Literature DB >> 22589860

Dichlorido(ethanol-κO)[2-(1,3-thia-zol-4-yl-κN)-1H-benzimidazole-κN(3)]copper(II).

Long Li, Kai-Sheng Diao, Yu-Qiu Ding, Jin-Niu Tang, Dai-Yin Wang.   

Abstract

In the title complex, [CuCl(2)(C(10)n class="Species">H(7)N(3)S)(C(2)H(5)OH)], the Cu(II) ion is five-coordinated in a distorted square-pyramidal geometry by two N atoms from a 2-(1,3-thia-zol-4-yl)-1H-benzimidazole ligand, one O atom from an ethanol mol-ecule and two Cl atoms. In the crystal, O-H⋯Cl and N-H⋯Cl hydrogen bonds link the complex mol-ecules into a layer parallel to (100). π-π inter-actions between the thia-zole rings are observed [centroid-centroid distance = 3.749 (3) Å].

Entities:  

Year:  2012        PMID: 22589860      PMCID: PMC3343892          DOI: 10.1107/S1600536812013037

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related thia­bendazole complexes, see: Devereux et al. (2007 ▶); Umadevi et al. (1995 ▶).

Experimental

Crystal data

[CuCl2(C10n class="Species">H7N3S)(C2H6O)] M = 381.75 Monoclinic, a = 13.928 (5) Å b = 7.473 (3) Å c = 16.653 (4) Å β = 122.43 (2)° V = 1463.0 (9) Å3 Z = 4 Mo Kα radiation μ = 2.00 mm−1 T = 296 K 0.35 × 0.33 × 0.32 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.542, T max = 0.567 7540 measured reflections 2563 independent reflections 2139 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.109 S = 1.12 2563 reflections 182 parameters 1 restraint H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013037/hy2524sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013037/hy2524Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl2(C10H7N3S)(C2H6O)]F(000) = 772
Mr = 381.75Dx = 1.733 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2962 reflections
a = 13.928 (5) Åθ = 2.5–28.0°
b = 7.473 (3) ŵ = 2.00 mm1
c = 16.653 (4) ÅT = 296 K
β = 122.43 (2)°Block, blue
V = 1463.0 (9) Å30.35 × 0.33 × 0.32 mm
Z = 4
Bruker APEX CCD diffractometer2563 independent reflections
Radiation source: fine-focus sealed tube2139 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→16
Tmin = 0.542, Tmax = 0.567k = −8→8
7540 measured reflectionsl = −19→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0577P)2 + 0.818P] where P = (Fo2 + 2Fc2)/3
2563 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.58 e Å3
1 restraintΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.63072 (4)0.19084 (6)−0.14281 (3)0.03262 (17)
Cl10.51582 (8)0.09392 (13)−0.29888 (6)0.0417 (3)
Cl20.76893 (8)0.27324 (14)−0.16501 (7)0.0424 (3)
S10.31736 (8)0.12748 (15)−0.12506 (7)0.0451 (3)
O10.6837 (2)−0.1091 (4)−0.0919 (2)0.0475 (7)
H140.6287−0.1424−0.14280.071*
N10.4997 (2)0.1642 (4)−0.1231 (2)0.0323 (7)
N20.7045 (2)0.2934 (4)−0.0093 (2)0.0305 (6)
N30.6867 (2)0.3619 (4)0.1119 (2)0.0347 (7)
H130.65610.37390.14480.042*
C10.8865 (3)0.4787 (5)0.2244 (3)0.0438 (9)
H10.87860.50810.27490.053*
C20.9871 (3)0.5050 (5)0.2291 (3)0.0467 (10)
H21.04880.55280.28440.056*
