Literature DB >> 22589865

{5,5'-Dimeth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methanylyl-idene)]diphenolato}palladium(II).

Siti Kamilah Che Soh, Mustaffa Shamsuddin, Mohd Mustaqim Rosli, Hoong-Kun Fun.   

Abstract

In the title compound, [Pd(C(21)H(24)N(2)O(4))], the complete mol-ecule is generated by crystallographic mirror symmetry with the Pd and three C atoms lying on the mirror plane. The Pd-O and Pd-N distances are 1.9932 (6) and 2.0029 (7) Å, respectively. The dihedral angle between two benzene rings of the ligand is 79.21 (4)°. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into layers parallel to the ab plane. These planes are further connected by C-H⋯O inter-actions, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22589865      PMCID: PMC3343897          DOI: 10.1107/S1600536812013128

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Wan Nazihah Wan Ibrahim et al. (2008 ▶); Montazerozohori et al. (2009 ▶). For background to applications of palladium(II) complexes, see: Gupta et al. (2009 ▶); Lu et al. (2010 ▶); He & Cai (2011 ▶); Garoufis et al. (2008 ▶); Kumar et al. (2009 ▶); Islam et al. (2011 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

[Pd(C21H24N2O4)] M = 474.82 Orthorhombic, a = 11.5470 (4) Å b = 20.9656 (7) Å c = 7.8730 (3) Å V = 1905.97 (12) Å3 Z = 4 Mo Kα radiation μ = 1.00 mm−1 T = 100 K 0.27 × 0.24 × 0.18 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.773, T max = 0.839 30756 measured reflections 4296 independent reflections 4134 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.016 wR(F 2) = 0.043 S = 1.13 4296 reflections 134 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.62 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013128/kj2196sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013128/kj2196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd(C21H24N2O4)]F(000) = 968
Mr = 474.82Dx = 1.655 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 9824 reflections
a = 11.5470 (4) Åθ = 3.3–35.1°
b = 20.9656 (7) ŵ = 1.00 mm1
c = 7.8730 (3) ÅT = 100 K
V = 1905.97 (12) Å3Block, yellow
Z = 40.27 × 0.24 × 0.18 mm
Bruker APEX DUO CCD area-detector diffractometer4296 independent reflections
Radiation source: fine-focus sealed tube4134 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
φ and ω scansθmax = 35.1°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.773, Tmax = 0.839k = −33→33
30756 measured reflectionsl = −8→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.016Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.043H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0183P)2 + 0.777P] where P = (Fo2 + 2Fc2)/3
4296 reflections(Δ/σ)max = 0.003
134 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.62 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.535617 (6)0.25000.088830 (10)0.00982 (2)
O10.42276 (5)0.31425 (3)0.17501 (8)0.01411 (10)
O20.12833 (5)0.45403 (3)−0.02329 (9)0.01723 (11)
N10.63494 (6)0.31998 (3)−0.00483 (9)0.01240 (11)
C10.39331 (7)0.36205 (4)0.07712 (9)0.01203 (11)
C20.27757 (7)0.38427 (4)0.08646 (10)0.01310 (12)
H2A0.22510.36510.16420.016*
C30.24037 (7)0.43360 (4)−0.01673 (10)0.01370 (12)
C40.31792 (7)0.46562 (4)−0.12613 (11)0.01645 (13)
H4A0.29240.5004−0.19390.020*
C50.43136 (7)0.44543 (4)−0.13264 (11)0.01566 (13)
H5A0.48440.4675−0.20380.019*
C60.47127 (6)0.39285 (4)−0.03651 (10)0.01282 (12)
C70.59049 (7)0.37365 (4)−0.05364 (10)0.01349 (12)
H7A0.64150.4033−0.10590.016*
C80.76027 (6)0.31049 (4)−0.02515 (11)0.01447 (13)
H8A0.79640.30830.08870.017*
H8B0.79320.3479−0.08470.017*
C90.79183 (9)0.2500−0.12444 (14)0.01195 (16)
C100.73574 (10)0.2500−0.29972 (15)0.01630 (19)
H10A0.75940.2874−0.36090.024*
H10B0.65300.2500−0.28760.024*
C110.92430 (10)0.2500−0.14109 (16)0.01623 (19)
