Literature DB >> 22543368

easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data.

Maria Anna Rapsomaniki1, Panagiotis Kotsantis, Ioanna-Eleni Symeonidou, Nickolaos-Nikiforos Giakoumakis, Stavros Taraviras, Zoi Lygerou.   

Abstract

SUMMARY: We present easyFRAP, a versatile tool that assists quantitative and qualitative analysis of fluorescence recovery after photobleaching (FRAP) data. The user can handle simultaneously large data sets of raw data, visualize fluorescence recovery curves, exclude low quality data, perform data normalization, extract quantitative parameters, perform batch analysis and save the resulting data and figures for further use. Our tool is implemented as a single-screen Graphical User Interface (GUI) and is highly interactive, as it permits parameterization and visual data quality assessment at various points during the analysis. AVAILABILITY: easyFRAP is free software, available under the General Public License (GPL). Executable and source files, supplementary material and sample data sets can be downloaded at: ccl.med.upatras.gr/easyfrap.html.

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Year:  2012        PMID: 22543368     DOI: 10.1093/bioinformatics/bts241

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  72 in total

1.  Multi-step loading of human minichromosome maintenance proteins in live human cells.

Authors:  Ioanna-Eleni Symeonidou; Panagiotis Kotsantis; Vassilis Roukos; Maria-Anna Rapsomaniki; Hernán E Grecco; Philippe Bastiaens; Stavros Taraviras; Zoi Lygerou
Journal:  J Biol Chem       Date:  2013-10-24       Impact factor: 5.157

2.  Poc1A and Poc1B act together in human cells to ensure centriole integrity.

Authors:  Magali Venoux; Xavier Tait; Rebecca S Hames; Kees R Straatman; Hugh R Woodland; Andrew M Fry
Journal:  J Cell Sci       Date:  2012-09-26       Impact factor: 5.285

3.  RanGTP and importin β regulate meiosis I spindle assembly and function in mouse oocytes.

Authors:  David Drutovic; Xing Duan; Rong Li; Petr Kalab; Petr Solc
Journal:  EMBO J       Date:  2019-10-16       Impact factor: 11.598

4.  Lytic immune synapse function requires filamentous actin deconstruction by Coronin 1A.

Authors:  Emily M Mace; Jordan S Orange
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-23       Impact factor: 11.205

5.  Luminal signalling links cell communication to tissue architecture during organogenesis.

Authors:  Sevi Durdu; Murat Iskar; Celine Revenu; Nicole Schieber; Andreas Kunze; Peer Bork; Yannick Schwab; Darren Gilmour
Journal:  Nature       Date:  2014-10-22       Impact factor: 49.962

6.  A novel approach for studying histone H1 function in vivo.

Authors:  Giorgia Siriaco; Renate Deuring; Gina D Mawla; John W Tamkun
Journal:  Genetics       Date:  2015-03-23       Impact factor: 4.562

7.  Mechanistic determinants of MBNL activity.

Authors:  Łukasz J Sznajder; Michał Michalak; Katarzyna Taylor; Piotr Cywoniuk; Michał Kabza; Agnieszka Wojtkowiak-Szlachcic; Magdalena Matłoka; Patryk Konieczny; Krzysztof Sobczak
Journal:  Nucleic Acids Res       Date:  2016-10-12       Impact factor: 16.971

8.  A murine retrovirus co-Opts YB-1, a translational regulator and stress granule-associated protein, to facilitate virus assembly.

Authors:  Darrin V Bann; Andrea R Beyer; Leslie J Parent
Journal:  J Virol       Date:  2014-02-05       Impact factor: 5.103

9.  Sequence-Independent Self-Assembly of Germ Granule mRNAs into Homotypic Clusters.

Authors:  Tatjana Trcek; Tyler E Douglas; Markus Grosch; Yandong Yin; Whitby V I Eagle; Elizabeth R Gavis; Hari Shroff; Eli Rothenberg; Ruth Lehmann
Journal:  Mol Cell       Date:  2020-05-27       Impact factor: 17.970

10.  Prion-like proteins sequester and suppress the toxicity of huntingtin exon 1.

Authors:  Can Kayatekin; Kent E S Matlack; William R Hesse; Yinghua Guan; Sohini Chakrabortee; Jenny Russ; Erich E Wanker; Jagesh V Shah; Susan Lindquist
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

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