Literature DB >> 22589805

catena-Poly[[[2-({6-[(pyrimidin-2-ylsulfanyl-κS)meth-yl]pyridin-2-yl-κN}methyl-sulfan-yl)pyrimidine]-copper(I)]-μ-thio-cyanato-κ(2)N:S].

Rong Peng, Seik Weng Ng.   

Abstract

The N-heterocyclic ligaical">nd iical">n the title compouical">nd, [n class="Chemical">Cu(NCS)(C(15)H(13)N(5)S(2))](n), coordinates to the Cu(I) atom through its pyridine N-donor site, and adjacent metal atoms are bridged by the thio-cyanate ion, forming a helical chain along the b axis. The geometry of the metal atom is tetra-hedral owing to a somewhat long intra-molecular Cu-S inter-action of 2.5621 (9) Å.

Entities:  

Year:  2012        PMID: 22589805      PMCID: PMC3343831          DOI: 10.1107/S160053681201063X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the N-heterocyle and its copper(I) adducts, see: Peng et al. (2006 ▶).

Experimental

Crystal data

[Cu(NCS)(C15H13N5S2)] M = 449.04 Monoclinic, a = 11.1706 (8) Å b = 8.6735 (6) Å c = 19.0956 (14) Å β = 100.978 (1)° V = 1816.3 (2) Å3 Z = 4 Mo Kα radiation μ = 1.56 mm−1 T = 293 K 0.16 × 0.11 × 0.06 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.703, T max = 1.000 10799 measured reflections 4077 independent reflections 3022 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.125 S = 1.04 4077 reflections 235 parameters H-atom parameters constrained Δρmax = 1.18 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201063X/zs2186sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201063X/zs2186Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NCS)(C15H13N5S2)]F(000) = 912
Mr = 449.04Dx = 1.642 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2743 reflections
a = 11.1706 (8) Åθ = 2.6–25.0°
b = 8.6735 (6) ŵ = 1.56 mm1
c = 19.0956 (14) ÅT = 293 K
β = 100.978 (1)°Prism, brown
V = 1816.3 (2) Å30.16 × 0.11 × 0.06 mm
Z = 4
Bruker SMART APEX CCD diffractometer4077 independent reflections
Radiation source: fine-focus sealed tube3022 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→14
Tmin = 0.703, Tmax = 1.000k = −11→4
10799 measured reflectionsl = −24→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0592P)2 + 0.7767P] where P = (Fo2 + 2Fc2)/3
4077 reflections(Δ/σ)max = 0.001
235 parametersΔρmax = 1.18 e Å3
0 restraintsΔρmin = −0.51 e Å3
