Literature DB >> 22589798

[2-(Dimethyl-amino)-ethanol-κ(2)N,O][2-(dimethyl-amino)-ethano-lato-κ(2)N,O]iodidocopper(II).

Elena A Buvaylo, Volodymyr N Kokozay, Olga Yu Vassilyeva, Brian W Skelton.   

Abstract

The title compound, [Cu(C(4)H(10)NO)I(C(4)H(11)NO)], was obtained unintentionally as the product of an attempted synthesis of a Cu/Zn mixed-metal complex using zerovalent copper, zinc(II) oxide and ammonium iodide in pure 2-(dimethyl-amino)-ethanol, in air. The mol-ecular complex has no crystallographically imposed symmetry. The coordination geometry around the metal atom is distorted square-pyramidal. The equatorial coordination around copper involves donor atoms of the bidentate chelating 2-(dimethyl-amino)-ethanol ligand and the 2-(dimethyl-amino)-ethano-late group, which are mutually trans to each other, with four approximately equal short Cu-O/N bond distances. The axial Cu-I bond is substanti-ally elongated. Inter-molecular hydrogen-bonding inter-actions involving the -OH group of the neutral 2-(dimethyl-amino)-ethanol ligand to the O atom of the monodeprotonated 2-(dimethyl-amino)-ethano-late group of the mol-ecule related by the n-glide plane, as indicated by the O⋯O distance of 2.482 (12) Å, form chains of mol-ecules propagating along [101].

Entities:  

Year:  2012        PMID: 22589798      PMCID: PMC3343824          DOI: 10.1107/S1600536812010215

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthesis, see: Vinogradova et al. (2002 ▶). Buvaylo et al. (2009 ▶, 2011 ▶). Elongation of the axial Cu—I bond is common in this kind of compound, see: Wells (1986 ▶).

Experimental

Crystal data

[Cu(C4H10NO)I(C4H11NO)] M = 367.71 Monoclinic, a = 8.690 (1) Å b = 15.241 (1) Å c = 11.116 (1) Å β = 106.847 (10)° V = 1409.1 (2) Å3 Z = 4 Mo Kα radiation μ = 3.72 mm−1 T = 296 K 0.32 × 0.3 × 0.2 mm