C30.9993 (3)0.4623 (6)0.1540 (3)0.0475 (10)
H31.06860.48370.16000.057*
C40.9115 (3)0.3892 (6)0.0708 (3)0.0418 (9)
H40.92060.36010.02110.050*
C50.8079 (3)0.3602 (5)0.0638 (2)0.0333 (8)
C60.7975 (3)0.4063 (5)0.1408 (2)0.0342 (8)
C70.6359 (3)0.2965 (4)0.0229 (2)0.0296 (7)
C80.5201 (3)0.2321 (4)−0.0382 (2)0.0302 (7)
C90.3960 (3)0.1024 (5)−0.1753 (3)0.0397 (9)
H90.36750.0496−0.23440.048*
C100.8827 (4)−0.1291 (9)0.0142 (4)0.0862 (18)
H10A0.8844−0.00060.01460.129*
H10B0.9524−0.17450.02350.129*
H10C0.8741−0.17090.06450.129*
C110.7867 (4)−0.1919 (7)−0.0774 (4)0.0655 (13)
H11A0.7975−0.1583−0.12830.079*
H11B0.7809−0.3212−0.07700.079*
C120.4314 (3)0.2252 (5)−0.0274 (3)0.0384 (9)
H120.43170.26730.02530.046*
U11U22U33U12U13U23
Cu10.0366 (3)0.0378 (3)0.0267 (3)−0.00281 (18)0.0191 (2)−0.00050 (18)
Cl10.0483 (6)0.0476 (6)0.0280 (5)−0.0005 (4)0.0197 (4)−0.0028 (4)
Cl20.0430 (5)0.0529 (6)0.0393 (5)−0.0029 (4)0.0274 (5)0.0034 (4)
S10.0340 (5)0.0540 (6)0.0464 (6)−0.0062 (4)0.0211 (5)−0.0006 (5)
O10.0417 (15)0.0473 (17)0.0467 (17)0.0008 (12)0.0193 (14)0.0040 (13)
N10.0334 (16)0.0382 (17)0.0231 (15)−0.0026 (13)0.0137 (13)0.0001 (12)
N20.0326 (15)0.0330 (16)0.0249 (15)−0.0019 (12)0.0148 (13)0.0014 (12)
N30.0389 (17)0.0408 (17)0.0282 (16)−0.0026 (13)0.0205 (14)−0.0046 (13)
C10.054 (2)0.036 (2)0.036 (2)−0.0076 (18)0.0208 (19)−0.0076 (17)
C20.045 (2)0.037 (2)0.039 (2)−0.0134 (17)0.0101 (19)−0.0046 (17)
C30.036 (2)0.048 (2)0.049 (2)−0.0072 (18)0.0173 (19)0.005 (2)
C40.036 (2)0.053 (2)0.038 (2)−0.0038 (17)0.0209 (18)0.0017 (18)
C50.0335 (19)0.0355 (19)0.027 (2)−0.0027 (15)0.0140 (16)0.0004 (15)
C60.0348 (19)0.0333 (19)0.031 (2)−0.0009 (15)0.0156 (16)−0.0006 (15)
C70.0353 (19)0.0267 (18)0.0276 (19)0.0005 (14)0.0173 (16)0.0008 (14)
C80.0369 (19)0.0245 (17)0.0303 (19)0.0007 (14)0.0188 (16)0.0046 (14)
C90.042 (2)0.044 (2)0.032 (2)−0.0075 (17)0.0193 (18)−0.0026 (17)
C100.056 (3)0.086 (4)0.088 (4)0.008 (3)0.019 (3)0.006 (3)
C110.070 (3)0.054 (3)0.072 (4)0.009 (2)0.038 (3)0.008 (2)
C120.042 (2)0.040 (2)0.038 (2)−0.0013 (16)0.0257 (19)−0.0007 (17)
Cu1—N12.030 (3)C1—H10.9300
Cu1—N22.033 (3)C2—C31.387 (6)
Cu1—Cl12.3194 (12)C2—H20.9300
Cu1—Cl22.2328 (12)C3—C41.377 (5)
Cu1—O12.370 (3)C3—H30.9300
S1—C91.707 (4)C4—C51.400 (5)
S1—C121.712 (4)C4—H40.9300
O1—C111.459 (5)C5—C61.408 (5)
O1—H140.8200C7—C81.451 (5)
N1—C91.308 (5)C8—C121.343 (5)
N1—C81.379 (5)C9—H90.9300
N2—C71.324 (4)C10—C111.466 (7)
N2—C51.388 (4)C10—H10A0.9600
N3—C71.346 (5)C10—H10B0.9600
N3—C61.389 (4)C10—H10C0.9600
N3—H130.8600C11—H11A0.9700
C1—C21.375 (6)C11—H11B0.9700
C1—C61.385 (5)C12—H120.9300
N1—Cu1—N280.28 (12)C3—C4—H4121.1
N1—Cu1—Cl2169.60 (9)C5—C4—H4121.1
N2—Cu1—Cl295.86 (9)N2—C5—C4131.8 (3)
N1—Cu1—Cl190.62 (9)N2—C5—C6108.8 (3)
N2—Cu1—Cl1169.49 (9)C4—C5—C6119.4 (3)
Cl2—Cu1—Cl192.21 (4)C1—C6—N3132.1 (3)
N1—Cu1—O189.08 (10)C1—C6—C5122.5 (3)
N2—Cu1—O195.01 (11)N3—C6—C5105.4 (3)
Cl2—Cu1—O1100.92 (7)N2—C7—N3112.7 (3)
Cl1—Cu1—O190.06 (8)N2—C7—C8118.8 (3)
C9—S1—C1290.03 (18)N3—C7—C8128.5 (3)
