Literature DB >> 22582384

Genome sequence of Sphingomonas sp. strain PAMC 26621, an Arctic-lichen-associated bacterium isolated from a Cetraria sp.

Hyoungseok Lee1, Seung Chul Shin, Jungeun Lee, Su Jin Kim, Bum-Keun Kim, Soon Gyu Hong, Eun Hye Kim, Hyun Park.   

Abstract

The lichen-associated bacterial strain Sphingomonas sp. PAMC 26621 was isolated from an Arctic lichen Cetraria sp. on Svalbard Islands. Here we report the draft genome sequence of this strain, which could provide novel insights into the molecular principles of lichen-microbe interactions.

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Year:  2012        PMID： 22582384      PMCID： PMC3370613          DOI： 10.1128/JB.00395-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Bacterial communities associated with the lichen symbiosis.

Authors:  Scott T Bates; Garrett W G Cropsey; J Gregory Caporaso; Rob Knight; Noah Fierer
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 3.  Polycyclic aromatic hydrocarbon bioremediation design.

Authors:  S Harayama
Journal:  Curr Opin Biotechnol       Date:  1997-06       Impact factor: 9.740

4.  Bacterial diversity across individual lichens.

Authors:  Alexandra A Mushegian; Celeste N Peterson; Christopher C M Baker; Anne Pringle
Journal:  Appl Environ Microbiol       Date:  2011-04-29       Impact factor: 4.792

5.  Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome.

Authors:  Brendan P Hodkinson; Neil R Gottel; Christopher W Schadt; François Lutzoni
Journal:  Environ Microbiol       Date:  2011-09-12       Impact factor: 5.491

6.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

7.  Characterization of Sphingomonas sp. Ant 17, an aromatic hydrocarbon-degrading bacterium isolated from Antarctic soil.

Authors:  C A Baraniecki; J Aislabie; J M Foght
Journal:  Microb Ecol       Date:  2002-01-23       Impact factor: 4.552

8.  Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface.

Authors:  T Shi; J K Fredrickson; D L Balkwill
Journal:  J Ind Microbiol Biotechnol       Date:  2001-05       Impact factor: 3.346

9.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  5 in total

1.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

Review 2.  3D biofilms: in search of the polysaccharides holding together lichen symbioses.

Authors:  Toby Spribille; Gulnara Tagirdzhanova; Spencer Goyette; Veera Tuovinen; Rebecca Case; Wesley F Zandberg
Journal:  FEMS Microbiol Lett       Date:  2020-03-01       Impact factor: 2.742

3.  Simultaneous Presence of Bacteriochlorophyll and Xanthorhodopsin Genes in a Freshwater Bacterium.

Authors:  Karel Kopejtka; Jürgen Tomasch; Yonghui Zeng; Vadim Selyanin; Marko Dachev; Kasia Piwosz; Martin Tichý; David Bína; Zdenko Gardian; Boyke Bunk; Henner Brinkmann; Robert Geffers; Ruben Sommaruga; Michal Koblížek
Journal:  mSystems       Date:  2020-12-22       Impact factor: 6.496

4.  Essential roles of buried phenylalanine in the structural stability of thioredoxin from a psychrophilic Arctic bacterium Sphingomonas sp.

Authors:  Thu-Thuy Nguyen; Trang Hoang; Kiet N Tran; Hyeonji Kim; Sei-Heon Jang; ChangWoo Lee
Journal:  PLoS One       Date:  2021-12-15       Impact factor: 3.240

5.  Comprehensive Genome Analysis on the Novel Species Sphingomonas panacis DCY99T Reveals Insights into Iron Tolerance of Ginseng.

Authors:  Yeon-Ju Kim; Joon Young Park; Sri Renukadevi Balusamy; Yue Huo; Linh Khanh Nong; Hoa Thi Le; Deok Chun Yang; Donghyuk Kim
Journal:  Int J Mol Sci       Date:  2020-03-16       Impact factor: 5.923
  5 in total

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