Literature DB >> 22540022

Modulation of chromatin access during adipocyte differentiation.

Susanne Mandrup1, Gordon L Hager.   

Abstract

Cellular development requires reprogramming of the genome to modulate the gene program of the undifferentiated cell and allow expression of the gene program unique to differentiated cells. A number of key transcription factors involved in this reprogramming of preadipocytes to adipocytes have been identified; however, it is not until recently that we have begun to understand how these factors act at a genome-wide scale. In a recent publication we have mapped the genome-wide changes in chromatin structure during differentiation of 3T3-L1 preadipocytes and shown that a major reorganization of the chromatin landscape occurs within few hours following the addition of the adipogenic cocktail. In addition, we have mapped the genome-wide profiles of several of the early adipogenic transcription factors and shown that they act in a highly cooperative manner to drive this dramatic remodeling process.

Keywords:  C/EBPbeta; ChIP-seq; DHS-seq; DNase I hypersensitive sites; adipocyte differentiation; chromatin structure; hotspot

Mesh:

Substances:

Year:  2012        PMID: 22540022      PMCID: PMC3337165          DOI: 10.4161/nucl.18928

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  10 in total

1.  Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.

Authors:  Rasmus Siersbæk; Ronni Nielsen; Sam John; Myong-Hee Sung; Songjoon Baek; Anne Loft; Gordon L Hager; Susanne Mandrup
Journal:  EMBO J       Date:  2011-03-22       Impact factor: 11.598

2.  Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).

Authors:  Gregory E Crawford; Ingeborg E Holt; James Whittle; Bryn D Webb; Denise Tai; Sean Davis; Elliott H Margulies; YiDong Chen; John A Bernat; David Ginsburg; Daixing Zhou; Shujun Luo; Thomas J Vasicek; Mark J Daly; Tyra G Wolfsberg; Francis S Collins
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

3.  FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Authors:  Mathieu Lupien; Jérôme Eeckhoute; Clifford A Meyer; Qianben Wang; Yong Zhang; Wei Li; Jason S Carroll; X Shirley Liu; Myles Brown
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

4.  Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis.

Authors:  Ronni Nielsen; Thomas Askov Pedersen; Dik Hagenbeek; Panagiotis Moulos; Rasmus Siersbaek; Eva Megens; Sergei Denissov; Michael Børgesen; Kees-Jan Francoijs; Susanne Mandrup; Hendrik G Stunnenberg
Journal:  Genes Dev       Date:  2008-11-01       Impact factor: 11.361

5.  Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.

Authors:  Simon C Biddie; Sam John; Pete J Sabo; Robert E Thurman; Thomas A Johnson; R Louis Schiltz; Tina B Miranda; Myong-Hee Sung; Saskia Trump; Stafford L Lightman; Charles Vinson; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2011-07-08       Impact factor: 17.970

6.  Interaction of the glucocorticoid receptor with the chromatin landscape.

Authors:  Sam John; Peter J Sabo; Thomas A Johnson; Myong-Hee Sung; Simon C Biddie; Stafford L Lightman; Ty C Voss; Sean R Davis; Paul S Meltzer; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

7.  Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.

Authors:  Gordon Robertson; Martin Hirst; Matthew Bainbridge; Misha Bilenky; Yongjun Zhao; Thomas Zeng; Ghia Euskirchen; Bridget Bernier; Richard Varhol; Allen Delaney; Nina Thiessen; Obi L Griffith; Ann He; Marco Marra; Michael Snyder; Steven Jones
Journal:  Nat Methods       Date:  2007-06-11       Impact factor: 28.547

8.  Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation.

Authors:  Timothy E Reddy; Florencia Pauli; Rebekka O Sprouse; Norma F Neff; Kimberly M Newberry; Michael J Garabedian; Richard M Myers
Journal:  Genome Res       Date:  2009-10-02       Impact factor: 9.043

9.  Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

Authors:  Sam John; Peter J Sabo; Robert E Thurman; Myong-Hee Sung; Simon C Biddie; Thomas A Johnson; Gordon L Hager; John A Stamatoyannopoulos
Journal:  Nat Genet       Date:  2011-01-23       Impact factor: 38.330

10.  Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.

Authors:  Jay R Hesselberth; Xiaoyu Chen; Zhihong Zhang; Peter J Sabo; Richard Sandstrom; Alex P Reynolds; Robert E Thurman; Shane Neph; Michael S Kuehn; William S Noble; Stanley Fields; John A Stamatoyannopoulos
Journal:  Nat Methods       Date:  2009-03-22       Impact factor: 28.547

  10 in total
  3 in total

Review 1.  Minireview: nuclear receptor and coregulator proteomics--2012 and beyond.

Authors:  Bert W O'Malley; Anna Malovannaya; Jun Qin
Journal:  Mol Endocrinol       Date:  2012-06-28

2.  Putative regulatory factors associated with intramuscular fat content.

Authors:  Aline S M Cesar; Luciana C A Regitano; James E Koltes; Eric R Fritz-Waters; Dante P D Lanna; Gustavo Gasparin; Gerson B Mourão; Priscila S N Oliveira; James M Reecy; Luiz L Coutinho
Journal:  PLoS One       Date:  2015-06-04       Impact factor: 3.240

3.  Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing.

Authors:  Diana A Stavreva; Antoine Coulon; Songjoon Baek; Myong-Hee Sung; Sam John; Lenka Stixova; Martina Tesikova; Ofir Hakim; Tina Miranda; Mary Hawkins; John A Stamatoyannopoulos; Carson C Chow; Gordon L Hager
Journal:  Genome Res       Date:  2015-02-12       Impact factor: 9.043

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.