xyzUiso*/Ueq
Cu10.40542 (4)0.22472 (5)0.23431 (3)0.06021 (17)
S10.39013 (7)0.38008 (9)0.11883 (4)0.0492 (2)
S20.51157 (8)0.14604 (12)0.39459 (5)0.0604 (2)
S30.05933 (8)0.47654 (10)0.29022 (5)0.0583 (2)
N10.4820 (3)0.2133 (3)0.02977 (15)0.0547 (7)
N20.6034 (2)0.4274 (3)0.07782 (14)0.0522 (6)
N30.5545 (2)0.3694 (3)0.26678 (12)0.0404 (5)
N40.6536 (3)0.3205 (4)0.49195 (15)0.0615 (8)
N50.4632 (3)0.2354 (4)0.51544 (18)0.0740 (9)
N60.2579 (3)0.3150 (3)0.25756 (16)0.0560 (7)
C10.5066 (3)0.3375 (4)0.07088 (15)0.0425 (6)
C20.5642 (3)0.1795 (4)−0.00998 (18)0.0573 (8)
H20.55050.0949−0.04040.069*
C30.6680 (3)0.2642 (4)−0.00794 (18)0.0565 (9)
H30.72480.2391−0.03600.068*
C40.6842 (3)0.3875 (4)0.03729 (18)0.0578 (9)
H40.75440.44650.04010.069*
C50.4517 (3)0.5411 (4)0.17298 (17)0.0508 (7)
H5A0.47920.61730.14240.061*
H5B0.38650.58750.19280.061*
C60.5557 (3)0.5052 (3)0.23334 (15)0.0428 (7)
C70.6469 (3)0.6129 (4)0.25452 (18)0.0542 (8)
H70.64540.70660.23070.065*
C80.7392 (3)0.5806 (5)0.31075 (19)0.0611 (9)
H80.80150.65130.32540.073*
C90.7378 (3)0.4420 (4)0.34490 (18)0.0549 (8)
H90.79930.41790.38340.066*
C100.6455 (3)0.3388 (4)0.32216 (16)0.0463 (7)
C110.6440 (3)0.1836 (4)0.35597 (19)0.0582 (8)
H11A0.71630.17360.39300.070*
H11B0.64870.10550.32020.070*
C120.5486 (3)0.2465 (4)0.47565 (18)0.0514 (8)
C130.6736 (4)0.3913 (5)0.5549 (2)0.0738 (11)
H130.74610.44540.56860.089*
C140.5936 (4)0.3884 (6)0.5997 (2)0.0797 (12)
H140.60950.43880.64350.096*
C150.4898 (4)0.3090 (7)0.5780 (2)0.0903 (15)
H150.43340.30510.60800.108*
C160.1773 (3)0.3838 (3)0.26969 (16)0.0443 (7)
U11U22U33U12U13U23
Cu10.0529 (3)0.0354 (2)0.0982 (4)0.00026 (17)0.0294 (2)−0.0022 (2)
S10.0522 (4)0.0427 (4)0.0549 (4)0.0001 (3)0.0157 (3)0.0011 (3)
S20.0644 (5)0.0590 (6)0.0588 (5)−0.0066 (4)0.0142 (4)0.0121 (4)
S30.0532 (5)0.0343 (4)0.0968 (7)0.0037 (3)0.0376 (4)0.0064 (4)
N10.0595 (17)0.0439 (16)0.0633 (16)−0.0106 (13)0.0185 (13)−0.0113 (13)
N20.0567 (16)0.0472 (16)0.0533 (15)−0.0099 (13)0.0123 (12)−0.0070 (12)
N30.0459 (13)0.0321 (13)0.0478 (13)0.0040 (10)0.0206 (11)0.0004 (10)
N40.0522 (17)0.075 (2)0.0563 (17)−0.0033 (15)0.0080 (13)0.0150 (15)
N50.0558 (18)0.095 (3)0.076 (2)−0.0009 (17)0.0254 (15)0.0030 (19)
N60.0511 (15)0.0437 (15)0.0782 (18)0.0038 (13)0.0252 (14)0.0003 (14)
