Literature DB >> 22583204

Optimizing transition states via kernel-based machine learning.

Zachary D Pozun1, Katja Hansen, Daniel Sheppard, Matthias Rupp, Klaus-Robert Müller, Graeme Henkelman.   

Abstract

We present a method for optimizing transition state theory dividing surfaces with support vector machines. The resulting dividing surfaces require no a priori information or intuition about reaction mechanisms. To generate optimal dividing surfaces, we apply a cycle of machine-learning and refinement of the surface by molecular dynamics sampling. We demonstrate that the machine-learned surfaces contain the relevant low-energy saddle points. The mechanisms of reactions may be extracted from the machine-learned surfaces in order to identify unexpected chemically relevant processes. Furthermore, we show that the machine-learned surfaces significantly increase the transmission coefficient for an adatom exchange involving many coupled degrees of freedom on a (100) surface when compared to a distance-based dividing surface.

Mesh:

Year:  2012        PMID: 22583204     DOI: 10.1063/1.4707167

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Transition Manifolds of Complex Metastable Systems: Theory and Data-Driven Computation of Effective Dynamics.

Authors:  Andreas Bittracher; Péter Koltai; Stefan Klus; Ralf Banisch; Michael Dellnitz; Christof Schütte
Journal:  J Nonlinear Sci       Date:  2017-10-12       Impact factor: 3.621

2.  Bypassing the Kohn-Sham equations with machine learning.

Authors:  Felix Brockherde; Leslie Vogt; Li Li; Mark E Tuckerman; Kieron Burke; Klaus-Robert Müller
Journal:  Nat Commun       Date:  2017-10-11       Impact factor: 14.919

Review 3.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

4.  Machine learning estimates of natural product conformational energies.

Authors:  Matthias Rupp; Matthias R Bauer; Rainer Wilcken; Andreas Lange; Michael Reutlinger; Frank M Boeckler; Gisbert Schneider
Journal:  PLoS Comput Biol       Date:  2014-01-16       Impact factor: 4.475

5.  Machine learning bandgaps of double perovskites.

Authors:  G Pilania; A Mannodi-Kanakkithodi; B P Uberuaga; R Ramprasad; J E Gubernatis; T Lookman
Journal:  Sci Rep       Date:  2016-01-19       Impact factor: 4.379

6.  Direct Learning Hidden Excited State Interaction Patterns from ab initio Dynamics and Its Implication as Alternative Molecular Mechanism Models.

Authors:  Fang Liu; Likai Du; Dongju Zhang; Jun Gao
Journal:  Sci Rep       Date:  2017-08-18       Impact factor: 4.379

7.  ElemNet: Deep Learning the Chemistry of Materials From Only Elemental Composition.

Authors:  Dipendra Jha; Logan Ward; Arindam Paul; Wei-Keng Liao; Alok Choudhary; Chris Wolverton; Ankit Agrawal
Journal:  Sci Rep       Date:  2018-12-04       Impact factor: 4.379

8.  Artificial intelligence: machine learning for chemical sciences.

Authors:  Akshaya Karthikeyan; U Deva Priyakumar
Journal:  J Chem Sci (Bangalore)       Date:  2021-12-21

9.  Enhancing materials property prediction by leveraging computational and experimental data using deep transfer learning.

Authors:  Dipendra Jha; Kamal Choudhary; Francesca Tavazza; Wei-Keng Liao; Alok Choudhary; Carelyn Campbell; Ankit Agrawal
Journal:  Nat Commun       Date:  2019-11-22       Impact factor: 14.919

  9 in total

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