Data collection

Rigaku AFC-6S diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.333, T max = 0.47 2642 measured reflections 2471 independent reflections 1003 reflections with I > 2σ(I) R int = 0.089 3 standard reflections every 150 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.204 S = 1.00 2471 reflections 133 parameters H-atom parameters constrained Δρmax = 1.80 e Å−3 Δρmin = −0.83 e Å−3 Data collection: AFC6S Diffractometer Control Software (Molecular Structure Corporation, 1998) ▶; cell refinement: AFC6S Diffractometer Control Software; data reduction: TEXSAN (Molec­ular Structure Corporation & Rigaku, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Johnson (1976 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010215/ds2178sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010215/ds2178Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C4H10NO)I(C4H11NO)]F(000) = 724
Mr = 367.71Dx = 1.733 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71069 Å
Hall symbol: -p 2ynCell parameters from 6 reflections
a = 8.690 (1) Åθ = 10.9–11.9°
b = 15.241 (1) ŵ = 3.72 mm1
c = 11.116 (1) ÅT = 296 K
β = 106.847 (10)°Rod, blue-green
V = 1409.1 (2) Å30.32 × 0.3 × 0.2 mm
Z = 4
Rigaku AFC-6S diffractometer1003 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.089
Graphite monochromatorθmax = 25°, θmin = 2.3°
2θ–ω scansh = 0→10
Absorption correction: ψ scan (North et al., 1968)k = 0→18
Tmin = 0.333, Tmax = 0.47l = −13→12
2642 measured reflections3 standard reflections every 150 reflections
2471 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.204H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0962P)2] where P = (Fo2 + 2Fc2)/3
2471 reflections(Δ/σ)max = 0.013
133 parametersΔρmax = 1.80 e Å3
0 restraintsΔρmin = −0.83 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.64794 (15)0.39539 (8)0.25072 (11)0.0679 (5)
Cu10.4723 (2)0.26167 (12)0.34694 (15)0.0456 (6)
O10.5633 (10)0.2803 (6)0.5351 (8)0.044 (2)
O20.3381 (11)0.2106 (6)0.1834 (8)0.038 (2)
H2O0.24280.21470.14370.08 (6)*
N10.2813 (13)0.3302 (7)0.3748 (9)0.038 (3)
N20.6101 (12)0.1521 (7)0.3455 (9)0.033 (3)
C10.4697 (16)0.3364 (10)0.5848 (13)0.050 (4)
H1A0.53910.37550.64570.06*
H1B0.40740.30210.62760.06*
C20.3579 (18)0.3894 (9)0.4808 (13)0.048 (4)
H2A0.27610.41730.51130.057*
H2B0.41780.43490.4530.057*
C30.1879 (19)0.3814 (10)0.2666 (13)0.061 (5)
H3A0.09860.40860.28640.092*
H3B0.14880.34340.19540.092*
H3C0.25510.42590.2470.092*
C40.1717 (17)0.2652 (10)0.4069 (14)0.052 (4)
H4A0.08540.29550.4270.079*
H4B0.23040.23110.47810.079*
H4C0.12840.22710.33650.079*
C50.4044 (16)0.1367 (9)0.1424 (13)0.046 (4)
H5A0.38690.13980.05230.055*
H5B0.35280.08390.16070.055*
C60.5814 (15)0.1335 (9)0.2087 (11)0.038 (3)
H6A0.62340.07590.1980.045*
H6B0.6370.17660.17250.045*
C70.7829 (17)0.1630 (11)0.4054 (13)0.059 (5)
H7A0.80630.15340.49420.089*
H7B0.81440.22150.39050.089*
H7C0.84130.12140.37070.089*
C80.5534 (19)0.0790 (9)0.4089 (13)0.054 (4)