C10.0507 (16)0.0363 (15)0.0401 (14)0.0009 (13)0.0080 (12)0.0061 (12)
C20.066 (2)0.0468 (18)0.0612 (19)−0.0061 (16)0.0175 (17)−0.0147 (16)
C30.057 (2)0.058 (2)0.0585 (19)0.0017 (16)0.0199 (16)−0.0053 (16)
C40.0519 (18)0.061 (2)0.063 (2)−0.0144 (16)0.0168 (16)−0.0090 (17)
C50.066 (2)0.0342 (16)0.0550 (17)0.0072 (15)0.0190 (15)0.0018 (14)
C60.0543 (16)0.0332 (15)0.0477 (15)0.0029 (13)0.0268 (13)−0.0035 (12)
C70.068 (2)0.0411 (17)0.0615 (19)−0.0099 (16)0.0331 (17)−0.0036 (15)
C80.059 (2)0.063 (2)0.067 (2)−0.0173 (18)0.0274 (18)−0.0150 (18)
C90.0469 (17)0.065 (2)0.0551 (18)0.0031 (16)0.0159 (14)−0.0075 (17)
C100.0495 (17)0.0447 (17)0.0506 (17)0.0086 (14)0.0244 (14)0.0015 (14)
C110.063 (2)0.057 (2)0.0587 (19)0.0121 (17)0.0203 (16)0.0087 (17)
C120.0459 (17)0.0512 (19)0.0583 (18)0.0115 (14)0.0133 (14)0.0189 (15)
C130.075 (3)0.076 (3)0.064 (2)−0.008 (2)−0.001 (2)0.010 (2)
C140.091 (3)0.081 (3)0.067 (2)0.017 (3)0.014 (2)−0.004 (2)
C150.078 (3)0.128 (4)0.076 (3)0.016 (3)0.040 (2)−0.006 (3)
C160.0457 (16)0.0334 (15)0.0566 (17)−0.0040 (13)0.0166 (13)0.0032 (13)
Cu1—N61.951 (3)C2—H20.9300
Cu1—N32.083 (2)C3—C41.364 (5)
Cu1—S3i2.2536 (9)C3—H30.9300
Cu1—S12.5621 (9)C4—H40.9300
S1—C11.767 (3)C5—C61.505 (4)
S1—C51.794 (3)C5—H5A0.9700
S2—C121.756 (4)C5—H5B0.9700
S2—C111.804 (3)C6—C71.385 (4)
S3—C161.653 (3)C7—C81.369 (5)
S3—Cu1ii2.2536 (9)C7—H70.9300
N1—C11.331 (4)C8—C91.369 (5)
N1—C21.331 (4)C8—H80.9300
N2—C11.319 (4)C9—C101.372 (5)
N2—C41.341 (4)C9—H90.9300
N3—C61.341 (4)C10—C111.494 (5)
N3—C101.346 (4)C11—H11A0.9700
N4—C121.322 (4)C11—H11B0.9700
N4—C131.329 (5)C13—C141.351 (6)
N5—C121.331 (4)C13—H130.9300
N5—C151.337 (6)C14—C151.344 (7)
N6—C161.140 (4)C14—H140.9300
C2—C31.367 (5)C15—H150.9300
N6—Cu1—N3110.66 (11)H5A—C5—H5B107.4
N6—Cu1—S3i128.26 (9)N3—C6—C7121.8 (3)
N3—Cu1—S3i118.42 (7)N3—C6—C5118.0 (3)
N6—Cu1—S193.67 (9)C7—C6—C5120.1 (3)
N3—Cu1—S181.83 (7)C8—C7—C6119.6 (3)
S3i—Cu1—S1108.00 (4)C8—C7—H7120.2
C1—S1—C5102.84 (15)C6—C7—H7120.2
C1—S1—Cu1113.65 (10)C7—C8—C9118.6 (3)
C5—S1—Cu187.58 (10)C7—C8—H8120.7
C12—S2—C11101.37 (17)C9—C8—H8120.7
C16—S3—Cu1ii103.70 (10)C8—C9—C10119.9 (3)
C1—N1—C2115.3 (3)C8—C9—H9120.1
C1—N2—C4114.7 (3)C10—C9—H9120.1
C6—N3—C10118.2 (3)N3—C10—C9122.0 (3)
C6—N3—Cu1117.9 (2)N3—C10—C11116.6 (3)
