Literature DB >> 22582382

Draft genome sequences of the diarrheagenic Escherichia coli collection.

Tracy H Hazen1, Jason W Sahl, Julia C Redman, Carolyn R Morris, Sean C Daugherty, Marcus C Chibucos, Naomi A Sengamalay, Claire M Fraser-Liggett, Hans Steinsland, Thomas S Whittam, Beth Whittam, Shannon D Manning, David A Rasko.   

Abstract

We report the draft genome sequences of the collection referred to as the Escherichia coli DECA collection, which was assembled to contain representative isolates of the 15 most common diarrheagenic clones in humans (http://shigatox.net/new/). These genomes represent a valuable resource to the community of researchers who examine these enteric pathogens.

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Year:  2012        PMID： 22582382      PMCID： PMC3370608          DOI： 10.1128/JB.00426-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation.

Authors:  Jason W Sahl; Hans Steinsland; Julia C Redman; Samuel V Angiuoli; James P Nataro; Halvor Sommerfelt; David A Rasko
Journal:  Infect Immun       Date:  2010-11-15       Impact factor: 3.441

2.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

3.  Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4.

Authors:  Holger Rohde; Junjie Qin; Yujun Cui; Dongfang Li; Nicholas J Loman; Moritz Hentschke; Wentong Chen; Fei Pu; Yangqing Peng; Junhua Li; Feng Xi; Shenghui Li; Yin Li; Zhaoxi Zhang; Xianwei Yang; Meiru Zhao; Peng Wang; Yuanlin Guan; Zhong Cen; Xiangna Zhao; Martin Christner; Robin Kobbe; Sebastian Loos; Jun Oh; Liang Yang; Antoine Danchin; George F Gao; Yajun Song; Yingrui Li; Huanming Yang; Jian Wang; Jianguo Xu; Mark J Pallen; Jun Wang; Martin Aepfelbacher; Ruifu Yang
Journal:  N Engl J Med       Date:  2011-07-27       Impact factor: 91.245

4.  Parallel evolution of virulence in pathogenic Escherichia coli.

Authors:  S D Reid; C J Herbelin; A C Bumbaugh; R K Selander; T S Whittam
Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

5.  Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation.

Authors:  David A Rasko; Patricia L Worsham; Terry G Abshire; Scott T Stanley; Jason D Bannan; Mark R Wilson; Richard J Langham; R Scott Decker; Lingxia Jiang; Timothy D Read; Adam M Phillippy; Steven L Salzberg; Mihai Pop; Matthew N Van Ert; Leo J Kenefic; Paul S Keim; Claire M Fraser-Liggett; Jacques Ravel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain.

Authors:  Matthew N Van Ert; W Ryan Easterday; Tatum S Simonson; Jana M U'Ren; Talima Pearson; Leo J Kenefic; Joseph D Busch; Lynn Y Huynh; Megan Dukerich; Carla B Trim; Jodi Beaudry; Amy Welty-Bernard; Timothy Read; Claire M Fraser; Jacques Ravel; Paul Keim
Journal:  J Clin Microbiol       Date:  2006-11-08       Impact factor: 5.948

7.  Global burden of Shigella infections: implications for vaccine development and implementation of control strategies.

Authors:  K L Kotloff; J P Winickoff; B Ivanoff; J D Clemens; D L Swerdlow; P J Sansonetti; G K Adak; M M Levine
Journal:  Bull World Health Organ       Date:  1999       Impact factor: 9.408

8.  The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

Authors:  David A Rasko; M J Rosovitz; Garry S A Myers; Emmanuel F Mongodin; W Florian Fricke; Pawel Gajer; Jonathan Crabtree; Mohammed Sebaihia; Nicholas R Thomson; Roy Chaudhuri; Ian R Henderson; Vanessa Sperandio; Jacques Ravel
Journal:  J Bacteriol       Date:  2008-08-01       Impact factor: 3.490

9.  Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock.

Authors:  Lance B Price; Marc Stegger; Henrik Hasman; Maliha Aziz; Jesper Larsen; Paal Skytt Andersen; Talima Pearson; Andrew E Waters; Jeffrey T Foster; James Schupp; John Gillece; Elizabeth Driebe; Cindy M Liu; Burkhard Springer; Irena Zdovc; Antonio Battisti; Alessia Franco; Jacek Zmudzki; Stefan Schwarz; Patrick Butaye; Eric Jouy; Constanca Pomba; M Concepción Porrero; Raymond Ruimy; Tara C Smith; D Ashley Robinson; J Scott Weese; Carmen Sofia Arriola; Fangyou Yu; Frederic Laurent; Paul Keim; Robert Skov; Frank M Aarestrup
Journal:  MBio       Date:  2012-02-21       Impact factor: 7.867

