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Literature DB >> 22565966

Cancer sequencing unravels clonal evolution.

Carlos Caldas.

Abstract

Entities: Disease

Mesh：

Year: 2012 PMID： 22565966 DOI： 10.1038/nbt.2213

Source DB: PubMed Journal: Nat Biotechnol ISSN： 1087-0156 Impact factor: 54.908

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10 in total

1. Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm.

Authors: Yong Hou; Luting Song; Ping Zhu; Bo Zhang; Ye Tao; Xun Xu; Fuqiang Li; Kui Wu; Jie Liang; Di Shao; Hanjie Wu; Xiaofei Ye; Chen Ye; Renhua Wu; Min Jian; Yan Chen; Wei Xie; Ruren Zhang; Lei Chen; Xin Liu; Xiaotian Yao; Hancheng Zheng; Chang Yu; Qibin Li; Zhuolin Gong; Mao Mao; Xu Yang; Lin Yang; Jingxiang Li; Wen Wang; Zuhong Lu; Ning Gu; Goodman Laurie; Lars Bolund; Karsten Kristiansen; Jian Wang; Huanming Yang; Yingrui Li; Xiuqing Zhang; Jun Wang
Journal: Cell Date: 2012-03-02 Impact factor: 41.582

2. Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor.

Authors: Xun Xu; Yong Hou; Xuyang Yin; Li Bao; Aifa Tang; Luting Song; Fuqiang Li; Shirley Tsang; Kui Wu; Hanjie Wu; Weiming He; Liang Zeng; Manjie Xing; Renhua Wu; Hui Jiang; Xiao Liu; Dandan Cao; Guangwu Guo; Xueda Hu; Yaoting Gui; Zesong Li; Wenyue Xie; Xiaojuan Sun; Min Shi; Zhiming Cai; Bin Wang; Meiming Zhong; Jingxiang Li; Zuhong Lu; Ning Gu; Xiuqing Zhang; Laurie Goodman; Lars Bolund; Jian Wang; Huanming Yang; Karsten Kristiansen; Michael Dean; Yingrui Li; Jun Wang
Journal: Cell Date: 2012-03-02 Impact factor: 41.582

3. The patterns and dynamics of genomic instability in metastatic pancreatic cancer.

Authors: Peter J Campbell; Shinichi Yachida; Laura J Mudie; Philip J Stephens; Erin D Pleasance; Lucy A Stebbings; Laura A Morsberger; Calli Latimer; Stuart McLaren; Meng-Lay Lin; David J McBride; Ignacio Varela; Serena A Nik-Zainal; Catherine Leroy; Mingming Jia; Andrew Menzies; Adam P Butler; Jon W Teague; Constance A Griffin; John Burton; Harold Swerdlow; Michael A Quail; Michael R Stratton; Christine Iacobuzio-Donahue; P Andrew Futreal
Journal: Nature Date: 2010-10-28 Impact factor: 49.962

4. The clonal evolution of tumor cell populations.

Authors: P C Nowell
Journal: Science Date: 1976-10-01 Impact factor: 47.728

5. The clonal and mutational evolution spectrum of primary triple-negative breast cancers.

Authors: Sohrab P Shah; Andrew Roth; Rodrigo Goya; Arusha Oloumi; Gavin Ha; Yongjun Zhao; Gulisa Turashvili; Jiarui Ding; Kane Tse; Gholamreza Haffari; Ali Bashashati; Leah M Prentice; Jaswinder Khattra; Angela Burleigh; Damian Yap; Virginie Bernard; Andrew McPherson; Karey Shumansky; Anamaria Crisan; Ryan Giuliany; Alireza Heravi-Moussavi; Jamie Rosner; Daniel Lai; Inanc Birol; Richard Varhol; Angela Tam; Noreen Dhalla; Thomas Zeng; Kevin Ma; Simon K Chan; Malachi Griffith; Annie Moradian; S-W Grace Cheng; Gregg B Morin; Peter Watson; Karen Gelmon; Stephen Chia; Suet-Feung Chin; Christina Curtis; Oscar M Rueda; Paul D Pharoah; Sambasivarao Damaraju; John Mackey; Kelly Hoon; Timothy Harkins; Vasisht Tadigotla; Mahvash Sigaroudinia; Philippe Gascard; Thea Tlsty; Joseph F Costello; Irmtraud M Meyer; Connie J Eaves; Wyeth W Wasserman; Steven Jones; David Huntsman; Martin Hirst; Carlos Caldas; Marco A Marra; Samuel Aparicio
Journal: Nature Date: 2012-04-04 Impact factor: 49.962

6. Tumour evolution inferred by single-cell sequencing.

Authors: Nicholas Navin; Jude Kendall; Jennifer Troge; Peter Andrews; Linda Rodgers; Jeanne McIndoo; Kerry Cook; Asya Stepansky; Dan Levy; Diane Esposito; Lakshmi Muthuswamy; Alex Krasnitz; W Richard McCombie; James Hicks; Michael Wigler
Journal: Nature Date: 2011-03-13 Impact factor: 49.962

7. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.