C10—N3—Cu1123.8 (2)C9—C10—C11121.4 (3)
C12—N4—C13115.2 (3)C10—C11—S2114.6 (2)
C12—N5—C15114.5 (3)C10—C11—H11A108.6
C16—N6—Cu1172.1 (3)S2—C11—H11A108.6
N2—C1—N1127.7 (3)C10—C11—H11B108.6
N2—C1—S1119.7 (2)S2—C11—H11B108.6
N1—C1—S1112.6 (2)H11A—C11—H11B107.6
N1—C2—C3122.7 (3)N4—C12—N5127.0 (3)
N1—C2—H2118.7N4—C12—S2119.9 (2)
C3—C2—H2118.7N5—C12—S2113.2 (3)
C4—C3—C2116.6 (3)N4—C13—C14123.2 (4)
C4—C3—H3121.7N4—C13—H13118.4
C2—C3—H3121.7C14—C13—H13118.4
N2—C4—C3123.0 (3)C15—C14—C13116.7 (4)
N2—C4—H4118.5C15—C14—H14121.7
C3—C4—H4118.5C13—C14—H14121.7
C6—C5—S1115.8 (2)N5—C15—C14123.5 (4)
C6—C5—H5A108.3N5—C15—H15118.2
S1—C5—H5A108.3C14—C15—H15118.2
C6—C5—H5B108.3N6—C16—S3177.0 (3)
S1—C5—H5B108.3
N6—Cu1—S1—C1−178.20 (14)C10—N3—C6—C5−178.1 (2)
N3—Cu1—S1—C171.44 (13)Cu1—N3—C6—C5−2.2 (3)
S3i—Cu1—S1—C1−45.88 (12)S1—C5—C6—N3−35.0 (3)
N6—Cu1—S1—C578.83 (14)S1—C5—C6—C7147.2 (2)
N3—Cu1—S1—C5−31.53 (12)N3—C6—C7—C80.5 (4)
S3i—Cu1—S1—C5−148.84 (11)C5—C6—C7—C8178.2 (3)
N6—Cu1—N3—C6−67.0 (2)C6—C7—C8—C9−0.5 (5)
S3i—Cu1—N3—C6129.96 (18)C7—C8—C9—C100.4 (5)
S1—Cu1—N3—C623.86 (18)C6—N3—C10—C90.2 (4)
N6—Cu1—N3—C10108.6 (2)Cu1—N3—C10—C9−175.4 (2)
S3i—Cu1—N3—C10−54.4 (2)C6—N3—C10—C11−177.3 (2)
S1—Cu1—N3—C10−160.5 (2)Cu1—N3—C10—C117.0 (3)
C4—N2—C1—N11.0 (5)C8—C9—C10—N3−0.3 (5)
C4—N2—C1—S1−177.9 (2)C8—C9—C10—C11177.2 (3)
C2—N1—C1—N2−1.8 (5)N3—C10—C11—S2−61.7 (3)
C2—N1—C1—S1177.2 (3)C9—C10—C11—S2120.8 (3)
C5—S1—C1—N2−4.7 (3)C12—S2—C11—C10−79.1 (3)
Cu1—S1—C1—N2−97.7 (2)C13—N4—C12—N5−0.5 (6)
C5—S1—C1—N1176.2 (2)C13—N4—C12—S2−179.2 (3)
Cu1—S1—C1—N183.2 (2)C15—N5—C12—N40.3 (6)
C1—N1—C2—C31.2 (5)C15—N5—C12—S2179.1 (3)
N1—C2—C3—C4−0.2 (6)C11—S2—C12—N4−0.6 (3)
C1—N2—C4—C30.3 (5)C11—S2—C12—N5−179.5 (3)
C2—C3—C4—N2−0.7 (5)C12—N4—C13—C140.3 (6)
C1—S1—C5—C6−71.3 (2)N4—C13—C14—C150.0 (7)
Cu1—S1—C5—C642.4 (2)C12—N5—C15—C140.1 (7)
C10—N3—C6—C7−0.3 (4)C13—C14—C15—N5−0.2 (8)
Cu1—N3—C6—C7175.6 (2)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Increasing structure dimensionality of copper(I) complexes by varying the flexible thioether ligand geometry and counteranions.

Authors:  Rong Peng; Dan Li; Tao Wu; Xiao-Ping Zhou; Seik Weng Ng
Journal:  Inorg Chem       Date:  2006-05-15       Impact factor: 5.165

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.