Literature DB >> 22585165

Tackling formalin-fixed, paraffin-embedded tumor tissue with next-generation sequencing.

Christopher L Corless1, Paul T Spellman.   

Abstract

Most tumor samples available for clinical genotyping are formalin-fixed and paraffin-embedded (FFPE), but there has been relatively little published on the suitability of such samples for next-generation sequencing approaches. A new study by Wagle and colleagues shows that a combination of hybridization-capture and deep sequencing yields high-quality data from FFPE specimens.

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Year:  2012        PMID： 22585165     DOI： 10.1158/2159-8290.CD-11-0319

Source DB:  PubMed          Journal:  Cancer Discov        ISSN： 2159-8274            Impact factor:   39.397


  7 in total

1.  Performance of amplicon-based next generation DNA sequencing for diagnostic gene mutation profiling in oncopathology.

Authors:  Daoud Sie; Peter J F Snijders; Gerrit A Meijer; Marije W Doeleman; Marinda I H van Moorsel; Hendrik F van Essen; Paul P Eijk; Katrien Grünberg; Nicole C T van Grieken; Erik Thunnissen; Henk M Verheul; Egbert F Smit; Bauke Ylstra; Daniëlle A M Heideman
Journal:  Cell Oncol (Dordr)       Date:  2014-09-11       Impact factor: 6.730

Review 2.  Navigating the rapids: the development of regulated next-generation sequencing-based clinical trial assays and companion diagnostics.

Authors:  Saumya Pant; Russell Weiner; Matthew J Marton
Journal:  Front Oncol       Date:  2014-04-17       Impact factor: 6.244

3.  Touch imprint cytology with massively parallel sequencing (TIC-seq): a simple and rapid method to snapshot genetic alterations in tumors.

Authors:  Kenji Amemiya; Yosuke Hirotsu; Taichiro Goto; Hiroshi Nakagomi; Hitoshi Mochizuki; Toshio Oyama; Masao Omata
Journal:  Cancer Med       Date:  2016-10-24       Impact factor: 4.452

4.  Tumor-Informed Approach Improved ctDNA Detection Rate in Resected Pancreatic Cancer.

Authors:  Kazunori Watanabe; Toru Nakamura; Yasutoshi Kimura; Masayo Motoya; Shigeyuki Kojima; Tomotaka Kuraya; Takeshi Murakami; Tsukasa Kaneko; Yoshihito Shinohara; Yosuke Kitayama; Keito Fukuda; Kanako C Hatanaka; Tomoko Mitsuhashi; Fabio Pittella-Silva; Toshikazu Yamaguchi; Satoshi Hirano; Yusuke Nakamura; Siew-Kee Low
Journal:  Int J Mol Sci       Date:  2022-09-29       Impact factor: 6.208

5.  DNA qualification workflow for next generation sequencing of histopathological samples.

Authors:  Michele Simbolo; Marisa Gottardi; Vincenzo Corbo; Matteo Fassan; Andrea Mafficini; Giorgio Malpeli; Rita T Lawlor; Aldo Scarpa
Journal:  PLoS One       Date:  2013-06-06       Impact factor: 3.240

6.  Robustness of Next Generation Sequencing on Older Formalin-Fixed Paraffin-Embedded Tissue.

Authors:  Danielle Mercatante Carrick; Michele G Mehaffey; Michael C Sachs; Sean Altekruse; Corinne Camalier; Rodrigo Chuaqui; Wendy Cozen; Biswajit Das; Brenda Y Hernandez; Chih-Jian Lih; Charles F Lynch; Hala Makhlouf; Paul McGregor; Lisa M McShane; JoyAnn Phillips Rohan; William D Walsh; Paul M Williams; Elizabeth M Gillanders; Leah E Mechanic; Sheri D Schully
Journal:  PLoS One       Date:  2015-07-29       Impact factor: 3.240

7.  Comparison of pre-analytical FFPE sample preparation methods and their impact on massively parallel sequencing in routine diagnostics.

Authors:  Carina Heydt; Jana Fassunke; Helen Künstlinger; Michaela Angelika Ihle; Katharina König; Lukas Carl Heukamp; Hans-Ulrich Schildhaus; Margarete Odenthal; Reinhard Büttner; Sabine Merkelbach-Bruse
Journal:  PLoS One       Date:  2014-08-08       Impact factor: 3.240
  7 in total

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