Literature DB >> 22576171

The Hematopoietic Expression Viewer: expanding mobile apps as a scientific tool.

Regis A James1, Mitchell M Rao, Edward S Chen, Margaret A Goodell, Chad A Shaw.   

Abstract

UNLABELLED: Many important data in current biological science comprise hundreds, thousands or more individual results. These massive data require computational tools to navigate results and effectively interact with the content. Mobile device apps are an increasingly important tool in the everyday lives of scientists and non-scientists alike. These software present individuals with compact and efficient tools to interact with complex data at meetings or other locations remote from their main computing environment. We believe that apps will be important tools for biologists, geneticists and physicians to review content while participating in biomedical research or practicing medicine. We have developed a prototype app for displaying gene expression data using the iOS platform. To present the software engineering requirements, we review the model-view-controller schema for Apple's iOS. We apply this schema to a simple app for querying locally developed microarray gene expression data. The challenge of this application is to balance between storing content locally within the app versus obtaining it dynamically via a network connection. AVAILABILITY: The Hematopoietic Expression Viewer is available at http://www.shawlab.org/he_viewer. The source code for this project and any future information on how to obtain the app can be accessed at http://www.shawlab.org/he_viewer.

Entities:  

Mesh:

Year:  2012        PMID: 22576171      PMCID: PMC3491999          DOI: 10.1093/bioinformatics/bts279

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  The Immunological Genome Project: networks of gene expression in immune cells.

Authors:  Tracy S P Heng; Michio W Painter
Journal:  Nat Immunol       Date:  2008-10       Impact factor: 25.606

2.  Hematopoietic fingerprints: an expression database of stem cells and their progeny.

Authors:  Stuart M Chambers; Nathan C Boles; Kuan-Yin K Lin; Megan P Tierney; Teresa V Bowman; Steven B Bradfute; Alice J Chen; Akil A Merchant; Olga Sirin; David C Weksberg; Mehveen G Merchant; C Joseph Fisk; Chad A Shaw; Margaret A Goodell
Journal:  Cell Stem Cell       Date:  2007-11       Impact factor: 24.633

3.  TimeTree2: species divergence times on the iPhone.

Authors:  Sudhir Kumar; S Blair Hedges
Journal:  Bioinformatics       Date:  2011-05-26       Impact factor: 6.937

4.  Molecular portraits of human breast tumours.

Authors:  C M Perou; T Sørlie; M B Eisen; M van de Rijn; S S Jeffrey; C A Rees; J R Pollack; D T Ross; H Johnsen; L A Akslen; O Fluge; A Pergamenschikov; C Williams; S X Zhu; P E Lønning; A L Børresen-Dale; P O Brown; D Botstein
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

  4 in total
  4 in total

1.  Exploring spatial patterns of gene expression from fruit fly embryogenesis on the iPhone.

Authors:  Sudhir Kumar; Kelly Boccia; Michael McCutchan; Jieping Ye
Journal:  Bioinformatics       Date:  2012-08-24       Impact factor: 6.937

2.  An interactive web application for the dissemination of human systems immunology data.

Authors:  Cate Speake; Scott Presnell; Kelly Domico; Brad Zeitner; Anna Bjork; David Anderson; Michael J Mason; Elizabeth Whalen; Olivia Vargas; Dimitry Popov; Darawan Rinchai; Noemie Jourde-Chiche; Laurent Chiche; Charlie Quinn; Damien Chaussabel
Journal:  J Transl Med       Date:  2015-06-19       Impact factor: 5.531

3.  GeneStoryTeller: a mobile app for quick and comprehensive information retrieval of human genes.

Authors:  Stergiani V Eleftheriou; Marilena M Bourdakou; Emmanouil I Athanasiadis; George M Spyrou
Journal:  Database (Oxford)       Date:  2015-06-08       Impact factor: 3.451

4.  RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

Authors:  Gregory B Quinn; Chunxiao Bi; Cole H Christie; Kyle Pang; Andreas Prlić; Takanori Nakane; Christine Zardecki; Maria Voigt; Helen M Berman; Philip E Bourne; Peter W Rose
Journal:  Bioinformatics       Date:  2014-09-02       Impact factor: 6.937

  4 in total

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