Literature DB >> 22582076

Accessing the inaccessible: molecular tools for bifidobacteria.

Zhongke Sun1, Annika Baur, Daria Zhurina, Jing Yuan, Christian U Riedel.   

Abstract

Bifidobacteria are an important group of the human intestinal microbiota that have been shown to exert a number of beneficial probiotic effects on the health status of their host. Due to these effects, bifidobacteria have attracted strong interest in health care and food industries for probiotic applications and several species are listed as so-called "generally recognized as safe" (GRAS) microorganisms. Moreover, recent studies have pointed out their potential as an alternative or supplementary strategy in tumor therapy or as live vaccines. In order to study the mechanisms by which these organisms exert their beneficial effects and to generate recombinant strains that can be used as drug delivery vectors or live vaccines, appropriate molecular tools are indispensable. This review provides an overview of the currently available methods and tools to generate recombinant strains of bifidobacteria. The currently used protocols for transformation of bifidobacteria, as well as replicons, selection markers, and determinants of expression, will be summarized. We will further discuss promoters, terminators, and localization signals that have been used for successful generation of expression vectors.

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Year:  2012        PMID: 22582076      PMCID: PMC3416414          DOI: 10.1128/AEM.00551-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  88 in total

1.  Controlled gene expression in bifidobacteria by use of a bile-responsive element.

Authors:  Lorena Ruiz; Pablo Álvarez-Martín; Baltasar Mayo; Clara G de los Reyes-Gavilán; Miguel Gueimonde; Abelardo Margolles
Journal:  Appl Environ Microbiol       Date:  2011-11-11       Impact factor: 4.792

2.  Purification, amino acid sequence and mode of action of bifidocin B produced by Bifidobacterium bifidum NCFB 1454.

Authors:  Z Yildirim; D K Winters; M G Johnson
Journal:  J Appl Microbiol       Date:  1999-01       Impact factor: 3.772

3.  A Simple and Rapid Method for Genetic Transformation of Lactic Streptococci by Electroporation.

Authors:  Ian B Powell; Marc G Achen; Alan J Hillier; Barrie E Davidson
Journal:  Appl Environ Microbiol       Date:  1988-03       Impact factor: 4.792

4.  Construction of a reporter vector for the analysis of Bifidobacterium longum promoters.

Authors:  A Klijn; D Moine; M Delley; A Mercenier; F Arigoni; R D Pridmore
Journal:  Appl Environ Microbiol       Date:  2006-09-22       Impact factor: 4.792

5.  Exogenous cytosine deaminase gene expression in Bifidobacterium breve I-53-8w for tumor-targeting enzyme/prodrug therapy.

Authors:  Ayumi Hidaka; Yoshinori Hamaji; Takayuki Sasaki; Shun'ichiro Taniguchi; Minoru Fujimori
Journal:  Biosci Biotechnol Biochem       Date:  2007-12       Impact factor: 2.043

6.  Investigation of protein export in Bifidobacterium breve UCC2003.

Authors:  Laura E MacConaill; Gerald F Fitzgerald; Douwe Van Sinderen
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

7.  Molecular dissection of a bifidobacterial replicon.

Authors:  Michelle Cronin; Moritz Knobel; Mary O'Connell-Motherway; Gerald F Fitzgerald; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2007-10-26       Impact factor: 4.792

8.  In vitro CpG methylation increases the transformation efficiency of Borrelia burgdorferi strains harboring the endogenous linear plasmid lp56.

Authors:  Qiang Chen; Joshua R Fischer; Vivian M Benoit; Nicholas P Dufour; Philip Youderian; John M Leong
Journal:  J Bacteriol       Date:  2008-10-10       Impact factor: 3.490

9.  Transforming the untransformable: application of direct transformation to manipulate genetically Staphylococcus aureus and Staphylococcus epidermidis.

Authors:  Ian R Monk; Ishita M Shah; Min Xu; Man-Wah Tan; Timothy J Foster
Journal:  MBio       Date:  2012-03-20       Impact factor: 7.867

10.  Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice.

Authors:  Michelle Cronin; Roy D Sleator; Colin Hill; Gerald F Fitzgerald; Douwe van Sinderen
Journal:  BMC Microbiol       Date:  2008-09-24       Impact factor: 3.605

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  12 in total

1.  Tough nuts to crack: site-directed mutagenesis of bifidobacteria remains a challenge.

Authors:  Vincenzo F Brancaccio; Daria S Zhurina; Christian U Riedel
Journal:  Bioengineered       Date:  2013-01-11       Impact factor: 3.269

2.  Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium.

Authors:  Meichen Pan; Wesley Morovic; Claudio Hidalgo-Cantabrana; Avery Roberts; Kimberly K O Walden; Yong Jun Goh; Rodolphe Barrangou
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-20       Impact factor: 12.779

Review 3.  Potential applications of recombinant bifidobacterial proteins in the food industry, biomedicine, process innovation and glycobiology.

Authors:  José A Morales-Contreras; Jessica E Rodríguez-Pérez; Carlos A Álvarez-González; Mirian C Martínez-López; Isela E Juárez-Rojop; Ángela Ávila-Fernández
Journal:  Food Sci Biotechnol       Date:  2021-08-03       Impact factor: 3.231

4.  Expression of fluorescent proteins in bifidobacteria for analysis of host-microbe interactions.

Authors:  Verena Grimm; Marita Gleinser; Caroline Neu; Daria Zhurina; Christian U Riedel
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

5.  Experimental determination and characterization of the gap promoter of Bifidobacterium bifidum S17.

Authors:  Zhongke Sun; Christina Westermann; Jing Yuan; Christian U Riedel
Journal:  Bioengineered       Date:  2014-10-30       Impact factor: 3.269

Review 6.  Fluorescent reporter systems for tracking probiotic lactic acid bacteria and bifidobacteria.

Authors:  José M Landete; Margarita Medina; Juan L Arqués
Journal:  World J Microbiol Biotechnol       Date:  2016-06-04       Impact factor: 3.312

7.  The essential genomic landscape of the commensal Bifidobacterium breve UCC2003.

Authors:  Lorena Ruiz; Francesca Bottacini; Christine J Boinett; Amy K Cain; Mary O'Connell-Motherway; Trevor D Lawley; Douwe van Sinderen
Journal:  Sci Rep       Date:  2017-07-17       Impact factor: 4.379

8.  Transposon mutagenesis in Bifidobacterium breve: construction and characterization of a Tn5 transposon mutant library for Bifidobacterium breve UCC2003.

Authors:  Lorena Ruiz; Mary O'Connell Motherway; Noreen Lanigan; Douwe van Sinderen
Journal:  PLoS One       Date:  2013-05-30       Impact factor: 3.240

9.  Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis.

Authors:  Mary O' Connell Motherway; Debbie Watson; Francesca Bottacini; Tyson A Clark; Richard J Roberts; Jonas Korlach; Peggy Garault; Christian Chervaux; Johan E T van Hylckama Vlieg; Tamara Smokvina; Douwe van Sinderen
Journal:  PLoS One       Date:  2014-04-17       Impact factor: 3.240

Review 10.  Bifidobacteria and Their Role as Members of the Human Gut Microbiota.

Authors:  Amy O'Callaghan; Douwe van Sinderen
Journal:  Front Microbiol       Date:  2016-06-15       Impact factor: 5.640

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