Literature DB >> 22553599

Bioinformatics-led design of single-chain antibody molecules targeting DNA sequences for retinoblastoma.

Guo-Gang Shang1, Jian-Hua Zhang, Yong-Gang Lü, Jun Yun.   

Abstract

AIM: To analyze the relationship between the structure and function of single-chain Fv antibody (scFv) with bioinformatics methods, so as to provide theoretical basis for retinoblastoma targeted therapy.
METHODS: Single-chain antibodies are reconstructed for cancer-targeted therapy to provide good penetration into tumor tissue and to improve their pharmacokinetics in vivo, offering a clinically valuable application. The relationship needs to be analyzed that there may be some variations between the structure and function of the fusion proteins, and the relationship between the structure and function of protein molecules was obtained through analyzing relevant literature at home and abroad as well as modeling analysis.
RESULTS: Through our analysis of the interaction region between the antibody and the antigen, and of the binding sites for molecular conformation, it is clear that existing antibodies need to be modified at the DNA sequence level, enhancing the biological activity of the antibodies. Based on the view that bio-molecular computer models are closely integrated with biological experiments, a bio-molecular structure-activity relationship model can be established in terms of molecular conformation, physical and chemical properties and the biological activity of single-chain antibodies. Two enlightenments are obtained from our analysis. On the one hand, the structure-activity relationship is clear for new immune molecules at the gene expression level. On the other hand, a single-chain antibody molecule can be designed and optimized for the cancer-oriented treatment.
CONCLUSION: In this article, we provide the theoretical and experimental basis for the development of single-chain antibodies appropriate for retinoblastoma therapy.

Entities:  

Keywords:  bioinformatics; retinoblastoma; single-chain antibody; structure-activity relationship

Year:  2011        PMID: 22553599      PMCID: PMC3340683          DOI: 10.3980/j.issn.2222-3959.2011.01.02

Source DB:  PubMed          Journal:  Int J Ophthalmol        ISSN: 2222-3959            Impact factor:   1.779


  47 in total

Review 1.  Predicting protein druggability.

Authors:  Philip J Hajduk; Jeffrey R Huth; Christin Tse
Journal:  Drug Discov Today       Date:  2005-12       Impact factor: 7.851

2.  Binding activity difference of anti-CD20 scFv-Fc fusion protein derived from variable domain exchange.

Authors:  Shu Sheng Geng; Jiannan Feng; Yan Li; Yingxun Sun; Xin Gu; Ying Huang; Yugang Wang; Xianjiang Kang; Hong Chang; Beifen Shen
Journal:  Cell Mol Immunol       Date:  2006-12       Impact factor: 11.530

3.  Humanization of high affinity anti-HBs antibody by using human consensus sequence and modification of selected minimal positional template and packing residues.

Authors:  Ashutosh Tiwari; Navin Khanna; Subrat K Acharya; Subrata Sinha
Journal:  Vaccine       Date:  2009-02-13       Impact factor: 3.641

4.  Mechanism of ligand-induced folding of a natively unfolded helixless variant of rabbit I-BABP.

Authors:  Anita M Rea; Victoria Thurston; Mark S Searle
Journal:  Biochemistry       Date:  2009-08-11       Impact factor: 3.162

5.  Interactions between anti-ErbB2 antibody A21 and the ErbB2 extracellular domain provide a basis for improving A21 affinity.

Authors:  Liang Chang; Changhai Zhou; Man Xu; Jing Liu
Journal:  J Comput Aided Mol Des       Date:  2009-12-12       Impact factor: 3.686

6.  Expression in Pichia pastoris and purification of a membrane-acting immunotoxin based on a synthetic gene coding for the Bacillus thuringiensis Cyt2Aa1 toxin.

Authors:  Cemal Gurkan; David J Ellar
Journal:  Protein Expr Purif       Date:  2003-05       Impact factor: 1.650

7.  Improving GPX activity of selenium-containing human single-chain Fv antibody by site-directed mutation based on the structural analysis.

Authors:  Junjie Xu; Jian Song; Fei Yan; Huiying Chu; Jixun Luo; Yongshan Zhao; Xu Cheng; Guimin Luo; Qingchuan Zheng; Jingyan Wei
Journal:  J Mol Recognit       Date:  2009 Jul-Aug       Impact factor: 2.137

8.  Inhibition of melanoma growth by targeting of antigen to dendritic cells via an anti-DEC-205 single-chain fragment variable molecule.

Authors:  Theron S Johnson; Karsten Mahnke; Volker Storn; Kurt Schönfeld; Sabine Ring; Dirk M Nettelbeck; Hidde J Haisma; Fabrice Le Gall; Roland E Kontermann; Alexander H Enk
Journal:  Clin Cancer Res       Date:  2008-12-15       Impact factor: 12.531

9.  Direct immobilization of functional single-chain variable fragment antibodies (scFvs) onto a polystyrene plate by genetic fusion of a polystyrene-binding peptide (PS-tag).

Authors:  Yoichi Kumada; Kyoko Hamasaki; Yuki Shiritani; Aya Nakagawa; Daisuke Kuroki; Takuhito Ohse; Dong Hwan Choi; Yoshio Katakura; Michimasa Kishimoto
Journal:  Anal Bioanal Chem       Date:  2009-08-13       Impact factor: 4.142

10.  [Construction and screening of phage antibody libraries against epidermal growth factor receptor and soluble expression of single chain Fv].

Authors:  Wei-Jin Sheng; Qing-Fang Miao; Yong-Su Zhen
Journal:  Yao Xue Xue Bao       Date:  2009-06
View more
  2 in total

1.  Effect of VEGF-targeted antisense gene therapy on retinoblastoma cell line SO-RB50 in vitro and in vivo.

Authors:  Guo-Hong Xin; Xin-Han Zhao; Dong Liu; Qiang Gong; Lei Hou; Jing-Yun Li; Bo-Rong Pan; Xu Li; Ya-Jie Cheng
Journal:  Int J Ophthalmol       Date:  2012-08-18       Impact factor: 1.779

2.  Anti-angiogenic effect of quercetin and its 8-methyl pentamethyl ether derivative in human microvascular endothelial cells.

Authors:  Gabriella Lupo; Maria Teresa Cambria; Melania Olivieri; Concetta Rocco; Nunzia Caporarello; Anna Longo; Guido Zanghì; Mario Salmeri; Mario C Foti; Carmelina Daniela Anfuso
Journal:  J Cell Mol Med       Date:  2019-08-01       Impact factor: 5.310

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.