Literature DB >> 22545237

What Nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals.

Etienne G J Danchin1.   

Abstract

Horizontal gene transfer (HGT), the transmission of a gene from one species to another by means other than direct vertical descent from a common ancestor, has been recognized as an important phenomenon in the evolutionary biology of prokaryotes. In eukaryotes, in contrast, the importance of HGT has long been overlooked and its evolutionary significance has been considered to be mostly negligible. However, a series of genome analyses has now shown that HGT not only do probably occur at a higher frequency than originally thought in eukaryotes but recent examples have also shown that they have been subject to natural selection, thus suggesting a significant role in the evolutionary history of the receiver species. Surprisingly, these examples are not from protists in which integration and fixation of foreign genes intuitively appear relatively straightforward, because there is no clear distinction between the germline and the somatic genome. Instead, these examples are from nematodes, multicellular animals that do have distinct cells and tissues and do possess a separate germline. Hence, the mechanisms of gene transfer appears in this case much more complicated. In this commentary, I will further discuss two recent publications that describe HGT in nematodes, one that highlights the importance of HGT in the emergence of plant parasitism and another one that probably represents the most convincing example of a potential transfer between two different metazoan animals, an insect and a nematode.

Entities:  

Year:  2011        PMID: 22545237      PMCID: PMC3337135          DOI: 10.4161/mge.18776

Source DB:  PubMed          Journal:  Mob Genet Elements        ISSN: 2159-2543


  23 in total

1.  Microbial genes in the human genome: lateral transfer or gene loss?

Authors:  S L Salzberg; O White; J Peterson; J A Eisen
Journal:  Science       Date:  2001-05-17       Impact factor: 47.728

2.  Insect diapause-specific peptide from the leaf beetle has consensus with a putative iridovirus peptide.

Authors:  Hiromasa Tanaka; Kenji Sato; Yoshimi Saito; Tetsuro Yamashita; Masanobu Agoh; Junji Okunishi; Eiichi Tachikawa; Koichi Suzuki
Journal:  Peptides       Date:  2003-09       Impact factor: 3.750

3.  Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes.

Authors:  Etienne G J Danchin; Marie-Noëlle Rosso; Paulo Vieira; Janice de Almeida-Engler; Pedro M Coutinho; Bernard Henrissat; Pierre Abad
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

4.  The post-Darwinist rhizome of life.

Authors:  Didier Raoult
Journal:  Lancet       Date:  2010-01-09       Impact factor: 79.321

5.  Massive horizontal gene transfer in bdelloid rotifers.

Authors:  Eugene A Gladyshev; Matthew Meselson; Irina R Arkhipova
Journal:  Science       Date:  2008-05-30       Impact factor: 47.728

6.  The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism.

Authors:  Christoph Dieterich; Sandra W Clifton; Lisa N Schuster; Asif Chinwalla; Kimberly Delehaunty; Iris Dinkelacker; Lucinda Fulton; Robert Fulton; Jennifer Godfrey; Pat Minx; Makedonka Mitreva; Waltraud Roeseler; Huiyu Tian; Hanh Witte; Shiaw-Pyng Yang; Richard K Wilson; Ralf J Sommer
Journal:  Nat Genet       Date:  2008-09-21       Impact factor: 38.330

7.  Endogenous cellulases in animals: isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes.

Authors:  G Smant; J P Stokkermans; Y Yan; J M de Boer; T J Baum; X Wang; R S Hussey; F J Gommers; B Henrissat; E L Davis; J Helder; A Schots; J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

8.  Lateral transfer of genes from fungi underlies carotenoid production in aphids.

Authors:  Nancy A Moran; Tyler Jarvik
Journal:  Science       Date:  2010-04-30       Impact factor: 47.728

9.  Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects.

Authors:  Christian Rödelsperger; Ralf J Sommer
Journal:  BMC Evol Biol       Date:  2011-08-15       Impact factor: 3.260

10.  Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.

Authors:  Elizabeth H Scholl; Jeffrey L Thorne; James P McCarter; David Mck Bird
Journal:  Genome Biol       Date:  2003-05-19       Impact factor: 13.583

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  11 in total

Review 1.  Horizontal gene transfer in the acquisition of novel traits by metazoans.

Authors:  Luis Boto
Journal:  Proc Biol Sci       Date:  2014-01-08       Impact factor: 5.349

2.  The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer.

Authors:  Yannick Pauchet; David G Heckel
Journal:  Proc Biol Sci       Date:  2013-05-22       Impact factor: 5.349

Review 3.  Signatures of adaptation to plant parasitism in nematode genomes.

Authors:  David McK Bird; John T Jones; Charles H Opperman; Taisei Kikuchi; Etienne G J Danchin
Journal:  Parasitology       Date:  2015-02       Impact factor: 3.234

4.  The evolutionary fate of the horizontally transferred agrobacterial mikimopine synthase gene in the genera Nicotiana and Linaria.

Authors:  Viera Kovacova; Jitka Zluvova; Bohuslav Janousek; Martina Talianova; Boris Vyskot
Journal:  PLoS One       Date:  2014-11-24       Impact factor: 3.240

5.  Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird's-Nest Fern.

Authors:  Guan-Long Wu; Tzu-Hao Kuo; Tung-Tsuan Tsay; Isheng J Tsai; Peichen J Chen
Journal:  PLoS One       Date:  2016-07-08       Impact factor: 3.240

Review 6.  Lateral gene transfers have polished animal genomes: lessons from nematodes.

Authors:  Etienne G J Danchin; Marie-Noëlle Rosso
Journal:  Front Cell Infect Microbiol       Date:  2012-03-06       Impact factor: 5.293

7.  Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.

Authors:  Julien Paganini; Amandine Campan-Fournier; Martine Da Rocha; Philippe Gouret; Pierre Pontarotti; Eric Wajnberg; Pierre Abad; Etienne G J Danchin
Journal:  PLoS One       Date:  2012-11-30       Impact factor: 3.240

8.  Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle.

Authors:  Roy Kirsch; Natalie Wielsch; Heiko Vogel; Aleš Svatoš; David G Heckel; Yannick Pauchet
Journal:  BMC Genomics       Date:  2012-11-01       Impact factor: 3.969

9.  Horizontal transfer and the evolution of host-pathogen interactions.

Authors:  Elena de la Casa-Esperón
Journal:  Int J Evol Biol       Date:  2012-11-26

10.  Exploration of cotton leaf curl virus resistance genes and their screening in Gossypium arboreum by targeting resistance gene analogues.

Authors:  Rakhshanda Mushtaq; Khurram Shahzad; Shahid Mansoor; Zahid Hussain Shah; Hameed Alsamadany; Tahir Mujtaba; Yahya Al-Zahrani; Hind A S Alzahrani; Zaheer Ahmed; Aftab Bashir
Journal:  AoB Plants       Date:  2018-10-16       Impact factor: 3.276

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