Literature DB >> 22581980

MODELING OF GENE REGULATORY PROCESSES BY POPULATION MEDIATED SIGNALING. NEW APPLICATIONS OF POPULATION BALANCES.

Che-Chi Shu1, Anushree Chatterjee, Wei-Shou Hu, Doraiswami Ramkrishna.   

Abstract

Population balance modeling is considered for cell populations in gene regulatory processes in which one or more intracellular variables undergo stochastic dynamics as determined by Ito stochastic differential equations. This paper addresses formulation and computational issues with sample applications to the spread of drug resistance among bacterial cells. It is shown that predictions from population balances can display qualitative differences from those made with single cell models which are usually encountered in the literature. Such differences are deemed to be important.

Entities:  

Year:  2011        PMID: 22581980      PMCID: PMC3347889          DOI: 10.1016/j.ces.2011.07.062

Source DB:  PubMed          Journal:  Chem Eng Sci        ISSN: 0009-2509            Impact factor:   4.311


  24 in total

1.  Cell-associated pheromone peptide (cCF10) production and pheromone inhibition in Enterococcus faecalis.

Authors:  B A Buttaro; M H Antiporta; G M Dunny
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

2.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Mutants of Enterococcus faecalis deficient as recipients in mating with donors carrying pheromone-inducible plasmids.

Authors:  K M Trotter; G M Dunny
Journal:  Plasmid       Date:  1990-07       Impact factor: 3.466

4.  Direct evidence for control of the pheromone-inducible prgQ operon of Enterococcus faecalis plasmid pCF10 by a countertranscript-driven attenuation mechanism.

Authors:  Christopher M Johnson; Dawn A Manias; Heather A H Haemig; Sonia Shokeen; Keith E Weaver; Tina M Henkin; Gary M Dunny
Journal:  J Bacteriol       Date:  2010-01-22       Impact factor: 3.490

5.  The prgQ gene of the Enterococcus faecalis tetracycline resistance plasmid pCF10 encodes a peptide inhibitor, iCF10.

Authors:  J Nakayama; R E Ruhfel; G M Dunny; A Isogai; A Suzuki
Journal:  J Bacteriol       Date:  1994-12       Impact factor: 3.490

6.  Numerical evaluation of path-integral solutions to Fokker-Planck equations. III. Time and functionally dependent coefficients.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1987-02-15

7.  Pheromone-inducible expression of an aggregation protein in Enterococcus faecalis requires interaction of a plasmid-encoded RNA with components of the ribosome.

Authors:  B A Bensing; G M Dunny
Journal:  Mol Microbiol       Date:  1997-04       Impact factor: 3.501

8.  Esp-independent biofilm formation by Enterococcus faecalis.

Authors:  Christopher J Kristich; Yung-Hua Li; Dennis G Cvitkovitch; Gary M Dunny
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

9.  An amino-terminal domain of Enterococcus faecalis aggregation substance is required for aggregation, bacterial internalization by epithelial cells and binding to lipoteichoic acid.

Authors:  Christopher M Waters; Helmut Hirt; John K McCormick; Patrick M Schlievert; Carol L Wells; G M Dunny
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

10.  Enterococcus faecalis pheromone binding protein, PrgZ, recruits a chromosomal oligopeptide permease system to import sex pheromone cCF10 for induction of conjugation.

Authors:  B A Leonard; A Podbielski; P J Hedberg; G M Dunny
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

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  4 in total

1.  Coarse-grained analysis of stochastically simulated cell populations with a positive feedback genetic network architecture.

Authors:  I G Aviziotis; M E Kavousanakis; I A Bitsanis; A G Boudouvis
Journal:  J Math Biol       Date:  2014-06-15       Impact factor: 2.259

2.  Effect of Intrinsic Noise on the Phenotype of Cell Populations Featuring Solution Multiplicity: An Artificial lac Operon Network Paradigm.

Authors:  Ioannis G Aviziotis; Michail E Kavousanakis; Andreas G Boudouvis
Journal:  PLoS One       Date:  2015-07-17       Impact factor: 3.240

3.  Inhibitors Alter the Stochasticity of Regulatory Proteins to Force Cells to Switch to the Other State in the Bistable System.

Authors:  Wun-Sin Jhang; Shih-Chiang Lo; Chen-Chao Yeh; Che-Chi Shu
Journal:  Sci Rep       Date:  2017-06-30       Impact factor: 4.379

4.  Role of intracellular stochasticity in biofilm growth. Insights from population balance modeling.

Authors:  Che-Chi Shu; Anushree Chatterjee; Wei-Shou Hu; Doraiswami Ramkrishna
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

  4 in total

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