Literature DB >> 22582145

On-Bead Two-Color (OBTC) Cell Screen for Direct Identification of Highly Selective Cell Surface Receptor Ligands.

D Gomika Udugamasooriya1, Thomas Kodadek.   

Abstract

Combinatorial library screens can identify a suitable ligand for a biological target of interest out of thousands or even millions of compounds, and can play a key role in the modern drug development process. While conventional high-throughput cell screens based on functional assays require expensive robotics, simple on-bead combinatorial assays for ligand binding to the target protein can be done far more cheaply. This article describes one such assay, developed using combinatorial peptoid libraries for targeting integral membrane receptors or other cell surface-exposed molecules. In addition to the reduced cost, a unique advantage of this assay is the direct identification of the most selective ligands for a cell surface receptor that is expressed in its natural environment.

Entities:  

Year:  2012        PMID: 22582145      PMCID: PMC3348698          DOI: 10.1002/9780470559277.ch110199

Source DB:  PubMed          Journal:  Curr Protoc Chem Biol        ISSN: 2160-4762


  20 in total

1.  Quantum dots as a visual aid for screening bead-bound combinatorial libraries.

Authors:  Hernando J Olivos; Kiran Bachhawat-Sikder; Thomas Kodadek
Journal:  Chembiochem       Date:  2003-11-07       Impact factor: 3.164

Review 2.  An emerging role for kinase screening in GPCR drug discovery.

Authors:  Ronald I W Osmond; Michael F Crouch; Vincent J Dupriez
Journal:  Curr Opin Mol Ther       Date:  2010-06

3.  Cleavable hydrophilic linker for one-bead-one-compound sequencing of oligomer libraries by tandem mass spectrometry.

Authors:  Margot G Paulick; Kathryn M Hart; Kristin M Brinner; Meiliana Tjandra; Deborah H Charych; Ronald N Zuckermann
Journal:  J Comb Chem       Date:  2006 May-Jun

Review 4.  Label-free cell-based functional assays.

Authors:  Lisa K Minor
Journal:  Comb Chem High Throughput Screen       Date:  2008-08       Impact factor: 1.339

5.  Combinatorial chemistry identifies high-affinity peptidomimetics against alpha4beta1 integrin for in vivo tumor imaging.

Authors:  Li Peng; Ruiwu Liu; Jan Marik; Xiaobing Wang; Yoshikazu Takada; Kit S Lam
Journal:  Nat Chem Biol       Date:  2006-06-11       Impact factor: 15.040

6.  Cytokine levels correlate with immune cell infiltration after anti-VEGF therapy in preclinical mouse models of breast cancer.

Authors:  Christina L Roland; Kristi D Lynn; Jason E Toombs; Sean P Dineen; D Gomika Udugamasooriya; Rolf A Brekken
Journal:  PLoS One       Date:  2009-11-03       Impact factor: 3.240

7.  Isolation of antagonists of antigen-specific autoimmune T cell proliferation.

Authors:  Anne R Gocke; D Gomika Udugamasooriya; Chase T Archer; Jiyong Lee; Thomas Kodadek
Journal:  Chem Biol       Date:  2009-11-25

8.  Selective toxin sequestrants for the treatment of bacterial infections.

Authors:  Levi S Simpson; Lyle Burdine; Amal K Dutta; Andrew P Feranchak; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

9.  A peptoid antagonist of VEGF receptor 2 recognizes a 'hotspot' in the extracellular domain distinct from the hormone-binding site.

Authors:  D Gomika Udugamasooriya; Caroline Ritchie; Rolf A Brekken; Thomas Kodadek
Journal:  Bioorg Med Chem       Date:  2008-05-09       Impact factor: 3.641

10.  The pharmacophore of a peptoid VEGF receptor 2 antagonist includes both side chain and main chain residues.

Authors:  D Gomika Udugamasooriya; Geoff Dunham; Caroline Ritchie; Rolf A Brekken; Thomas Kodadek
Journal:  Bioorg Med Chem Lett       Date:  2008-07-10       Impact factor: 2.823

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  7 in total

Review 1.  High-Throughput Approaches to the Development of Molecular Imaging Agents.

Authors:  Lina Y Hu; Kimberly A Kelly; Julie L Sutcliffe
Journal:  Mol Imaging Biol       Date:  2017-04       Impact factor: 3.488

2.  γ-AApeptides: Design, Structure, and Applications.

Authors:  Yan Shi; Peng Teng; Peng Sang; Fengyu She; Lulu Wei; Jianfeng Cai
Journal:  Acc Chem Res       Date:  2016-02-22       Impact factor: 22.384

Review 3.  Structure and Function of AApeptides.

Authors:  Olapeju Bolarinwa; Alekhya Nimmagadda; Ma Su; Jianfeng Cai
Journal:  Biochemistry       Date:  2017-01-13       Impact factor: 3.162

4.  A novel peptidomimetic therapeutic for selective suppression of lung cancer stem cells over non-stem cancer cells.

Authors:  Satya Prakash Shukla; Aaron Raymond; Vineeta Rustagi; Samanth R Kedika; Olivia Tran; Liye Wang; Bin Guo; D Gomika Udugamasooriya
Journal:  Bioorg Chem       Date:  2021-09-08       Impact factor: 5.275

5.  Unbiased peptoid cell screen identifies a peptoid targeting newly appeared cell surface vimentin on tumor transformed early lung cancer cells.

Authors:  Satya Prakash Shukla; Haowen Zhang; Bingliang Fang; John D Minna; D Gomika Udugamasooriya
Journal:  Bioorg Med Chem       Date:  2022-02-15       Impact factor: 3.461

Review 6.  The identification of high-affinity G protein-coupled receptor ligands from large combinatorial libraries using multicolor quantum dot-labeled cell-based screening.

Authors:  Junjie Fu; Timothy Lee; Xin Qi
Journal:  Future Med Chem       Date:  2014-05       Impact factor: 3.808

7.  Unbiased Selection of Peptide-Peptoid Hybrids Specific for Lung Cancer Compared to Normal Lung Epithelial Cells.

Authors:  Jaya M Matharage; John D Minna; Rolf A Brekken; D Gomika Udugamasooriya
Journal:  ACS Chem Biol       Date:  2015-10-28       Impact factor: 5.100

  7 in total

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