C11—O1—Cu1123.4 (3)C12—C8—N1115.1 (3)
C11—O1—H14109.5C12—C8—C7132.4 (3)
Cu1—O1—H1488.7N1—C8—C7112.5 (3)
C9—N1—C8111.0 (3)N1—C9—S1114.0 (3)
C9—N1—Cu1134.1 (3)N1—C9—H9123.0
C8—N1—Cu1114.8 (2)S1—C9—H9123.0
C7—N2—C5105.8 (3)C11—C10—H10A109.5
C7—N2—Cu1113.5 (2)C11—C10—H10B109.5
C5—N2—Cu1140.6 (2)H10A—C10—H10B109.5
C7—N3—C6107.3 (3)C11—C10—H10C109.5
C7—N3—H13126.3H10A—C10—H10C109.5
C6—N3—H13126.4H10B—C10—H10C109.5
C2—C1—C6116.6 (4)O1—C11—C10107.6 (4)
C2—C1—H1121.7O1—C11—H11A110.2
C6—C1—H1121.7C10—C11—H11A110.2
C1—C2—C3122.0 (4)O1—C11—H11B110.2
C1—C2—H2119.0C10—C11—H11B110.2
C3—C2—H2119.0H11A—C11—H11B108.5
C4—C3—C2121.7 (4)C8—C12—S1109.9 (3)
C4—C3—H3119.1C8—C12—H12125.1
C2—C3—H3119.1S1—C12—H12125.1
C3—C4—C5117.7 (4)
N1—Cu1—O1—C11−174.0 (3)C2—C1—C6—N3179.7 (4)
N2—Cu1—O1—C11−93.8 (3)C2—C1—C6—C50.3 (6)
Cl2—Cu1—O1—C113.1 (3)C7—N3—C6—C1179.7 (4)
Cl1—Cu1—O1—C1195.4 (3)C7—N3—C6—C5−0.8 (4)
N2—Cu1—N1—C9179.9 (4)N2—C5—C6—C1−179.3 (3)
Cl2—Cu1—N1—C9111.0 (5)C4—C5—C6—C1−0.5 (6)
Cl1—Cu1—N1—C95.2 (3)N2—C5—C6—N31.1 (4)
O1—Cu1—N1—C9−84.9 (4)C4—C5—C6—N3180.0 (3)
N2—Cu1—N1—C83.3 (2)C5—N2—C7—N30.4 (4)
Cl2—Cu1—N1—C8−65.6 (6)Cu1—N2—C7—N3178.9 (2)
Cl1—Cu1—N1—C8−171.4 (2)C5—N2—C7—C8−179.4 (3)
O1—Cu1—N1—C898.5 (2)Cu1—N2—C7—C8−0.9 (4)
N1—Cu1—N2—C7−1.2 (2)C6—N3—C7—N20.3 (4)
Cl2—Cu1—N2—C7169.0 (2)C6—N3—C7—C8−179.9 (3)
Cl1—Cu1—N2—C729.1 (6)C9—N1—C8—C12−1.4 (4)
O1—Cu1—N2—C7−89.4 (2)Cu1—N1—C8—C12175.9 (2)
N1—Cu1—N2—C5176.5 (4)C9—N1—C8—C7178.1 (3)
Cl2—Cu1—N2—C5−13.2 (4)Cu1—N1—C8—C7−4.5 (4)
Cl1—Cu1—N2—C5−153.1 (4)N2—C7—C8—C12−177.0 (4)
O1—Cu1—N2—C588.3 (4)N3—C7—C8—C123.2 (6)
C6—C1—C2—C30.3 (6)N2—C7—C8—N13.7 (4)
C1—C2—C3—C4−0.8 (7)N3—C7—C8—N1−176.2 (3)
C2—C3—C4—C50.6 (6)C8—N1—C9—S11.2 (4)
C7—N2—C5—C4−179.6 (4)Cu1—N1—C9—S1−175.49 (19)
Cu1—N2—C5—C42.5 (7)C12—S1—C9—N1−0.6 (3)
C7—N2—C5—C6−0.9 (4)Cu1—O1—C11—C1078.2 (5)
Cu1—N2—C5—C6−178.8 (3)N1—C8—C12—S11.0 (4)
C3—C4—C5—N2178.6 (4)C7—C8—C12—S1−178.4 (3)
C3—C4—C5—C60.0 (5)C9—S1—C12—C8−0.3 (3)
D—H···AD—HH···AD···AD—H···A
O1—H14···Cl1i0.822.603.246 (3)136
N3—H13···Cl1ii0.862.593.431 (4)165
Table 1

Selected bond lengths (Å)

Cu1—N12.030 (3)
Cu1—N22.033 (3)
Cu1—Cl12.3194 (12)
Cu1—Cl22.2328 (12)
Cu1—O12.370 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H14⋯Cl1i0.822.603.246 (3)136
N3—H13⋯Cl1ii0.862.593.431 (4)165

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Synthesis, X-ray crystal structures and biomimetic and anticancer activities of novel copper(II)benzoate complexes incorporating 2-(4'-thiazolyl)benzimidazole (thiabendazole), 2-(2-pyridyl)benzimidazole and 1,10-phenanthroline as chelating nitrogen donor ligands.

Authors:  Michael Devereux; Denis O Shea; Andrew Kellett; Malachy McCann; Maureen Walsh; Denise Egan; Carol Deegan; Kinga Kedziora; Georgina Rosair; Helge Müller-Bunz
Journal:  J Inorg Biochem       Date:  2007-02-14       Impact factor: 4.155

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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