10.  Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Authors:  Marie Touchon; Claire Hoede; Olivier Tenaillon; Valérie Barbe; Simon Baeriswyl; Philippe Bidet; Edouard Bingen; Stéphane Bonacorsi; Christiane Bouchier; Odile Bouvet; Alexandra Calteau; Hélène Chiapello; Olivier Clermont; Stéphane Cruveiller; Antoine Danchin; Médéric Diard; Carole Dossat; Meriem El Karoui; Eric Frapy; Louis Garry; Jean Marc Ghigo; Anne Marie Gilles; James Johnson; Chantal Le Bouguénec; Mathilde Lescat; Sophie Mangenot; Vanessa Martinez-Jéhanne; Ivan Matic; Xavier Nassif; Sophie Oztas; Marie Agnès Petit; Christophe Pichon; Zoé Rouy; Claude Saint Ruf; Dominique Schneider; Jérôme Tourret; Benoit Vacherie; David Vallenet; Claudine Médigue; Eduardo P C Rocha; Erick Denamur
Journal:  PLoS Genet       Date:  2009-01-23       Impact factor: 5.917
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  10 in total

1.  Defining the phylogenomics of Shigella species: a pathway to diagnostics.

Authors:  Jason W Sahl; Carolyn R Morris; Jennifer Emberger; Claire M Fraser; John Benjamin Ochieng; Jane Juma; Barry Fields; Robert F Breiman; Matthew Gilmour; James P Nataro; David A Rasko
Journal:  J Clin Microbiol       Date:  2015-01-14       Impact factor: 5.948

2.  Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes.

Authors:  Fatemeh Sanjar; Brigida Rusconi; Tracy H Hazen; Sara S K Koenig; Mark K Mammel; Peter C H Feng; David A Rasko; Mark Eppinger
Journal:  Pathog Dis       Date:  2015-05-10       Impact factor: 3.166

3.  Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli.

Authors:  Tracy H Hazen; Jason W Sahl; Claire M Fraser; Michael S Donnenberg; Flemming Scheutz; David A Rasko
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

4.  Characteristics of emerging human-pathogenic Escherichia coli O26:H11 strains isolated in France between 2010 and 2013 and carrying the stx2d gene only.

Authors:  Sabine Delannoy; Patricia Mariani-Kurkdjian; Stephane Bonacorsi; Sandrine Liguori; Patrick Fach
Journal:  J Clin Microbiol       Date:  2014-11-26       Impact factor: 5.948

5.  Comparative Genomics Provides Insight into the Diversity of the Attaching and Effacing Escherichia coli Virulence Plasmids.

Authors:  Tracy H Hazen; James B Kaper; James P Nataro; David A Rasko
Journal:  Infect Immun       Date:  2015-08-03       Impact factor: 3.441

6.  Characterization of intracellular growth regulator icgR by utilizing transcriptomics to identify mediators of pathogenesis in Shigella flexneri.

Authors:  Carolyn R Morris; Christen L Grassel; Julia C Redman; Jason W Sahl; Eileen M Barry; David A Rasko
Journal:  Infect Immun       Date:  2013-06-10       Impact factor: 3.441

7.  Characterization of the bacterial gut microbiota of piglets suffering from new neonatal porcine diarrhoea.

Authors:  Marie Louise Hermann-Bank; Kerstin Skovgaard; Anders Stockmarr; Mikael Lenz Strube; Niels Larsen; Hanne Kongsted; Hans-Christian Ingerslev; Lars Mølbak; Mette Boye
Journal:  BMC Vet Res       Date:  2015-06-23       Impact factor: 2.741

8.  Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements.

Authors:  Kien-Pong Yap; Han Ming Gan; Cindy Shuan Ju Teh; Lay Ching Chai; Kwai Lin Thong
Journal:  BMC Genomics       Date:  2014-11-20       Impact factor: 3.969

9.  The Mobilome; A Major Contributor to Escherichia coli stx2-Positive O26:H11 Strains Intra-Serotype Diversity.

Authors:  Sabine Delannoy; Patricia Mariani-Kurkdjian; Hattie E Webb; Stephane Bonacorsi; Patrick Fach
Journal:  Front Microbiol       Date:  2017-09-06       Impact factor: 5.640

10.  Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a.

Authors:  Yoshitoshi Ogura; Kazuko Seto; Yo Morimoto; Keiji Nakamura; Mitsuhiko P Sato; Yasuhiro Gotoh; Takehiko Itoh; Atsushi Toyoda; Makoto Ohnishi; Tetsuya Hayashi
Journal:  Emerg Infect Dis       Date:  2018-12       Impact factor: 6.883
  10 in total

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