Literature DB >> 22562360

Genomic impact, chromosomal distribution and transcriptional regulation of HERV elements.

Heui-Soo Kim1.   

Abstract

Human endogenous retroviruses (HERVs) mediate structural variation and genomic instability based on their multiple copy number, inherent ability to mobilize via reverse transcriptase, and high sequence similarity. Moreover, they undergo multiple amplification and retrotransposition events, resulting in the widespread distribution of complete or partial retroviral sequences throughout the primate genome. As such, HERV elements have played important biological roles in genome evolution, and their long terminal repeat (LTR) elements contain numerous regulatory sequences, including effective promoters, enhancers, polyadenylation signals, and transcription factorbinding sites. Lastly, HERV elements are capable of influencing the expression of neighboring genes, a process that also contributed to primate evolution.

Entities:  

Mesh:

Year:  2012        PMID: 22562360      PMCID: PMC3887755          DOI: 10.1007/s10059-012-0037-y

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  49 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter.

Authors:  Josette-Renée Landry; Arefeh Rouhi; Patrik Medstrand; Dixie L Mager
Journal:  Mol Biol Evol       Date:  2002-11       Impact factor: 16.240

3.  Characterization of the intragenomic spread of the human endogenous retrovirus family HERV-W.

Authors:  Javier Costas
Journal:  Mol Biol Evol       Date:  2002-04       Impact factor: 16.240

4.  Characterization of the three HERV-H proviruses with an open envelope reading frame encompassing the immunosuppressive domain and evolutionary history in primates.

Authors:  N de Parseval; J Casella; L Gressin; T Heidmann
Journal:  Virology       Date:  2001-01-20       Impact factor: 3.616

5.  Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: three master genes were active simultaneously during branching of hominoid lineages.

Authors:  Anton Buzdin; Svetlana Ustyugova; Konstantin Khodosevich; Ilgar Mamedov; Yuri Lebedev; Gerhard Hunsmann; Eugene Sverdlov
Journal:  Genomics       Date:  2003-02       Impact factor: 5.736

6.  Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans.

Authors:  P Medstrand; J R Landry; D L Mager
Journal:  J Biol Chem       Date:  2000-10-27       Impact factor: 5.157

7.  Sequence and phylogeny of HERV-W pol fragments.

Authors:  H S Kim
Journal:  AIDS Res Hum Retroviruses       Date:  2001-11-20       Impact factor: 2.205

Review 8.  Mechanisms in tissue-specific regulation of estrogen biosynthesis in humans.

Authors:  Amrita Kamat; Margaret M Hinshelwood; Barbara A Murry; Carole R Mendelson
Journal:  Trends Endocrinol Metab       Date:  2002-04       Impact factor: 12.015

9.  Mutation of CpGs in the murine stem cell virus retroviral vector long terminal repeat represses silencing in embryonic stem cells.

Authors:  C Scott Swindle; Hyung G Kim; Christopher A Klug
Journal:  J Biol Chem       Date:  2003-10-14       Impact factor: 5.157

10.  Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene.

Authors:  Josette-Renée Landry; Dixie L Mager
Journal:  J Virol       Date:  2003-07       Impact factor: 5.103

View more
  18 in total

1.  RNA element discovery from germ cell to blastocyst.

Authors:  Molly S Estill; Russ Hauser; Stephen A Krawetz
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

Review 2.  Advances in the Chromosome-Centric Human Proteome Project: looking to the future.

Authors:  Young-Ki Paik; Gilbert S Omenn; William S Hancock; Lydie Lane; Christopher M Overall
Journal:  Expert Rev Proteomics       Date:  2017-11-10       Impact factor: 3.940

Review 3.  Molecular functions of human endogenous retroviruses in health and disease.

Authors:  Maria Suntsova; Andrew Garazha; Alena Ivanova; Dmitry Kaminsky; Alex Zhavoronkov; Anton Buzdin
Journal:  Cell Mol Life Sci       Date:  2015-06-18       Impact factor: 9.261

Review 4.  Human endogenous retrovirus regulates the initiation and progression of cancers (Review).

Authors:  Srishti Sahu; Bharat Singh; Ambak Kumar Rai
Journal:  Mol Clin Oncol       Date:  2022-08-03

Review 5.  Inheritable epigenetic response towards foreign DNA entry by mammalian host cells: a guardian of genomic stability.

Authors:  Walter Doerfler; Stefanie Weber; Anja Naumann
Journal:  Epigenetics       Date:  2018-12-12       Impact factor: 4.528

6.  Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression.

Authors:  Ina P O'Carroll; Lixin Fan; Tomáš Kroupa; Erin K McShane; Christophe Theodore; Elizabeth A Yates; Benjamin Kondrup; Jienyu Ding; Tyler S Martin; Alan Rein; Yun-Xing Wang
Journal:  J Mol Biol       Date:  2020-11-14       Impact factor: 5.469

7.  New bioinformatic tool for quick identification of functionally relevant endogenous retroviral inserts in human genome.

Authors:  Andrew Garazha; Alena Ivanova; Maria Suntsova; Galina Malakhova; Sergey Roumiantsev; Alex Zhavoronkov; Anton Buzdin
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

8.  Transposable Elements: No More 'Junk DNA'.

Authors:  Yun-Ji Kim; Jungnam Lee; Kyudong Han
Journal:  Genomics Inform       Date:  2012-12-31

9.  Pathological and evolutionary implications of retroviruses as mobile genetic elements.

Authors:  Madeline Hayes; Mackenzie Whitesell; Mark A Brown
Journal:  Genes (Basel)       Date:  2013-10-24       Impact factor: 4.096

10.  Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes.

Authors:  Nicole Grandi; Marta Cadeddu; Jonas Blomberg; Enzo Tramontano
Journal:  Retrovirology       Date:  2016-09-09       Impact factor: 4.602

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.