C9—C41.404 (3)
Zn1—N32.0461 (15)C10—H10A0.9600
Zn1—Cl12.2022 (5)C10—H10B0.9600
N4—N51.344 (2)C10—H10C0.9600
N4—C11.356 (2)C2—C11.376 (3)
N4—Zn1ii1.9920 (15)C4—C51.400 (3)
N1—C31.339 (2)C8—C71.383 (3)
N1—C41.389 (2)C8—H80.9300
N3—N51.318 (2)C1—H10.9300
N3—C21.360 (2)C7—C61.403 (3)
C3—N21.351 (2)C7—H70.9300
C3—C21.448 (2)C6—C51.380 (3)
N2—C91.390 (2)C6—H60.9300
N2—C101.461 (2)C5—H50.9300
N4i—Zn1—N1109.83 (6)N2—C10—H10B109.5
N4i—Zn1—N3110.90 (6)H10A—C10—H10B109.5
N1—Zn1—N381.20 (6)N2—C10—H10C109.5
N4i—Zn1—Cl1110.69 (5)H10A—C10—H10C109.5
N1—Zn1—Cl1121.17 (4)H10B—C10—H10C109.5
N3—Zn1—Cl1119.94 (5)N3—C2—C1106.92 (16)
N5—N4—C1109.51 (15)N3—C2—C3114.77 (16)
N5—N4—Zn1ii117.63 (12)C1—C2—C3138.31 (17)
C1—N4—Zn1ii132.73 (12)N1—C4—C5130.65 (18)
C3—N1—C4105.82 (15)N1—C4—C9108.71 (16)
C3—N1—Zn1111.95 (12)C5—C4—C9120.64 (17)
C4—N1—Zn1141.79 (12)C7—C8—C9116.31 (18)
N5—N3—C2109.65 (14)C7—C8—H8121.8
N5—N3—Zn1137.05 (12)C9—C8—H8121.8
C2—N3—Zn1113.26 (12)N4—C1—C2106.21 (16)
N1—C3—N2112.29 (16)N4—C1—H1126.9
N1—C3—C2118.70 (16)C2—C1—H1126.9
N2—C3—C2128.99 (16)C8—C7—C6122.04 (19)
C3—N2—C9107.11 (15)C8—C7—H7119.0
C3—N2—C10126.80 (16)C6—C7—H7119.0
C9—N2—C10125.97 (16)C5—C6—C7121.60 (19)
N3—N5—N4107.71 (14)C5—C6—H6119.2
N2—C9—C8131.72 (17)C7—C6—H6119.2
N2—C9—C4106.03 (16)C6—C5—C4117.12 (18)
C8—C9—C4122.24 (17)C6—C5—H5121.4
N2—C10—H10A109.5C4—C5—H5121.4
D—H···AD—HH···AD···AD—H···A
C1—H1···N5iii0.932.493.274 (2)142
C10—H10B···Cl1iv0.962.813.744 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯N5i0.932.493.274 (2)142
C10—H10B⋯Cl1ii0.962.813.744 (2)165

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Solvothermal in situ metal/ligand reactions: a new bridge between coordination chemistry and organic synthetic chemistry.

Authors:  Xiao-Ming Chen; Ming-Liang Tong
Journal:  Acc Chem Res       Date:  2007-02       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Syntheses, structures and magnetic properties of a family of metal carboxylate polymers via in situ metal-ligand reactions of benzene-1,2,3-tricarboxylic acid.

Authors:  Yan-Zhen Zheng; Yue-Biao Zhang; Ming-Liang Tong; Wei Xue; Xiao-Ming Chen
Journal:  Dalton Trans       Date:  2009-02-28       Impact factor: 4.390

  3 in total

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