H8A0.59480.02460.38770.08*
H8B0.43810.07750.3820.08*
H8C0.59060.08760.49820.08*
U11U22U33U12U13U23
I10.0801 (9)0.0630 (7)0.0579 (7)−0.0279 (7)0.0159 (6)0.0090 (6)
Cu10.0337 (9)0.0659 (13)0.0304 (9)0.0154 (9)−0.0015 (7)−0.0125 (9)
O10.040 (5)0.057 (6)0.032 (5)0.016 (5)0.006 (4)−0.003 (5)
O20.030 (6)0.046 (6)0.034 (5)−0.003 (4)0.004 (4)−0.012 (5)
N10.042 (7)0.047 (7)0.021 (6)0.013 (5)0.005 (5)−0.001 (5)
N20.033 (6)0.045 (7)0.020 (5)−0.010 (5)0.005 (5)−0.001 (5)
C10.038 (9)0.063 (11)0.046 (9)0.004 (8)0.005 (7)−0.006 (8)
C20.050 (9)0.046 (9)0.045 (8)0.003 (8)0.010 (7)−0.015 (8)
C30.073 (12)0.062 (11)0.037 (8)0.027 (9)−0.001 (8)−0.001 (8)
C40.048 (9)0.070 (11)0.053 (9)−0.019 (8)0.035 (8)−0.008 (8)
C50.053 (9)0.048 (9)0.032 (8)0.011 (7)0.007 (7)0.005 (7)
C60.038 (8)0.045 (9)0.030 (7)0.011 (7)0.011 (6)0.014 (6)
C70.059 (10)0.071 (12)0.042 (9)0.033 (9)0.008 (8)−0.009 (9)
C80.081 (12)0.043 (9)0.034 (8)0.000 (8)0.013 (8)0.011 (7)
I1—Cu12.928 (2)C2—H2B0.97
Cu1—O12.030 (9)C3—H3A0.96
Cu1—N22.058 (11)C3—H3B0.96
Cu1—N12.059 (10)C3—H3C0.96
Cu1—O22.010 (8)C4—H4A0.96
O1—C11.399 (16)C4—H4B0.96
O2—C51.400 (16)C4—H4C0.96
O2—H2O0.82C5—C61.502 (17)
N1—C31.466 (15)C5—H5A0.97
N1—C21.481 (16)C5—H5B0.97
N1—C41.488 (16)C6—H6A0.97
N2—C71.465 (16)C6—H6B0.97
N2—C81.476 (17)C7—H7A0.96
N2—C61.495 (15)C7—H7B0.96
C1—C21.512 (19)C7—H7C0.96
C1—H1A0.97C8—H8A0.96
C1—H1B0.97C8—H8B0.96
C2—H2A0.97C8—H8C0.96
O1—Cu1—N293.9 (4)N1—C3—H3A109.5
O1—Cu1—N182.2 (4)N1—C3—H3B109.5
N2—Cu1—N1155.4 (4)H3A—C3—H3B109.5
O1—Cu1—I1101.0 (3)N1—C3—H3C109.5
N2—Cu1—I1101.3 (3)H3A—C3—H3C109.5
N1—Cu1—I1103.3 (3)H3B—C3—H3C109.5
I1—Cu1—O299.6 (3)N1—C4—H4A109.5
O1—Cu1—O2159.5 (4)N1—C4—H4B109.5
O2—Cu1—N192.9 (4)H4A—C4—H4B109.5
O2—Cu1—N282.3 (4)N1—C4—H4C109.5
C1—O1—Cu1113.3 (7)H4A—C4—H4C109.5
C5—O2—H2O109.5H4B—C4—H4C109.5
C3—N1—C2110.0 (11)O2—C5—C6109.0 (11)
C3—N1—C4108.1 (11)O2—C5—H5A109.9
C2—N1—C4112.7 (11)C6—C5—H5A109.9
C3—N1—Cu1115.2 (9)O2—C5—H5B109.9
C2—N1—Cu1103.5 (8)C6—C5—H5B109.9
C4—N1—Cu1107.4 (8)H5A—C5—H5B108.3
C7—N2—C8108.0 (11)N2—C6—C5109.7 (10)
C7—N2—C6109.3 (10)N2—C6—H6A109.7
C8—N2—C6111.3 (10)C5—C6—H6A109.7
C7—N2—Cu1115.2 (9)N2—C6—H6B109.7
C8—N2—Cu1109.4 (8)C5—C6—H6B109.7
C6—N2—Cu1103.6 (7)H6A—C6—H6B108.2
O1—C1—C2110.1 (11)N2—C7—H7A109.5
O1—C1—H1A109.6N2—C7—H7B109.5
C2—C1—H1A109.6H7A—C7—H7B109.5
O1—C1—H1B109.6N2—C7—H7C109.5
C2—C1—H1B109.6H7A—C7—H7C109.5
H1A—C1—H1B108.2H7B—C7—H7C109.5
N1—C2—C1108.9 (11)N2—C8—H8A109.5
N1—C2—H2A109.9N2—C8—H8B109.5
C1—C2—H2A109.9H8A—C8—H8B109.5
N1—C2—H2B109.9N2—C8—H8C109.5
C1—C2—H2B109.9H8A—C8—H8C109.5
H2A—C2—H2B108.3H8B—C8—H8C109.5
D—H···AD—HH···AD···AD—H···A
O2—H2O···O1i0.821.682.482 (12)167
Table 1

Selected bond lengths (Å)

I1—Cu12.928 (2)
Cu1—O12.030 (9)
Cu1—N22.058 (11)
Cu1—N12.059 (10)
Cu1—O22.010 (8)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O1i0.821.682.482 (12)167

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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