Literature DB >> 22575486

A comparison between different reference genes for expression studies in human hippocampal tissue.

Claudia V Maurer-Morelli1, Jaira F de Vasconcellos, Fernanda C Reis-Pinto, Cristiane de S Rocha, Romenia R Domingues, Clarissa L Yasuda, Helder Tedeschi, Evandro De Oliveira, Fernando Cendes, Iscia Lopes-Cendes.   

Abstract

The reliability of gene expression studies by mRNA quantification is highly dependent upon several experimental procedures, including the choice of reference genes used for data normalization. In order to contribute to gene expression studies in mesial temporal lobe epilepsy (MTLE) we used microarray data, followed by real time quantitative PCR validation of selected housekeeping genes, to determine the most appropriate reference genes to be used in human hippocampal tissue gene expression studies. Our results unequivocally showed a significant impact of the reference gene chosen for normalization on the overall results of expression studies, clearly demonstrating the importance of adequate validation using stable reference genes. In addition, we found that HPRT, NSE, SDHA and SYP are suitable genes to be used as reference for normalization in expression studies of hippocampal tissue obtained from patients with MTLE.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22575486     DOI: 10.1016/j.jneumeth.2012.04.020

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  4 in total

1.  Validation of suitable reference genes for expression studies in different pilocarpine-induced models of mesial temporal lobe epilepsy.

Authors:  Thalita Ewellyn Batista Sales Marques; Leila Rodrigues de Mendonça; Marília Gabriela Pereira; Tiago Gomes de Andrade; Norberto Garcia-Cairasco; Maria Luisa Paçó-Larson; Daniel Leite Góes Gitaí
Journal:  PLoS One       Date:  2013-08-23       Impact factor: 3.240

2.  Identification of miRNAs differentially expressed in human epilepsy with or without granule cell pathology.

Authors:  Silvia Zucchini; Gianluca Marucci; Beatrice Paradiso; Giovanni Lanza; Paolo Roncon; Pierangelo Cifelli; Manuela Ferracin; Marco Giulioni; Roberto Michelucci; Guido Rubboli; Michele Simonato
Journal:  PLoS One       Date:  2014-08-22       Impact factor: 3.240

3.  Genome-wide DNA Methylation and RNAseq Analyses Identify Aberrant Signalling Pathways in Focal Cortical Dysplasia (FCD) Type II.

Authors:  Aparna Banerjee Dixit; Devina Sharma; Manjari Tripathi; Arpna Srivastava; Debasmita Paul; Deepak Prakash; Chitra Sarkar; Krishan Kumar; Jyotirmoy Banerjee; P Sarat Chandra
Journal:  Sci Rep       Date:  2018-12-19       Impact factor: 4.379

4.  The validation of Short Interspersed Nuclear Elements (SINEs) as a RT-qPCR normalization strategy in a rodent model for temporal lobe epilepsy.

Authors:  René A J Crans; Jana Janssens; Sofie Daelemans; Elise Wouters; Robrecht Raedt; Debby Van Dam; Peter P De Deyn; Kathleen Van Craenenbroeck; Christophe P Stove
Journal:  PLoS One       Date:  2019-01-10       Impact factor: 3.240

  4 in total

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