Literature DB >> 22571489

Protein lysine acylation and cysteine succination by intermediates of energy metabolism.

Hening Lin1, Xiaoyang Su, Bin He.   

Abstract

In the past few years, several new protein post-translational modifications that use intermediates in metabolism have been discovered. These include various acyl lysine modifications (formylation, propionylation, butyrylation, crotonylation, malonylation, succinylation, myristoylation) and cysteine succination. Here, we review the discovery and the current understanding of these modifications. Several of these modifications are regulated by the deacylases, sirtuins, which use nicotinamide adenine dinucleotide (NAD), an important metabolic small molecule. Interestingly, several of these modifications in turn regulate the activity of metabolic enzymes. These new modifications reveal interesting connections between metabolism and protein post-translational modifications and raise many questions for future investigations.

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Year:  2012        PMID: 22571489      PMCID: PMC3376250          DOI: 10.1021/cb3001793

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  109 in total

Review 1.  The biochemistry of sirtuins.

Authors:  Anthony A Sauve; Cynthia Wolberger; Vern L Schramm; Jef D Boeke
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

2.  Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.

Authors:  Sung Chan Kim; Robert Sprung; Yue Chen; Yingda Xu; Haydn Ball; Jimin Pei; Tzuling Cheng; Yoonjung Kho; Hao Xiao; Lin Xiao; Nick V Grishin; Michael White; Xiang-Jiao Yang; Yingming Zhao
Journal:  Mol Cell       Date:  2006-08       Impact factor: 17.970

3.  S-(2-Succinyl)cysteine: a novel chemical modification of tissue proteins by a Krebs cycle intermediate.

Authors:  Nathan L Alderson; Yuping Wang; Matthew Blatnik; Norma Frizzell; Michael D Walla; Timothy J Lyons; Nadja Alt; James A Carson; Ryoji Nagai; Suzanne R Thorpe; John W Baynes
Journal:  Arch Biochem Biophys       Date:  2006-03-22       Impact factor: 4.013

4.  Sirtuins deacetylate and activate mammalian acetyl-CoA synthetases.

Authors:  William C Hallows; Susan Lee; John M Denu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-21       Impact factor: 11.205

5.  Histone H4-K16 acetylation controls chromatin structure and protein interactions.

Authors:  Michael Shogren-Knaak; Haruhiko Ishii; Jian-Min Sun; Michael J Pazin; James R Davie; Craig L Peterson
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

6.  N-formylation of lysine in histone proteins as a secondary modification arising from oxidative DNA damage.

Authors:  Tao Jiang; Xinfeng Zhou; Koli Taghizadeh; Min Dong; Peter C Dedon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

7.  Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2.

Authors:  Bjoern Schwer; Jakob Bunkenborg; Regis O Verdin; Jens S Andersen; Eric Verdin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-20       Impact factor: 11.205

8.  SIRT4 inhibits glutamate dehydrogenase and opposes the effects of calorie restriction in pancreatic beta cells.

Authors:  Marcia C Haigis; Raul Mostoslavsky; Kevin M Haigis; Kamau Fahie; Danos C Christodoulou; Andrew J Murphy; David M Valenzuela; George D Yancopoulos; Margaret Karow; Gil Blander; Cynthia Wolberger; Tomas A Prolla; Richard Weindruch; Frederick W Alt; Leonard Guarente
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

9.  Formation of Nepsilon-(succinyl)lysine in vivo: a novel marker for docosahexaenoic acid-derived protein modification.

Authors:  Yoshichika Kawai; Hiroyuki Fujii; Miki Okada; Yoshikazu Tsuchie; Koji Uchida; Toshihiko Osawa
Journal:  J Lipid Res       Date:  2006-04-01       Impact factor: 5.922

10.  Evolutionarily conserved and nonconserved cellular localizations and functions of human SIRT proteins.

Authors:  Eriko Michishita; Jean Y Park; Jenna M Burneskis; J Carl Barrett; Izumi Horikawa
Journal:  Mol Biol Cell       Date:  2005-08-03       Impact factor: 4.138

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  97 in total

1.  Metabolomics-assisted proteomics identifies succinylation and SIRT5 as important regulators of cardiac function.

Authors:  Sushabhan Sadhukhan; Xiaojing Liu; Dongryeol Ryu; Ornella D Nelson; John A Stupinski; Zhi Li; Wei Chen; Sheng Zhang; Robert S Weiss; Jason W Locasale; Johan Auwerx; Hening Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-05       Impact factor: 11.205

2.  Intracellular crotonyl-CoA stimulates transcription through p300-catalyzed histone crotonylation.

Authors:  Benjamin R Sabari; Zhanyun Tang; He Huang; Vladimir Yong-Gonzalez; Henrik Molina; Ha Eun Kong; Lunzhi Dai; Miho Shimada; Justin R Cross; Yingming Zhao; Robert G Roeder; C David Allis
Journal:  Mol Cell       Date:  2015-03-26       Impact factor: 17.970

3.  Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus.

Authors:  Hiroki Okanishi; Kwang Kim; Ryoji Masui; Seiki Kuramitsu
Journal:  Extremophiles       Date:  2016-12-07       Impact factor: 2.395

Review 4.  Using mitochondrial sirtuins as drug targets: disease implications and available compounds.

Authors:  Melanie Gertz; Clemens Steegborn
Journal:  Cell Mol Life Sci       Date:  2016-03-23       Impact factor: 9.261

5.  Activation of the protein deacetylase SIRT6 by long-chain fatty acids and widespread deacylation by mammalian sirtuins.

Authors:  Jessica L Feldman; Josue Baeza; John M Denu
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

Review 6.  Features and regulation of non-enzymatic post-translational modifications.

Authors:  Robert Harmel; Dorothea Fiedler
Journal:  Nat Chem Biol       Date:  2018-02-14       Impact factor: 15.040

7.  Protein Lipidation: Occurrence, Mechanisms, Biological Functions, and Enabling Technologies.

Authors:  Hong Jiang; Xiaoyu Zhang; Xiao Chen; Pornpun Aramsangtienchai; Zhen Tong; Hening Lin
Journal:  Chem Rev       Date:  2018-01-02       Impact factor: 60.622

Review 8.  Chromatin and beyond: the multitasking roles for SIRT6.

Authors:  Sita Kugel; Raul Mostoslavsky
Journal:  Trends Biochem Sci       Date:  2014-01-14       Impact factor: 13.807

9.  Lysine propionylation is a prevalent post-translational modification in Thermus thermophilus.

Authors:  Hiroki Okanishi; Kwang Kim; Ryoji Masui; Seiki Kuramitsu
Journal:  Mol Cell Proteomics       Date:  2014-06-17       Impact factor: 5.911

Review 10.  Redox Signaling by Reactive Electrophiles and Oxidants.

Authors:  Saba Parvez; Marcus J C Long; Jesse R Poganik; Yimon Aye
Journal:  Chem Rev       Date:  2018-08-27       Impact factor: 60.622

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