Literature DB >> 22550245

The cancer epigenome: its origins, contributions to tumorigenesis, and translational implications.

Stephen B Baylin1.   

Abstract

Epigenetic abnormalities in lung and other cancers continue to be defined at a rapid pace. We are coming to appreciate that cancers have an "epigenetic landscape" wherein genes vulnerable to abnormalities, such as promoter DNA hypermethylation and associated gene silencing, tend to reside in defined nuclear positions and chromosome domains and relationships to chromatin regulation, which facilitates states of stem cell renewal. These same genes and domains are also vulnerable to epigenetic abnormalities induced by factors to which cells are exposed during cancer risk states, such as chronic inflammation. We can use all of this basic information for translational purposes in terms of deriving biomarkers for cancer risk states and detection and therapeutic strategies.

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Year:  2012        PMID: 22550245      PMCID: PMC3359110          DOI: 10.1513/pats.201201-001MS

Source DB:  PubMed          Journal:  Proc Am Thorac Soc        ISSN: 1546-3222


  24 in total

Review 1.  Gene silencing in cancer in association with promoter hypermethylation.

Authors:  James G Herman; Stephen B Baylin
Journal:  N Engl J Med       Date:  2003-11-20       Impact factor: 91.245

2.  Cancer: an inflammatory link.

Authors:  Fran Balkwill; Lisa M Coussens
Journal:  Nature       Date:  2004-09-23       Impact factor: 49.962

3.  A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

Review 4.  The epigenetic progenitor origin of human cancer.

Authors:  Andrew P Feinberg; Rolf Ohlsson; Steven Henikoff
Journal:  Nat Rev Genet       Date:  2006-01       Impact factor: 53.242

5.  Cancer is a functional repair tissue.

Authors:  Xiaolong Meng; Neil H Riordan
Journal:  Med Hypotheses       Date:  2005-11-15       Impact factor: 1.538

Review 6.  FDA drug approval summary: azacitidine (5-azacytidine, Vidaza) for injectable suspension.

Authors:  Edvardas Kaminskas; Ann T Farrell; Yong-Cheng Wang; Rajeshwari Sridhara; Richard Pazdur
Journal:  Oncologist       Date:  2005-03

7.  Randomized controlled trial of azacitidine in patients with the myelodysplastic syndrome: a study of the cancer and leukemia group B.

Authors:  Lewis R Silverman; Erin P Demakos; Bercedis L Peterson; Alice B Kornblith; Jimmie C Holland; Rosalie Odchimar-Reissig; Richard M Stone; Douglas Nelson; Bayard L Powell; Carlos M DeCastro; John Ellerton; Richard A Larson; Charles A Schiffer; James F Holland
Journal:  J Clin Oncol       Date:  2002-05-15       Impact factor: 44.544

Review 8.  Epigenetic gene silencing in cancer - a mechanism for early oncogenic pathway addiction?

Authors:  Stephen B Baylin; Joyce E Ohm
Journal:  Nat Rev Cancer       Date:  2006-02       Impact factor: 60.716

Review 9.  Inflammation and cancer.

Authors:  Lisa M Coussens; Zena Werb
Journal:  Nature       Date:  2002 Dec 19-26       Impact factor: 49.962

10.  Combination epigenetic therapy has efficacy in patients with refractory advanced non-small cell lung cancer.

Authors:  Rosalyn A Juergens; John Wrangle; Frank P Vendetti; Sara C Murphy; Ming Zhao; Barbara Coleman; Rosa Sebree; Kristen Rodgers; Craig M Hooker; Noreli Franco; Beverly Lee; Salina Tsai; Igor Espinoza Delgado; Michelle A Rudek; Steven A Belinsky; James G Herman; Stephen B Baylin; Malcolm V Brock; Charles M Rudin
Journal:  Cancer Discov       Date:  2011-11-09       Impact factor: 39.397

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  16 in total

1.  DLEC1, a 3p tumor suppressor, represses NF-κB signaling and is methylated in prostate cancer.

Authors:  Lian Zhang; Qian Zhang; LiLi Li; Zhaohui Wang; Jianming Ying; Yu Fan; Qun He; Tianjing Lv; Wenke Han; Jun Li; Yang Yang; Ben Xu; Lu Wang; Qianling Liu; Yinghao Sun; Yinglu Guo; Qian Tao; Jie Jin
Journal:  J Mol Med (Berl)       Date:  2015-02-05       Impact factor: 4.599

Review 2.  Evaluating the mechanistic evidence and key data gaps in assessing the potential carcinogenicity of carbon nanotubes and nanofibers in humans.

Authors:  Eileen D Kuempel; Marie-Claude Jaurand; Peter Møller; Yasuo Morimoto; Norihiro Kobayashi; Kent E Pinkerton; Linda M Sargent; Roel C H Vermeulen; Bice Fubini; Agnes B Kane
Journal:  Crit Rev Toxicol       Date:  2016-08-18       Impact factor: 5.635

Review 3.  Methylation analyses in liquid biopsy.

Authors:  Delphine Lissa; Ana I Robles
Journal:  Transl Lung Cancer Res       Date:  2016-10

4.  Down-regulation of PAX6 by promoter methylation is associated with poor prognosis in non small cell lung cancer.

Authors:  Xiangxian Zhang; Xiao Yang; Junling Wang; Tiansong Liang; Yue Gu; Daoke Yang
Journal:  Int J Clin Exp Pathol       Date:  2015-09-01

5.  Chronic Cigarette Smoke-Induced Epigenomic Changes Precede Sensitization of Bronchial Epithelial Cells to Single-Step Transformation by KRAS Mutations.

Authors:  Michelle Vaz; Stephen Y Hwang; Ioannis Kagiampakis; Jillian Phallen; Ashwini Patil; Heather M O'Hagan; Lauren Murphy; Cynthia A Zahnow; Edward Gabrielson; Victor E Velculescu; Hariharan P Easwaran; Stephen B Baylin
Journal:  Cancer Cell       Date:  2017-09-11       Impact factor: 31.743

Review 6.  DNA methylation data analysis and its application to cancer research.

Authors:  Xiaotu Ma; Yi-Wei Wang; Michael Q Zhang; Adi F Gazdar
Journal:  Epigenomics       Date:  2013-06       Impact factor: 4.778

7.  Targeted DNA methylation analysis by next-generation sequencing.

Authors:  Dustin R Masser; David R Stanford; Willard M Freeman
Journal:  J Vis Exp       Date:  2015-02-24       Impact factor: 1.355

Review 8.  The emerging role of epigenetic therapeutics in immuno-oncology.

Authors:  Michael J Topper; Michelle Vaz; Kristen A Marrone; Julie R Brahmer; Stephen B Baylin
Journal:  Nat Rev Clin Oncol       Date:  2019-09-23       Impact factor: 66.675

9.  Frequent MYC coamplification and DNA hypomethylation of multiple genes on 8q in 8p11-p12-amplified breast carcinomas.

Authors:  T Z Parris; A Kovács; S Hajizadeh; S Nemes; M Semaan; M Levin; P Karlsson; K Helou
Journal:  Oncogenesis       Date:  2014-03-24       Impact factor: 7.485

10.  Glycated hemoglobin and all-cause and cause-specific mortality in Singaporean Chinese without diagnosed diabetes: the Singapore Chinese Health Study.

Authors:  Michael P Bancks; Andrew O Odegaard; James S Pankow; Woon-Puay Koh; Jian-Min Yuan; Myron D Gross; Mark A Pereira
Journal:  Diabetes Care       Date:  2014-09-11       Impact factor: 19.112

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