Literature DB >> 22551415

A robust bayesian random effects model for nonlinear calibration problems.

Y Fong1, J Wakefield, S De Rosa, N Frahm.   

Abstract

In the context of a bioassay or an immunoassay, calibration means fitting a curve, usually nonlinear, through the observations collected on a set of samples containing known concentrations of a target substance, and then using the fitted curve and observations collected on samples of interest to predict the concentrations of the target substance in these samples. Recent technological advances have greatly improved our ability to quantify minute amounts of substance from a tiny volume of biological sample. This has in turn led to a need to improve statistical methods for calibration. In this article, we focus on developing calibration methods robust to dependent outliers. We introduce a novel normal mixture model with dependent error terms to model the experimental noise. In addition, we propose a reparameterization of the five parameter logistic nonlinear regression model that allows us to better incorporate prior information. We examine the performance of our methods with simulation studies and show that they lead to a substantial increase in performance measured in terms of mean squared error of estimation and a measure of the average prediction accuracy. A real data example from the HIV Vaccine Trials Network Laboratory is used to illustrate the methods.
© 2012, The International Biometric Society.

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Year:  2012        PMID: 22551415      PMCID: PMC3897249          DOI: 10.1111/j.1541-0420.2012.01762.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  17 in total

1.  Statistical analysis of radioligand assay data.

Authors:  D Rodbard; G R Frazier
Journal:  Methods Enzymol       Date:  1975       Impact factor: 1.600

2.  Immunoassay of endogenous plasma insulin in man.

Authors:  R S YALOW; S A BERSON
Journal:  J Clin Invest       Date:  1960-07       Impact factor: 14.808

3.  Bayesian analysis of serial dilution assays.

Authors:  Andrew Gelman; Ginger L Chew; Michael Shnaidman
Journal:  Biometrics       Date:  2004-06       Impact factor: 2.571

4.  A generalization of the probit and logit methods for dose response curves.

Authors:  R L Prentice
Journal:  Biometrics       Date:  1976-12       Impact factor: 2.571

5.  The five-parameter logistic: a characterization and comparison with the four-parameter logistic.

Authors:  Paul G Gottschalk; John R Dunn
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7.  The effect of variance function estimation on nonlinear calibration inference in immunoassay data.

Authors:  B A Belanger; M Davidian; D M Giltinan
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8.  Enzyme-linked immunosorbent assay (ELISA). Quantitative assay of immunoglobulin G.

Authors:  E Engvall; P Perlmann
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9.  An algorithm for robust non-linear analysis of radioimmunoassays and other bioassays.

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10.  The application of robust calibration to radioimmunoassay.

Authors:  J J Tiede; M Pagano
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  9 in total

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