Literature DB >> 22589079

Strong and selective binding of amiloride to an abasic site in RNA duplexes: thermodynamic characterization and microRNA detection.

Yusuke Sato1, Toshiki Ichihashi, Seiichi Nishizawa, Norio Teramae.   

Abstract

Firmly tied: The binding affinity of amiloride for an abasic (AP) site-containing RNA duplex is two orders of magnitude superior to the affinity of the corresponding AP site-containing DNA duplex. The observed high binding affinity for the RNA duplex arises from a favorable enthalpy gain. The binding-induced fluorescence response of amiloride is applicable to microRNA detection.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22589079     DOI: 10.1002/anie.201201790

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  5 in total

1.  Design of a fluorogenic PNA probe capable of simultaneous recognition of 3'-overhang and double-stranded sequences of small interfering RNAs.

Authors:  Takaaki Tanabe; Takaya Sato; Yusuke Sato; Seiichi Nishizawa
Journal:  RSC Adv       Date:  2018-12-18       Impact factor: 4.036

2.  Molecular mechanisms of hypoxic responses via unique roles of Ras1, Cdc24 and Ptp3 in a human fungal pathogen Cryptococcus neoformans.

Authors:  Yun C Chang; Ami Khanal Lamichhane; H Martin Garraffo; Peter J Walter; Maarten Leerkes; Kyung J Kwon-Chung
Journal:  PLoS Genet       Date:  2014-04-24       Impact factor: 5.917

3.  Reactive OFF-ON type alkylating agents for higher-ordered structures of nucleic acids.

Authors:  Kazumitsu Onizuka; Madoka E Hazemi; Norihiro Sato; Gen-Ichiro Tsuji; Shunya Ishikawa; Mamiko Ozawa; Kousuke Tanno; Ken Yamada; Fumi Nagatsugi
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

4.  Deep-red fluorogenic cyanine dyes carrying an amino group-terminated side chain for improved RNA detection and nucleolar RNA imaging.

Authors:  Yusuke Sato; Yugo Igarashi; Michiyuki Suzuki; Kei Higuchi; Seiichi Nishizawa
Journal:  RSC Adv       Date:  2021-11-17       Impact factor: 3.361

5.  Bright and Light-Up Sensing of Benzo[c,d]indole-oxazolopyridine Cyanine Dye for RNA and Its Application to Highly Sensitive Imaging of Nucleolar RNA in Living Cells.

Authors:  Kei Higuchi; Yusuke Sato; Nao Togashi; Michiyuki Suzuki; Yukina Yoshino; Seiichi Nishizawa
Journal:  ACS Omega       Date:  2022-06-29
  5 in total

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