Literature DB >> 22575364

Atomic structure of a single large biomolecule from diffraction patterns of random orientations.

Miklós Tegze1, Gábor Bortel.   

Abstract

The short and intense pulses of the new X-ray free electron lasers, now operational or under construction, may make possible diffraction experiments on single molecule-sized objects with high resolution, before radiation damage destroys the sample. In a single molecule imaging (SMI) experiment thousands of diffraction patterns of single molecules with random orientations are recorded. One of the most challenging problems of SMI is how to assemble these noisy patterns of unknown orientations into a consistent single set of diffraction data. Here we present a new method which can solve the orientation problem of SMI efficiently even for large biological molecules and in the presence of noise. We show on simulated diffraction patterns of a large protein molecule, how the orientations of the patterns can be found and the structure to atomic resolution can be solved. The concept of our algorithm could be also applied to experiments where images of an object are recorded in unknown orientations and/or positions like in cryoEM or tomography.
Copyright © 2012 Elsevier Inc. All rights reserved.

Mesh:

Year:  2012        PMID: 22575364     DOI: 10.1016/j.jsb.2012.04.014

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  12 in total

1.  Reconstruction from limited single-particle diffraction data via simultaneous determination of state, orientation, intensity, and phase.

Authors:  Jeffrey J Donatelli; James A Sethian; Peter H Zwart
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

2.  The correlation of single-particle diffraction patterns as a continuous function of particle orientation.

Authors:  Andrew V Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

3.  The indexing ambiguity in serial femtosecond crystallography (SFX) resolved using an expectation maximization algorithm.

Authors:  Haiguang Liu; John C H Spence
Journal:  IUCrJ       Date:  2014-09-23       Impact factor: 4.769

4.  Mapping the continuous reciprocal space intensity distribution of X-ray serial crystallography.

Authors:  Oleksandr Yefanov; Cornelius Gati; Gleb Bourenkov; Richard A Kirian; Thomas A White; John C H Spence; Henry N Chapman; Anton Barty
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

5.  A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser.

Authors:  Chun Hong Yoon; Mikhail V Yurkov; Evgeny A Schneidmiller; Liubov Samoylova; Alexey Buzmakov; Zoltan Jurek; Beata Ziaja; Robin Santra; N Duane Loh; Thomas Tschentscher; Adrian P Mancuso
Journal:  Sci Rep       Date:  2016-04-25       Impact factor: 4.379

6.  Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges.

Authors:  A Hosseinizadeh; A Dashti; P Schwander; R Fung; A Ourmazd
Journal:  Struct Dyn       Date:  2015-04-30       Impact factor: 2.920

7.  Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL.

Authors:  Miki Nakano; Osamu Miyashita; Slavica Jonic; Changyong Song; Daewoong Nam; Yasumasa Joti; Florence Tama
Journal:  J Synchrotron Radiat       Date:  2017-06-14       Impact factor: 2.616

8.  Structure determination from single molecule X-ray scattering with three photons per image.

Authors:  Benjamin von Ardenne; Martin Mechelke; Helmut Grubmüller
Journal:  Nat Commun       Date:  2018-06-18       Impact factor: 14.919

9.  Single-molecule imaging with longer X-ray laser pulses.

Authors:  Andrew V Martin; Justine K Corso; Carl Caleman; Nicusor Timneanu; Harry M Quiney
Journal:  IUCrJ       Date:  2015-10-21       Impact factor: 4.769

10.  High-resolution structure of viruses from random diffraction snapshots.

Authors:  A Hosseinizadeh; P Schwander; A Dashti; R Fung; R M D'Souza; A Ourmazd
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.