H11A0.94870.2874−0.20170.024*
H11B0.95840.2500−0.02990.024*
C120.04407 (7)0.41728 (5)0.06862 (13)0.01862 (15)
H12A−0.03320.43530.04960.028*
H12B0.06220.41850.19020.028*
H12C0.04570.37300.02880.028*
U11U22U33U12U13U23
Pd10.00822 (4)0.01192 (4)0.00933 (4)0.0000.00093 (2)0.000
O10.0140 (2)0.0151 (2)0.0133 (2)0.00348 (18)0.00348 (19)0.00199 (19)
O20.0125 (2)0.0189 (3)0.0203 (3)0.0032 (2)0.0008 (2)0.0040 (2)
N10.0097 (2)0.0144 (3)0.0131 (3)−0.0006 (2)0.0015 (2)−0.0015 (2)
C10.0122 (3)0.0127 (3)0.0112 (3)0.0005 (2)0.0008 (2)−0.0011 (2)
C20.0122 (3)0.0141 (3)0.0130 (3)0.0013 (2)0.0015 (2)0.0002 (2)
C30.0129 (3)0.0144 (3)0.0137 (3)0.0016 (2)−0.0001 (2)−0.0007 (2)
C40.0165 (3)0.0157 (3)0.0172 (3)0.0016 (2)0.0013 (3)0.0036 (3)
C50.0163 (3)0.0145 (3)0.0162 (3)0.0001 (2)0.0027 (3)0.0021 (2)
C60.0121 (3)0.0128 (3)0.0135 (3)0.0000 (2)0.0017 (2)0.0001 (2)
C70.0126 (3)0.0138 (3)0.0140 (3)−0.0013 (2)0.0020 (2)−0.0007 (2)
C80.0089 (3)0.0173 (3)0.0171 (3)−0.0012 (2)0.0013 (2)−0.0035 (3)
C90.0088 (4)0.0152 (4)0.0119 (4)0.0000.0012 (3)0.000
C100.0142 (4)0.0232 (5)0.0115 (4)0.0000.0000 (3)0.000
C110.0097 (4)0.0200 (5)0.0189 (5)0.0000.0025 (4)0.000
C120.0132 (3)0.0195 (4)0.0232 (4)0.0009 (3)0.0012 (3)0.0018 (3)
Pd1—O1i1.9932 (6)C5—H5A0.9500
Pd1—O11.9932 (6)C6—C71.4406 (11)
Pd1—N1i2.0029 (7)C7—H7A0.9500
Pd1—N12.0029 (7)C8—C91.5337 (10)
O1—C11.3092 (9)C8—H8A0.9900
O2—C31.3637 (10)C8—H8B0.9900
O2—C121.4366 (11)C9—C101.5244 (16)
N1—C71.2951 (10)C9—C8i1.5336 (10)
N1—C81.4695 (10)C9—C111.5353 (15)
C1—C21.4172 (11)C10—H10A0.9600
C1—C61.4239 (11)C10—H10B0.9600
C2—C31.3835 (11)C11—H11A0.9599
C2—H2A0.9500C11—H11B0.9600
C3—C41.4122 (12)C12—H12A0.9800
C4—C51.3776 (12)C12—H12B0.9800
C4—H4A0.9500C12—H12C0.9800
C5—C61.4144 (11)
O1i—Pd1—O185.03 (3)C1—C6—C7122.43 (7)
O1i—Pd1—N1i90.27 (3)N1—C7—C6126.41 (7)
O1—Pd1—N1i174.10 (3)N1—C7—H7A116.8
O1i—Pd1—N1174.10 (3)C6—C7—H7A116.8
O1—Pd1—N190.27 (3)N1—C8—C9113.67 (7)
N1i—Pd1—N194.20 (4)N1—C8—H8A108.8
C1—O1—Pd1119.13 (5)C9—C8—H8A108.8
C3—O2—C12117.06 (7)N1—C8—H8B108.8
C7—N1—C8118.40 (7)C9—C8—H8B108.8
C7—N1—Pd1121.25 (5)H8A—C8—H8B107.7
C8—N1—Pd1120.32 (5)C10—C9—C8i111.13 (6)
O1—C1—C2117.78 (7)C10—C9—C8111.13 (6)
O1—C1—C6123.55 (7)C8i—C9—C8111.56 (9)
C2—C1—C6118.67 (7)C10—C9—C11110.24 (9)
C3—C2—C1120.53 (7)C8i—C9—C11106.28 (6)
C3—C2—H2A119.7C8—C9—C11106.28 (6)
C1—C2—H2A119.7C9—C10—H10A109.5
O2—C3—C2123.47 (7)C9—C10—H10B109.5
O2—C3—C4115.41 (7)H10A—C10—H10B109.5
C2—C3—C4121.11 (7)C9—C11—H11A109.6
C5—C4—C3118.66 (7)C9—C11—H11B109.3
C5—C4—H4A120.7H11A—C11—H11B109.5
C3—C4—H4A120.7O2—C12—H12A109.5
C4—C5—C6121.96 (7)O2—C12—H12B109.5
C4—C5—H5A119.0H12A—C12—H12B109.5
C6—C5—H5A119.0O2—C12—H12C109.5
C5—C6—C1118.93 (7)H12A—C12—H12C109.5
C5—C6—C7118.62 (7)H12B—C12—H12C109.5
O1i—Pd1—O1—C1−132.69 (5)C3—C4—C5—C61.59 (13)
N1—Pd1—O1—C143.75 (6)C4—C5—C6—C1−3.42 (13)
O1—Pd1—N1—C7−29.00 (6)C4—C5—C6—C7178.41 (8)
N1i—Pd1—N1—C7147.14 (5)O1—C1—C6—C5−177.99 (7)
O1—Pd1—N1—C8153.13 (6)C2—C1—C6—C51.59 (11)
N1i—Pd1—N1—C8−30.72 (7)O1—C1—C6—C70.11 (12)
Pd1—O1—C1—C2144.53 (6)C2—C1—C6—C7179.69 (7)
Pd1—O1—C1—C6−35.88 (10)C8—N1—C7—C6−176.76 (8)
O1—C1—C2—C3−178.41 (7)Pd1—N1—C7—C65.33 (11)
C6—C1—C2—C31.98 (11)C5—C6—C7—N1−164.51 (8)
C12—O2—C3—C2−6.96 (12)C1—C6—C7—N117.38 (13)
C12—O2—C3—C4171.91 (8)C7—N1—C8—C9−125.73 (8)
C1—C2—C3—O2174.91 (7)Pd1—N1—C8—C952.19 (9)
C1—C2—C3—C4−3.90 (12)N1—C8—C9—C1057.06 (10)
O2—C3—C4—C5−176.79 (8)N1—C8—C9—C8i−67.56 (11)
C2—C3—C4—C52.11 (13)N1—C8—C9—C11177.01 (7)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O1ii0.992.373.3355 (10)166
C12—H12A···O2iii0.982.583.3719 (12)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O1i0.992.373.3355 (10)166
C12—H12A⋯O2ii0.982.583.3719 (12)138

Symmetry codes: (i) ; (ii) .

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