Literature DB >> 22575759

From modules to medicine: How modular domains and their associated networks can enable personalized medicine.

Eric B Haura1.   

Abstract

Unveiling of cancer genomes is unleashing new therapeutic strategies for cancer. With cancer parts lists in hand, new approaches to personalized medicine can be developed by understanding the assembly of cancer machines using modular domains in proteins and their associated networks. Using the Src-homology-2 (SH2) domain as an example, new profiling approaches can discern global patterns of tyrosine phosphorylation in cancer cells that can enable molecular cancer medicine. Identifying and quantifying protein-protein interactions also has the potential to subtype tumors and guide clinical decision making. These approaches should extend the impact of genomics through viewing the architecture of cancer systems and improve predictions of patient outcome and therapeutic response, as well as guide combination therapy approaches that attack cancer systems.
Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22575759      PMCID: PMC4084654          DOI: 10.1016/j.febslet.2012.04.036

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  64 in total

1.  David A. Karnofsky Award lecture. Imatinib as a paradigm of targeted therapies.

Authors:  Brian J Druker
Journal:  J Clin Oncol       Date:  2003-12-01       Impact factor: 44.544

Review 2.  The SH2 domain: versatile signaling module and pharmaceutical target.

Authors:  Kazuya Machida; Bruce J Mayer
Journal:  Biochim Biophys Acta       Date:  2004-11-19

3.  Quantitative multiplexed profiling of cellular signaling networks using phosphotyrosine-specific DNA-tagged SH2 domains.

Authors:  Kevin Dierck; Kazuya Machida; Anja Voigt; Julian Thimm; Martin Horstmann; Walter Fiedler; Bruce J Mayer; Peter Nollau
Journal:  Nat Methods       Date:  2006-09       Impact factor: 28.547

4.  The human disease network.

Authors:  Kwang-Il Goh; Michael E Cusick; David Valle; Barton Childs; Marc Vidal; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

5.  Drug-target network.

Authors:  Muhammed A Yildirim; Kwang-Il Goh; Michael E Cusick; Albert-László Barabási; Marc Vidal
Journal:  Nat Biotechnol       Date:  2007-10       Impact factor: 54.908

6.  ROS1 rearrangements define a unique molecular class of lung cancers.

Authors:  Kristin Bergethon; Alice T Shaw; Sai-Hong Ignatius Ou; Ryohei Katayama; Christine M Lovly; Nerina T McDonald; Pierre P Massion; Christina Siwak-Tapp; Adriana Gonzalez; Rong Fang; Eugene J Mark; Julie M Batten; Haiquan Chen; Keith D Wilner; Eunice L Kwak; Jeffrey W Clark; David P Carbone; Hongbin Ji; Jeffrey A Engelman; Mari Mino-Kenudson; William Pao; A John Iafrate
Journal:  J Clin Oncol       Date:  2012-01-03       Impact factor: 44.544

7.  From mitochondrial biology to magic bullet: navitoclax disarms BCL-2 in chronic lymphocytic leukemia.

Authors:  Loren D Walensky
Journal:  J Clin Oncol       Date:  2011-12-19       Impact factor: 44.544

8.  A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.

Authors:  Janghoo Lim; Tong Hao; Chad Shaw; Akash J Patel; Gábor Szabó; Jean-François Rual; C Joseph Fisk; Ning Li; Alex Smolyar; David E Hill; Albert-László Barabási; Marc Vidal; Huda Y Zoghbi
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

9.  Direct observation of individual endogenous protein complexes in situ by proximity ligation.

Authors:  Ola Söderberg; Mats Gullberg; Malin Jarvius; Karin Ridderstråle; Karl-Johan Leuchowius; Jonas Jarvius; Kenneth Wester; Per Hydbring; Fuad Bahram; Lars-Gunnar Larsson; Ulf Landegren
Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

10.  Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer.

Authors:  Klarisa Rikova; Ailan Guo; Qingfu Zeng; Anthony Possemato; Jian Yu; Herbert Haack; Julie Nardone; Kimberly Lee; Cynthia Reeves; Yu Li; Yerong Hu; Zhiping Tan; Matthew Stokes; Laura Sullivan; Jeffrey Mitchell; Randy Wetzel; Joan Macneill; Jian Min Ren; Jin Yuan; Corey E Bakalarski; Judit Villen; Jon M Kornhauser; Bradley Smith; Daiqiang Li; Xinmin Zhou; Steven P Gygi; Ting-Lei Gu; Roberto D Polakiewicz; John Rush; Michael J Comb
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

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  7 in total

1.  Peptide receptor radionuclide therapy in a patient with disabling non-functioning pituitary adenoma.

Authors:  Jan Komor; Jean Claude Reubi; Emanuel R Christ
Journal:  Pituitary       Date:  2014-06       Impact factor: 4.107

2.  Computational methods and opportunities for phosphorylation network medicine.

Authors:  Yian Ann Chen; Steven A Eschrich
Journal:  Transl Cancer Res       Date:  2014-06-01       Impact factor: 1.241

3.  Deciphering Phosphotyrosine-Dependent Signaling Networks in Cancer by SH2 Profiling.

Authors:  Kazuya Machida; Malik Khenkhar; Peter Nollau
Journal:  Genes Cancer       Date:  2012-05

Review 4.  Is phosphoproteomics ready for clinical research?

Authors:  Anton B Iliuk; W Andy Tao
Journal:  Clin Chim Acta       Date:  2012-11-13       Impact factor: 3.786

5.  Identification of two regions in the p140Cap adaptor protein that retain the ability to suppress tumor cell properties.

Authors:  Nanaocha Sharma; Daniele Repetto; Simona Aramu; Silvia Grasso; Isabella Russo; Arianna Fiorentino; Maurizia Mello-Grand; Sara Cabodi; Vijay Singh; Giovanna Chiorino; Emilia Turco; Paola Di Stefano; Paola Defilippi
Journal:  Am J Cancer Res       Date:  2013-06-20       Impact factor: 6.166

6.  Human Prostate Cancer Hallmarks Map.

Authors:  Dipamoy Datta; Md Aftabuddin; Dinesh Kumar Gupta; Sanghamitra Raha; Prosenjit Sen
Journal:  Sci Rep       Date:  2016-08-01       Impact factor: 4.379

7.  Functional characterization of phospholipase C-γ2 mutant protein causing both somatic ibrutinib resistance and a germline monogenic autoinflammatory disorder.

Authors:  Claudia Walliser; Martin Wist; Elisabeth Hermkes; Yuan Zhou; Anja Schade; Jennifer Haas; Julia Deinzer; Laurent Désiré; Shawn S C Li; Stephan Stilgenbauer; Joshua D Milner; Peter Gierschik
Journal:  Oncotarget       Date:  2018-09-28
  7 in total

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