Authors: Sohrab P Shah; Ryan D Morin; Jaswinder Khattra; Leah Prentice; Trevor Pugh; Angela Burleigh; Allen Delaney; Karen Gelmon; Ryan Guliany; Janine Senz; Christian Steidl; Robert A Holt; Steven Jones; Mark Sun; Gillian Leung; Richard Moore; Tesa Severson; Greg A Taylor; Andrew E Teschendorff; Kane Tse; Gulisa Turashvili; Richard Varhol; René L Warren; Peter Watson; Yongjun Zhao; Carlos Caldas; David Huntsman; Martin Hirst; Marco A Marra; Samuel Aparicio
Journal: Nature Date: 2009-10-08 Impact factor: 49.962

8. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.

Authors: Marco Gerlinger; Andrew J Rowan; Stuart Horswell; James Larkin; David Endesfelder; Eva Gronroos; Pierre Martinez; Nicholas Matthews; Aengus Stewart; Charles Swanton; M Math; Patrick Tarpey; Ignacio Varela; Benjamin Phillimore; Sharmin Begum; Neil Q McDonald; Adam Butler; David Jones; Keiran Raine; Calli Latimer; Claudio R Santos; Mahrokh Nohadani; Aron C Eklund; Bradley Spencer-Dene; Graham Clark; Lisa Pickering; Gordon Stamp; Martin Gore; Zoltan Szallasi; Julian Downward; P Andrew Futreal
Journal: N Engl J Med Date: 2012-03-08 Impact factor: 91.245

9. Genetic variegation of clonal architecture and propagating cells in leukaemia.

Authors: Kristina Anderson; Christoph Lutz; Frederik W van Delft; Caroline M Bateman; Yanping Guo; Susan M Colman; Helena Kempski; Anthony V Moorman; Ian Titley; John Swansbury; Lyndal Kearney; Tariq Enver; Mel Greaves
Journal: Nature Date: 2010-12-15 Impact factor: 49.962

10. Distant metastasis occurs late during the genetic evolution of pancreatic cancer.

Authors: Shinichi Yachida; Siân Jones; Ivana Bozic; Tibor Antal; Rebecca Leary; Baojin Fu; Mihoko Kamiyama; Ralph H Hruban; James R Eshleman; Martin A Nowak; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Christine A Iacobuzio-Donahue
Journal: Nature Date: 2010-10-28 Impact factor: 49.962

10 in total

21 in total

1. Circulating DNA Demonstrates Convergent Evolution and Common Resistance Mechanisms during Treatment of Colorectal Cancer.

Authors: Alain R Thierry; Brice Pastor; Zhi-Qin Jiang; Anastasia D Katsiampoura; Christine Parseghian; Jonathan M Loree; Michael J Overman; Cynthia Sanchez; Safia El Messaoudi; Marc Ychou; Scott Kopetz
Journal: Clin Cancer Res Date: 2017-04-11 Impact factor: 12.531

Cancer sequencing unravels clonal evolution.

1. Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm.

2. Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor.

3. The patterns and dynamics of genomic instability in metastatic pancreatic cancer.

4. The clonal evolution of tumor cell populations.

5. The clonal and mutational evolution spectrum of primary triple-negative breast cancers.

6. Tumour evolution inferred by single-cell sequencing.

7. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.

8. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.

9. Genetic variegation of clonal architecture and propagating cells in leukaemia.

10. Distant metastasis occurs late during the genetic evolution of pancreatic cancer.

1. Circulating DNA Demonstrates Convergent Evolution and Common Resistance Mechanisms during Treatment of Colorectal Cancer.

Review 2. Bone specific immunity and its impact on metastasis.

3. Perspective: Flicking with flow: Can microfluidics revolutionize the cancer research?

4. Single-cell sequencing in its prime.

5. Profiling HBV integrations in hepatocellular carcinoma.

Review 6. Cancer Evolution-Development: experience of hepatitis B virus-induced hepatocarcinogenesis.

7. Identification of immunotherapeutic targets by genomic profiling of rectal NET metastases.

Review 8. Bioinformatic approaches to augment study of epithelial-to-mesenchymal transition in lung cancer.

Review 9. A new genome-driven integrated classification of breast cancer and its implications.

10. A simple strategy for reducing false negatives in calling variants from single-cell sequencing data.